Wall clock time and date at job start Tue Mar 31 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47071 * 2 1 4 4 H 1.09005 * 110.77890 * 303.20944 * 3 2 1 5 5 C 1.55158 * 110.72439 * 66.45076 * 3 2 1 6 6 C 1.54909 * 101.61642 * 153.88460 * 5 3 2 7 7 N 1.47427 * 104.83281 * 322.96922 * 6 5 3 8 8 C 1.34770 * 125.64668 * 204.09342 * 7 6 5 9 9 O 1.21590 * 120.00149 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00319 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00337 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47543 * 180.02562 * 11 10 8 13 13 O 1.21296 * 119.99762 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00274 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00115 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99803 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00133 * 179.97438 * 15 14 12 18 18 N 1.31405 * 119.99995 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99883 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47246 * 90.00426 * 19 17 15 21 21 H 1.48507 * 109.47051 * 210.00168 * 19 17 15 22 22 H 1.48499 * 109.47096 * 329.99662 * 19 17 15 23 23 C 1.47014 * 108.70101 * 24.13279 * 7 6 5 24 24 H 1.09003 * 109.88627 * 118.35781 * 23 7 6 25 25 C 1.53000 * 109.88132 * 239.36717 * 23 7 6 26 26 H 1.09004 * 109.47058 * 60.00389 * 1 2 3 27 27 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47405 * 300.00110 * 1 2 3 29 29 H 1.08998 * 109.47190 * 239.99175 * 2 1 3 30 30 H 1.09004 * 109.47058 * 119.99610 * 2 1 3 31 31 H 1.09002 * 111.00366 * 35.78979 * 5 3 2 32 32 H 1.09002 * 111.00429 * 271.98041 * 5 3 2 33 33 H 1.09001 * 110.36668 * 81.81066 * 6 5 3 34 34 H 1.09004 * 110.36307 * 204.13193 * 6 5 3 35 35 H 0.97001 * 119.99654 * 0.02562 * 10 8 7 36 36 H 1.09007 * 109.47143 * 300.00571 * 11 10 8 37 37 H 1.08999 * 109.47152 * 60.00029 * 11 10 8 38 38 H 0.97003 * 119.99886 * 359.97438 * 14 12 11 39 39 H 0.97001 * 120.00195 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47541 * 58.54638 * 25 23 7 41 41 H 1.09000 * 109.47161 * 178.55211 * 25 23 7 42 42 H 1.09007 * 109.46882 * 298.54442 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6426 1.9931 -0.8527 5 6 1.6763 2.1533 1.3303 6 6 2.7869 3.2294 1.4226 7 7 3.9953 2.5710 0.8937 8 6 5.2664 2.9153 1.1799 9 8 6.1897 2.2993 0.6833 10 7 5.5143 3.9425 2.0165 11 6 6.8961 4.3164 2.3281 12 6 6.8980 5.4852 3.2794 13 8 5.8483 5.9589 3.6601 14 7 8.0660 6.0041 3.7071 15 6 8.0677 7.0670 4.5730 16 1 7.1330 7.4888 4.9120 17 6 9.2719 7.6017 5.0144 18 7 10.4091 7.0888 4.6015 19 14 9.2741 9.0504 6.1936 20 1 9.2691 8.5506 7.5919 21 1 10.4900 9.8721 5.9660 22 1 8.0651 9.8805 5.9602 23 6 3.5839 1.4773 0.0016 24 1 3.9514 1.6637 -1.0076 25 6 4.1368 0.1478 0.5190 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7317 1.4615 2.1708 32 1 0.6901 2.6138 1.2704 33 1 2.5283 4.0947 0.8123 34 1 2.9406 3.5278 2.4597 35 1 4.7778 4.4337 2.4130 36 1 7.4058 3.4711 2.7906 37 1 7.4132 4.5942 1.4097 38 1 8.9055 5.6250 3.4029 39 1 11.2497 7.4622 4.9094 40 1 3.7717 -0.0284 1.5308 41 1 3.8067 -0.6612 -0.1325 42 1 5.2262 0.1860 0.5273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686403145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:13 Heat of formation + Delta-G solvation = -75.985776 kcal Electronic energy + Delta-G solvation = -22426.560156 eV Core-core repulsion = 19020.172045 eV Total energy + Delta-G solvation = -3406.388111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46854 -38.67212 -37.76758 -34.45071 -34.22015 -33.58623 -31.39288 -31.27179 -30.16174 -27.32928 -25.90663 -24.57426 -23.27397 -22.89100 -20.01212 -19.61268 -19.07829 -18.26413 -17.83895 -16.24450 -15.88496 -15.55640 -15.16768 -14.79387 -14.64675 -14.44475 -14.31088 -13.88743 -13.60571 -13.40557 -13.15819 -12.86051 -12.43720 -12.35895 -12.15329 -11.96991 -11.83596 -11.66524 -11.61502 -11.38426 -11.11491 -10.87760 -10.78970 -10.50931 -10.45099 -10.30629 -9.86081 -9.62261 -8.86871 -8.60644 -8.38631 -8.08426 -6.49947 -3.91957 2.72321 3.12570 3.22774 3.28208 3.43161 3.77042 4.04044 4.15951 4.32292 4.43393 4.49536 4.90869 4.91652 5.02462 5.07147 5.09100 5.18792 5.24984 5.33882 5.43055 5.50603 5.55457 5.66978 5.70002 5.71630 5.80554 5.88155 5.94689 6.00815 6.03872 6.10366 6.11210 6.25147 6.46935 6.81236 7.25168 7.47289 7.94002 8.23703 8.47011 8.85222 9.06128 9.41271 9.89252 10.67019 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.043016 B = 0.002911 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.761232 B = 9617.720218 C =10120.228244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.097 4.097 4 H 0.084 0.916 5 C -0.125 4.125 6 C 0.096 3.904 7 N -0.635 5.635 8 C 0.723 3.277 9 O -0.594 6.594 10 N -0.724 5.724 11 C 0.128 3.872 12 C 0.430 3.570 13 O -0.598 6.598 14 N -0.550 5.550 15 C -0.304 4.304 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.269 1.269 23 C 0.159 3.841 24 H 0.071 0.929 25 C -0.164 4.164 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 -12.316 -8.540 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.116 4.116 4 H 0.102 0.898 5 C -0.163 4.163 6 C -0.027 4.027 7 N -0.374 5.374 8 C 0.425 3.575 9 O -0.473 6.473 10 N -0.381 5.381 11 C 0.000 4.000 12 C 0.215 3.785 13 O -0.485 6.485 14 N -0.184 5.184 15 C -0.434 4.434 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 C 0.055 3.945 24 H 0.089 0.911 25 C -0.222 4.222 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.244 0.756 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.999 -12.330 -8.566 21.941 hybrid contribution 0.318 0.829 0.626 1.086 sum -15.681 -11.501 -7.941 21.005 Atomic orbital electron populations 1.21795 0.95760 1.01574 1.01907 1.21608 0.95675 0.95286 1.02608 1.22338 0.93786 0.97012 0.98453 0.89787 1.22829 0.98165 0.97620 0.97657 1.22302 0.84870 0.95858 0.99667 1.47582 1.03722 1.35509 1.50604 1.15349 0.81583 0.80777 0.79813 1.90883 1.42389 1.56519 1.57494 1.44812 1.09380 1.34539 1.49411 1.20781 0.82521 0.97398 0.99291 1.19766 0.85147 0.87069 0.86504 1.90486 1.31363 1.64418 1.62225 1.41787 1.06580 1.29435 1.40641 1.19723 0.94555 1.07755 1.21347 0.87708 1.25323 0.94619 0.99329 0.98485 1.69615 0.97687 1.41892 1.44310 0.85814 0.77914 0.80404 0.79898 1.20281 1.20804 1.19339 1.21341 0.93206 0.86699 0.93283 0.91128 1.22236 1.03079 0.96005 1.00895 0.92800 0.92804 0.92545 0.91596 0.91148 0.90476 0.89932 0.91425 0.90577 0.75615 0.90058 0.90032 0.77005 0.91602 0.92663 0.91803 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.76 37.16 0.36 -0.50 16 2 C -0.11 -0.75 4.15 -26.74 -0.11 -0.87 16 3 C -0.10 -0.77 2.91 -88.73 -0.26 -1.03 16 4 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 5 C -0.12 -0.99 5.68 -24.58 -0.14 -1.13 16 6 C 0.10 1.02 6.57 -2.53 -0.02 1.01 16 7 N -0.64 -8.66 3.08 -168.63 -0.52 -9.18 16 8 C 0.72 12.67 8.27 -86.92 -0.72 11.95 16 9 O -0.59 -12.09 15.23 5.29 0.08 -12.01 16 10 N -0.72 -13.01 5.49 -66.42 -0.36 -13.37 16 11 C 0.13 2.49 6.15 -5.20 -0.03 2.45 16 12 C 0.43 10.06 7.85 -10.99 -0.09 9.97 16 13 O -0.60 -15.52 15.24 5.54 0.08 -15.43 16 14 N -0.55 -13.82 5.29 -10.96 -0.06 -13.88 16 15 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 16 H 0.11 2.98 7.16 -52.48 -0.38 2.61 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -24.09 13.05 55.50 0.72 -23.37 16 19 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 23 C 0.16 1.79 3.43 -66.90 -0.23 1.56 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 C -0.16 -1.84 7.94 37.16 0.29 -1.54 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.31 7.49 -51.93 -0.39 -0.08 16 29 H 0.07 0.42 7.60 -51.93 -0.39 0.02 16 30 H 0.07 0.50 6.62 -51.93 -0.34 0.15 16 31 H 0.08 0.62 8.02 -51.93 -0.42 0.21 16 32 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.84 7.30 -51.93 -0.38 0.46 16 35 H 0.41 7.16 5.92 -40.82 -0.24 6.92 16 36 H 0.08 1.52 8.14 -51.92 -0.42 1.09 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.40 9.59 7.90 -40.82 -0.32 9.27 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 41 H 0.06 0.56 6.72 -51.93 -0.35 0.21 16 42 H 0.07 1.04 6.73 -51.92 -0.35 0.69 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -31.63 338.58 -7.62 -39.25 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.47 Total: 13.29 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -1.18 Total: 13.97 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.22 Total: -59.80 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: 0.17 Total: -27.44 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.63 -7.62 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686403145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.734 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds