Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00423 * 2 1 4 4 H 1.48500 * 109.47451 * 270.00080 * 3 2 1 5 5 H 1.48502 * 109.46969 * 29.99789 * 3 2 1 6 6 H 1.48497 * 109.47284 * 149.99627 * 3 2 1 7 7 C 1.37882 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00162 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99769 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46834 * 175.75579 * 9 7 2 11 11 C 1.46897 * 111.00437 * 75.59497 * 10 9 7 12 12 C 1.52992 * 109.47289 * 190.00121 * 11 10 9 13 13 O 1.42904 * 109.47559 * 64.99909 * 12 11 10 14 14 C 1.42899 * 114.00220 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47068 * 179.97438 * 14 13 12 16 16 H 1.08995 * 109.86655 * 54.29884 * 15 14 13 17 17 C 1.54093 * 109.87755 * 175.30794 * 15 14 13 18 18 C 1.54813 * 104.18975 * 121.45890 * 17 15 14 19 19 C 1.54989 * 102.09209 * 20.87578 * 18 17 15 20 20 O 1.43747 * 109.87912 * 293.29240 * 15 14 13 21 21 C 1.46901 * 110.99848 * 199.54852 * 10 9 7 22 22 C 1.53007 * 109.47273 * 71.61353 * 21 10 9 23 23 C 1.52999 * 117.49536 * 244.16498 * 22 21 10 24 24 C 1.53002 * 117.49772 * 175.50441 * 22 21 10 25 25 H 0.97001 * 119.99572 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47657 * 55.75679 * 9 7 2 27 27 H 1.08995 * 109.46956 * 295.75250 * 9 7 2 28 28 H 1.09008 * 109.46688 * 309.99973 * 11 10 9 29 29 H 1.08993 * 109.47307 * 69.99655 * 11 10 9 30 30 H 1.08997 * 109.47528 * 184.99823 * 12 11 10 31 31 H 1.08998 * 109.47285 * 304.99742 * 12 11 10 32 32 H 1.08997 * 109.47249 * 300.00126 * 14 13 12 33 33 H 1.08999 * 109.47027 * 59.99634 * 14 13 12 34 34 H 1.09007 * 110.48506 * 240.12851 * 17 15 14 35 35 H 1.08997 * 110.48986 * 2.77504 * 17 15 14 36 36 H 1.09001 * 110.91051 * 139.08220 * 18 17 15 37 37 H 1.09007 * 110.90251 * 262.68173 * 18 17 15 38 38 H 1.08998 * 110.61895 * 81.48117 * 19 18 17 39 39 H 1.09004 * 110.62058 * 204.32409 * 19 18 17 40 40 H 1.09003 * 109.47009 * 191.60960 * 21 10 9 41 41 H 1.09001 * 109.47344 * 311.61468 * 21 10 9 42 42 H 1.08995 * 115.54795 * 29.83320 * 22 21 10 43 43 H 1.08994 * 117.50187 * 359.97438 * 23 22 21 44 44 H 1.09001 * 117.49751 * 145.01840 * 23 22 21 45 45 H 1.09000 * 117.49542 * 214.97360 * 24 22 21 46 46 H 1.08997 * 117.49937 * 359.97425 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2023 -3.6139 -0.1014 11 6 2.8870 -3.8404 1.1784 12 6 4.0361 -4.8295 0.9740 13 8 5.0199 -4.2464 0.1170 14 6 6.1420 -5.0930 -0.1402 15 6 7.1248 -4.3705 -1.0638 16 1 7.3912 -3.4034 -0.6375 17 6 8.3919 -5.2266 -1.2532 18 6 8.4705 -5.4551 -2.7823 19 6 7.5998 -4.2954 -3.3291 20 8 6.5320 -4.1865 -2.3604 21 6 1.5327 -4.8369 -0.5638 22 6 1.1705 -4.6918 -2.0433 23 6 -0.3148 -4.6923 -2.4103 24 6 0.5566 -5.9062 -2.7427 25 1 -0.4849 0.8401 -0.0004 26 1 0.5688 -2.5249 -0.8492 27 1 0.6823 -2.5903 0.9259 28 1 3.2828 -2.8955 1.5509 29 1 2.1805 -4.2486 1.9011 30 1 4.4878 -5.0660 1.9373 31 1 3.6529 -5.7426 0.5185 32 1 6.6374 -5.3353 0.7999 33 1 5.8021 -6.0113 -0.6189 34 1 9.2722 -4.6880 -0.9022 35 1 8.2916 -6.1775 -0.7299 36 1 9.4981 -5.3704 -3.1360 37 1 8.0458 -6.4217 -3.0534 38 1 8.1744 -3.3701 -3.3696 39 1 7.2042 -4.5437 -4.3140 40 1 2.2014 -5.6880 -0.4353 41 1 0.6251 -4.9966 0.0184 42 1 1.8335 -4.0554 -2.6293 43 1 -1.0339 -4.7965 -1.5979 44 1 -0.6289 -4.0565 -3.2381 45 1 0.8153 -6.0684 -3.7891 46 1 0.4110 -6.8086 -2.1490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = -63.076164 kcal Electronic energy + Delta-G solvation = -23206.897468 eV Core-core repulsion = 19904.609503 eV Total energy + Delta-G solvation = -3302.287965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.46307 -38.02663 -36.95385 -35.13875 -32.44253 -32.19190 -30.78092 -28.73035 -27.48505 -25.19646 -24.52123 -22.23638 -22.07804 -21.78154 -21.00003 -20.49000 -19.35213 -16.87310 -16.28282 -16.21342 -15.85834 -15.65738 -15.16374 -14.95189 -14.37238 -14.17408 -13.70873 -13.68129 -13.55160 -13.03837 -12.62042 -12.06188 -11.93986 -11.85327 -11.84724 -11.57876 -11.28954 -11.20345 -11.08624 -10.98240 -10.77746 -10.70297 -10.58164 -10.48424 -10.21052 -9.79777 -9.71352 -9.55164 -9.25146 -9.17226 -8.94203 -8.26760 -7.04835 -5.87332 -3.86387 3.42556 3.47692 3.53100 3.83138 4.00740 4.33169 4.42832 4.56152 4.70799 4.84202 4.91998 5.10601 5.20204 5.31798 5.35395 5.42489 5.45846 5.47888 5.50140 5.53000 5.56301 5.62865 5.68132 5.76979 5.79611 5.89072 5.96021 5.99857 6.02986 6.10282 6.15603 6.28918 6.36397 6.45195 6.57644 6.71679 6.95593 6.99337 7.39803 7.49697 7.69234 8.00728 8.29454 8.38769 8.73200 9.23223 9.76737 11.23410 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.005168 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.067976 B = 5416.692038 C = 6640.976940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.053 3.947 3 Si 0.895 3.105 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.495 4.495 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.521 5.521 11 C 0.064 3.936 12 C 0.068 3.932 13 O -0.351 6.351 14 C 0.062 3.938 15 C 0.080 3.920 16 H 0.075 0.925 17 C -0.149 4.149 18 C -0.155 4.155 19 C 0.041 3.959 20 O -0.352 6.352 21 C 0.085 3.915 22 C -0.124 4.124 23 C -0.179 4.179 24 C -0.191 4.191 25 H 0.258 0.742 26 H 0.039 0.961 27 H -0.016 1.016 28 H 0.090 0.910 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.020 0.980 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.362 -14.273 -2.533 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.147 4.147 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.534 4.534 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.245 5.245 11 C -0.065 4.065 12 C -0.009 4.009 13 O -0.269 6.269 14 C -0.015 4.015 15 C 0.022 3.978 16 H 0.093 0.907 17 C -0.187 4.187 18 C -0.192 4.192 19 C -0.036 4.036 20 O -0.271 6.271 21 C -0.044 4.044 22 C -0.142 4.142 23 C -0.216 4.216 24 C -0.229 4.229 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.002 0.998 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.131 0.869 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.315 -13.782 -2.980 19.393 hybrid contribution -0.001 0.404 0.725 0.830 sum 13.314 -13.378 -2.255 19.008 Atomic orbital electron populations 1.69971 1.05982 1.26405 1.51997 1.24966 0.94795 0.99105 0.95872 0.86545 0.79740 0.83359 0.78038 1.20777 1.21578 1.19908 1.21241 0.93733 0.89854 1.48584 0.91694 1.19766 0.90138 0.87451 0.95856 1.62042 1.31353 1.04369 1.26744 1.21980 0.93313 0.99673 0.91527 1.22657 0.89793 0.96481 0.92000 1.88180 1.30205 1.40151 1.68400 1.22603 0.88469 0.93797 0.96635 1.22711 0.91216 0.98524 0.85368 0.90666 1.22941 0.97939 1.00901 0.96951 1.23131 1.00910 1.00107 0.95099 1.23583 0.89129 0.96914 0.93944 1.89157 1.30229 1.93215 1.14468 1.21623 0.96036 0.93845 0.92858 1.22236 0.95518 0.99709 0.96753 1.22962 0.94580 1.00713 1.03347 1.22930 1.06390 0.92821 1.00736 0.93219 0.94299 0.99791 0.89142 0.94968 0.94311 0.93957 0.93067 0.93313 0.90372 0.90418 0.90370 0.90554 0.92321 0.89078 0.92105 0.96201 0.86912 0.89351 0.89225 0.89455 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 22.66 29.54 -169.99 -5.02 17.64 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.50 -14.55 8.60 -34.44 -0.30 -14.84 16 8 H 0.06 1.94 7.66 -52.49 -0.40 1.54 16 9 C 0.19 5.20 4.59 -4.97 -0.02 5.18 16 10 N -0.52 -11.81 4.33 -236.07 -1.02 -12.83 16 11 C 0.06 1.27 5.17 -3.83 -0.02 1.25 16 12 C 0.07 1.12 6.02 37.15 0.22 1.34 16 13 O -0.35 -6.51 10.28 -37.24 -0.38 -6.89 16 14 C 0.06 0.87 5.39 37.16 0.20 1.07 16 15 C 0.08 1.07 3.70 -26.16 -0.10 0.97 16 16 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 17 C -0.15 -1.37 6.64 -25.20 -0.17 -1.54 16 18 C -0.15 -1.34 7.16 -24.73 -0.18 -1.51 16 19 C 0.04 0.46 7.72 38.21 0.29 0.76 16 20 O -0.35 -5.67 11.19 -37.24 -0.42 -6.08 16 21 C 0.08 1.64 5.11 -3.82 -0.02 1.62 16 22 C -0.12 -2.32 4.96 -90.62 -0.45 -2.77 16 23 C -0.18 -3.09 9.97 -26.69 -0.27 -3.35 16 24 C -0.19 -2.88 10.26 -26.69 -0.27 -3.16 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.04 1.12 6.93 -51.93 -0.36 0.76 16 27 H -0.02 -0.45 8.00 -51.93 -0.42 -0.86 16 28 H 0.09 2.00 7.32 -51.92 -0.38 1.62 16 29 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.66 6.10 -51.93 -0.32 0.34 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.06 5.88 -51.93 -0.31 0.76 16 41 H 0.02 0.39 7.79 -51.93 -0.40 -0.02 16 42 H 0.11 2.37 8.14 -51.93 -0.42 1.95 16 43 H 0.09 1.52 8.03 -51.93 -0.42 1.10 16 44 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -33.14 368.39 -10.18 -43.32 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.45 Total: -0.28 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.17 Total: -13.52 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.29 Total: -39.73 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.80 Total: -12.98 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.14 -10.18 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.757 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds