Wall clock time and date at job start Tue Mar 31 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99922 * 2 1 4 4 H 1.48496 * 109.47437 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46996 * 300.00203 * 3 2 1 6 6 H 1.48506 * 109.47034 * 59.99812 * 3 2 1 7 7 C 1.37876 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99806 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47461 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00467 * 190.00058 * 10 9 7 12 12 C 1.53005 * 109.47149 * 75.72506 * 11 10 9 13 13 O 1.42898 * 109.47020 * 64.40742 * 12 11 10 14 14 C 1.42896 * 114.00118 * 184.94471 * 13 12 11 15 15 C 1.52996 * 109.47209 * 184.94338 * 14 13 12 16 16 H 1.08995 * 110.35285 * 302.57004 * 15 14 13 17 17 C 1.55496 * 110.28437 * 180.46390 * 15 14 13 18 18 C 1.55306 * 100.69707 * 204.65345 * 17 15 14 19 19 C 1.54381 * 102.43709 * 34.12717 * 18 17 15 20 20 O 1.43234 * 107.58781 * 338.54680 * 19 18 17 21 21 C 1.46900 * 110.99771 * 66.04376 * 10 9 7 22 22 C 1.52999 * 109.47214 * 199.59345 * 21 10 9 23 23 C 1.53008 * 117.49764 * 244.69582 * 22 21 10 24 24 C 1.53001 * 117.50224 * 176.03286 * 22 21 10 25 25 H 0.97000 * 120.00582 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47505 * 59.99786 * 9 7 2 27 27 H 1.09001 * 109.47037 * 300.00136 * 9 7 2 28 28 H 1.09000 * 109.46890 * 315.72363 * 11 10 9 29 29 H 1.09001 * 109.47236 * 195.72878 * 11 10 9 30 30 H 1.08996 * 109.46825 * 304.41171 * 12 11 10 31 31 H 1.08998 * 109.46744 * 184.40742 * 12 11 10 32 32 H 1.08995 * 109.47341 * 64.94066 * 14 13 12 33 33 H 1.09005 * 109.46695 * 304.93928 * 14 13 12 34 34 H 1.08998 * 111.33095 * 86.77912 * 17 15 14 35 35 H 1.09005 * 111.14870 * 322.44999 * 17 15 14 36 36 H 1.08997 * 110.84874 * 275.83621 * 18 17 15 37 37 H 1.09000 * 110.84770 * 152.42191 * 18 17 15 38 38 H 1.09003 * 109.82497 * 98.05790 * 19 18 17 39 39 H 1.09003 * 109.82979 * 219.02719 * 19 18 17 40 40 H 1.09002 * 109.47546 * 319.58763 * 21 10 9 41 41 H 1.08999 * 109.46924 * 79.59386 * 21 10 9 42 42 H 1.08999 * 115.54959 * 30.35786 * 22 21 10 43 43 H 1.09000 * 117.49851 * 359.97438 * 23 22 21 44 44 H 1.09003 * 117.49652 * 145.01941 * 23 22 21 45 45 H 1.09003 * 117.50014 * 214.97430 * 24 22 21 46 46 H 1.09001 * 117.49651 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5213 -4.8935 -0.2376 12 6 1.1570 -5.0086 -1.7192 13 8 2.3520 -5.0546 -2.5013 14 6 2.1240 -5.0501 -3.9120 15 6 3.4557 -5.2253 -4.6445 16 1 4.1528 -4.4382 -4.3573 17 6 3.2306 -5.2114 -6.1830 18 6 4.4704 -6.0143 -6.6630 19 6 4.6651 -7.0378 -5.5238 20 8 4.0161 -6.5166 -4.3581 21 6 2.9710 -3.6539 1.2538 22 6 4.2469 -4.4728 1.0476 23 6 4.3867 -5.7745 1.8395 24 6 5.2308 -4.5543 2.2164 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 0.6136 -4.9371 0.3642 29 1 2.1807 -5.7160 0.0394 30 1 0.5621 -4.1446 -2.0152 31 1 0.5809 -5.9195 -1.8819 32 1 1.6708 -4.1027 -4.2037 33 1 1.4544 -5.8693 -4.1744 34 1 3.2444 -4.1950 -6.5765 35 1 2.3049 -5.7214 -6.4497 36 1 5.3413 -5.3653 -6.7545 37 1 4.2640 -6.5190 -7.6069 38 1 4.2155 -7.9910 -5.8023 39 1 5.7285 -7.1730 -5.3259 40 1 3.2349 -2.6386 1.5496 41 1 2.3661 -4.1143 2.0350 42 1 4.6627 -4.4494 0.0403 43 1 3.5699 -6.0472 2.5078 44 1 4.8949 -6.6072 1.3534 45 1 6.2940 -4.5849 1.9781 46 1 4.9694 -4.0241 3.1322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:48 Heat of formation + Delta-G solvation = -67.721106 kcal Electronic energy + Delta-G solvation = -23058.714854 eV Core-core repulsion = 19756.225469 eV Total energy + Delta-G solvation = -3302.489385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.45354 -37.97383 -36.93548 -35.19327 -32.49801 -32.21541 -30.84428 -28.85498 -27.30753 -25.31233 -24.47658 -22.47504 -21.90100 -21.71910 -21.13499 -20.28961 -19.45540 -17.06836 -16.49440 -16.07394 -15.97200 -15.48989 -15.08949 -14.80954 -14.54614 -14.09007 -13.95772 -13.59704 -13.22141 -13.17363 -12.77299 -12.14689 -11.93437 -11.82752 -11.74763 -11.54593 -11.43992 -11.23147 -11.13247 -11.03090 -10.89262 -10.81254 -10.59073 -10.51373 -10.29581 -10.00791 -9.51176 -9.43404 -9.37414 -9.06763 -8.99625 -8.39221 -7.09175 -5.98982 -3.98872 3.33145 3.40642 3.46668 3.76432 4.04168 4.27749 4.36237 4.46772 4.71672 4.87018 4.89057 5.13247 5.18834 5.29598 5.36605 5.38902 5.41886 5.47277 5.54521 5.56539 5.61237 5.65483 5.80266 5.83915 5.85301 5.88989 5.95055 6.00976 6.06380 6.13884 6.21101 6.28052 6.45477 6.47023 6.49017 6.67162 6.97226 7.07586 7.34645 7.40609 7.74115 7.89676 8.17579 8.32686 8.64563 9.10343 9.65103 11.12049 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.004791 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.071343 B = 5843.396534 C = 7144.345844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.501 4.501 8 H 0.065 0.935 9 C 0.191 3.809 10 N -0.524 5.524 11 C 0.058 3.942 12 C 0.073 3.927 13 O -0.357 6.357 14 C 0.065 3.935 15 C 0.086 3.914 16 H 0.082 0.918 17 C -0.150 4.150 18 C -0.155 4.155 19 C 0.048 3.952 20 O -0.369 6.369 21 C 0.093 3.907 22 C -0.127 4.127 23 C -0.191 4.191 24 C -0.187 4.187 25 H 0.259 0.741 26 H 0.030 0.970 27 H -0.012 1.012 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.018 0.982 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 -12.993 -8.768 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.539 4.539 8 H 0.083 0.917 9 C 0.066 3.934 10 N -0.248 5.248 11 C -0.071 4.071 12 C -0.004 4.004 13 O -0.276 6.276 14 C -0.013 4.013 15 C 0.028 3.972 16 H 0.100 0.900 17 C -0.188 4.188 18 C -0.193 4.193 19 C -0.029 4.029 20 O -0.288 6.288 21 C -0.035 4.035 22 C -0.146 4.146 23 C -0.228 4.228 24 C -0.224 4.224 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.006 0.994 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.036 0.964 42 H 0.129 0.871 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.663 -12.899 -8.871 17.014 hybrid contribution -0.493 0.895 0.258 1.054 sum 6.170 -12.004 -8.613 16.011 Atomic orbital electron populations 1.69966 1.06043 1.26517 1.51584 1.24976 0.94816 0.99224 0.95635 0.86488 0.80232 0.83592 0.77414 1.19596 1.21119 1.21201 1.21230 0.93635 0.89878 1.49190 0.91691 1.19774 0.90181 0.87678 0.95787 1.61956 1.27472 1.02167 1.33215 1.22025 0.97385 0.94367 0.93347 1.22520 0.87031 0.98819 0.92069 1.88028 1.30068 1.94984 1.14494 1.22525 0.95240 0.99975 0.83536 1.23114 0.94808 0.86584 0.92677 0.90049 1.23345 0.98740 1.01745 0.94946 1.23105 0.98697 0.98317 0.99190 1.23102 0.97604 0.96790 0.85371 1.88541 1.73537 1.33260 1.33472 1.21552 0.91610 0.99989 0.90360 1.22459 0.97973 0.97654 0.96491 1.23002 1.02972 0.92245 1.04595 1.22900 0.96873 1.02362 1.00284 0.93109 0.95202 0.99440 0.94532 0.91118 0.92889 0.94488 0.92148 0.93711 0.89473 0.90260 0.90457 0.90176 0.91696 0.91661 0.89297 0.96426 0.87065 0.89594 0.89559 0.89441 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.50 -14.14 8.23 -34.44 -0.28 -14.42 16 8 H 0.06 1.84 7.31 -52.49 -0.38 1.46 16 9 C 0.19 4.99 4.55 -4.98 -0.02 4.97 16 10 N -0.52 -11.63 4.30 -236.07 -1.01 -12.64 16 11 C 0.06 1.10 5.20 -3.82 -0.02 1.08 16 12 C 0.07 1.31 6.13 37.16 0.23 1.54 16 13 O -0.36 -6.74 10.26 -38.42 -0.39 -7.13 16 14 C 0.06 0.98 5.66 37.16 0.21 1.19 16 15 C 0.09 1.17 3.74 -25.41 -0.10 1.07 16 16 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 17 C -0.15 -1.47 6.61 -24.18 -0.16 -1.63 16 18 C -0.16 -1.33 7.00 -24.78 -0.17 -1.50 16 19 C 0.05 0.51 7.80 37.88 0.30 0.80 16 20 O -0.37 -5.48 11.02 -38.42 -0.42 -5.91 16 21 C 0.09 1.89 5.07 -3.82 -0.02 1.87 16 22 C -0.13 -2.23 5.17 -90.62 -0.47 -2.70 16 23 C -0.19 -2.82 10.03 -26.68 -0.27 -3.09 16 24 C -0.19 -2.76 10.26 -26.69 -0.27 -3.04 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.03 0.83 6.57 -51.93 -0.34 0.49 16 27 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 28 H 0.04 0.68 8.00 -51.93 -0.42 0.27 16 29 H 0.07 1.28 7.16 -51.93 -0.37 0.91 16 30 H 0.05 1.03 6.67 -51.93 -0.35 0.68 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.99 6.58 -51.93 -0.34 1.65 16 41 H 0.02 0.35 7.74 -51.93 -0.40 -0.06 16 42 H 0.11 2.13 8.14 -51.93 -0.42 1.70 16 43 H 0.09 1.23 8.03 -51.93 -0.42 0.81 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -31.33 369.00 -10.19 -41.52 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.49 Total: 0.27 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -1.15 Total: -12.41 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.28 Total: -38.69 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.82 Total: -13.04 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.33 -10.19 -41.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.199 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds