Wall clock time and date at job start Tue Mar 31 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00301 * 2 1 4 4 C 1.52994 * 109.47579 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.47053 * 65.00003 * 4 3 2 6 6 C 1.46498 * 119.99883 * 270.00497 * 5 4 3 7 7 C 1.50701 * 109.46855 * 269.99419 * 6 5 4 8 8 H 1.08005 * 120.00298 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00197 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99698 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46986 * 90.00190 * 11 9 7 13 13 H 1.48506 * 109.46758 * 209.99353 * 11 9 7 14 14 H 1.48492 * 109.47420 * 329.99685 * 11 9 7 15 15 C 1.34782 * 119.99682 * 89.99973 * 5 4 3 16 16 O 1.21279 * 119.99315 * 179.72633 * 15 5 4 17 17 C 1.50693 * 119.99886 * 0.02562 * 15 5 4 18 18 C 1.53006 * 117.49595 * 244.96841 * 17 15 5 19 19 C 1.52993 * 117.49860 * 0.02562 * 18 17 15 20 20 C 1.52998 * 117.49843 * 145.02381 * 18 17 15 21 21 C 1.53003 * 117.49674 * 176.31283 * 17 15 5 22 22 C 1.52999 * 117.49750 * 214.98030 * 21 17 15 23 23 C 1.52999 * 117.49825 * 359.97267 * 21 17 15 24 24 H 1.08999 * 109.46796 * 300.00059 * 1 2 3 25 25 H 1.09005 * 109.47356 * 59.99567 * 1 2 3 26 26 H 1.08995 * 109.46986 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47070 * 59.99918 * 3 2 1 28 28 H 1.09008 * 109.46952 * 300.00625 * 3 2 1 29 29 H 1.08996 * 109.47306 * 305.00692 * 4 3 2 30 30 H 1.08996 * 109.47473 * 184.99840 * 4 3 2 31 31 H 1.08993 * 109.47418 * 29.99353 * 6 5 4 32 32 H 1.09002 * 109.47085 * 150.00383 * 6 5 4 33 33 H 0.96994 * 120.00496 * 180.02562 * 10 9 7 34 34 H 1.08995 * 115.55645 * 30.63969 * 17 15 5 35 35 H 1.09002 * 109.47458 * 111.38978 * 19 18 17 36 36 H 1.09006 * 109.47080 * 231.38750 * 19 18 17 37 37 H 1.08996 * 109.47620 * 351.38914 * 19 18 17 38 38 H 1.09000 * 109.47421 * 8.60721 * 20 18 17 39 39 H 1.09001 * 109.47321 * 128.60520 * 20 18 17 40 40 H 1.08998 * 109.47376 * 248.60971 * 20 18 17 41 41 H 1.08996 * 109.47491 * 111.39502 * 22 21 17 42 42 H 1.09013 * 109.46759 * 231.38890 * 22 21 17 43 43 H 1.08999 * 109.47409 * 351.38495 * 22 21 17 44 44 H 1.08998 * 109.47085 * 59.24647 * 23 21 17 45 45 H 1.09005 * 109.47026 * 179.24458 * 23 21 17 46 46 H 1.08994 * 109.47448 * 299.24531 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1051 -0.8920 -1.3429 7 6 5.5009 -1.2978 -0.9451 8 1 6.2196 -0.5459 -0.6540 9 6 5.8605 -2.6288 -0.9529 10 7 4.9854 -3.5444 -1.3070 11 14 7.5905 -3.1317 -0.4592 12 1 7.6340 -3.3849 1.0034 13 1 7.9732 -4.3682 -1.1871 14 1 8.5395 -2.0420 -0.8014 15 6 4.2614 1.3339 -2.3219 16 8 4.6306 0.8207 -3.3569 17 6 4.1287 2.8321 -2.2290 18 6 3.0665 3.5026 -3.1026 19 6 2.2201 2.6007 -4.0031 20 6 2.3459 4.7233 -2.5268 21 6 4.5500 3.6555 -3.4478 22 6 5.1984 5.0172 -3.1905 23 6 5.0743 2.8948 -4.6673 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 3.8515 0.5682 0.8408 30 1 3.9785 2.1765 0.0889 31 1 3.3853 -1.3629 -0.6735 32 1 3.9120 -1.2113 -2.3670 33 1 5.2382 -4.4807 -1.3121 34 1 4.3138 3.2603 -1.2440 35 1 1.1923 2.5866 -3.6404 36 1 2.2401 2.9842 -5.0233 37 1 2.6248 1.5888 -3.9873 38 1 2.8285 5.0251 -1.5972 39 1 2.3919 5.5437 -3.2429 40 1 1.3040 4.4708 -2.3299 41 1 6.2484 4.9803 -3.4806 42 1 4.6862 5.7802 -3.7769 43 1 5.1225 5.2614 -2.1310 44 1 4.3081 2.2060 -5.0230 45 1 5.3219 3.6028 -5.4583 46 1 5.9665 2.3337 -4.3896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091491851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:17 Heat of formation + Delta-G solvation = -62.709577 kcal Electronic energy + Delta-G solvation = -24369.389389 eV Core-core repulsion = 21067.117320 eV Total energy + Delta-G solvation = -3302.272068 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27713 -37.90939 -37.03551 -34.70942 -32.58775 -31.01804 -29.53782 -28.52661 -28.31126 -26.64992 -26.07253 -25.82838 -23.25823 -22.62016 -20.72936 -17.91165 -17.61540 -16.76881 -16.33539 -15.94854 -15.52284 -15.02711 -14.90061 -14.61934 -14.24475 -14.09223 -13.71973 -13.24728 -12.90962 -12.68112 -12.44094 -12.29973 -12.24708 -12.12801 -11.89703 -11.74612 -11.58857 -11.56269 -11.45921 -11.38225 -11.17244 -10.83270 -10.77774 -10.54029 -10.35117 -10.04215 -9.53817 -9.49164 -9.36326 -9.26411 -8.52161 -8.31448 -7.50777 -5.92591 -3.96457 3.20565 3.36072 3.42259 3.47023 3.94395 4.02025 4.14582 4.53213 4.79080 4.83831 4.88489 5.12174 5.26826 5.34074 5.37096 5.41707 5.48355 5.56010 5.58442 5.60712 5.63404 5.65030 5.75731 5.80111 5.82927 5.89317 5.91896 6.01004 6.04512 6.08743 6.17775 6.24086 6.30147 6.35294 6.49203 6.56801 6.93123 7.34273 7.46503 7.63885 7.71109 8.05799 8.38087 8.59314 9.03041 9.24836 9.67533 11.15301 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.006373 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.057164 B = 4392.549736 C = 5658.586060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.046 3.954 4 C 0.113 3.887 5 N -0.586 5.586 6 C 0.251 3.749 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.535 3.465 16 O -0.534 6.534 17 C -0.179 4.179 18 C -0.100 4.100 19 C -0.124 4.124 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.112 4.112 23 C -0.105 4.105 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.261 0.739 34 H 0.113 0.887 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 16.887 0.578 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.032 4.032 4 C -0.011 4.011 5 N -0.316 5.316 6 C 0.132 3.868 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.322 3.678 16 O -0.412 6.412 17 C -0.200 4.200 18 C -0.100 4.100 19 C -0.181 4.181 20 C -0.168 4.168 21 C -0.091 4.091 22 C -0.169 4.169 23 C -0.162 4.162 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.058 0.942 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.558 16.200 0.015 17.876 hybrid contribution 0.711 -0.121 0.615 0.948 sum -6.847 16.080 0.630 17.488 Atomic orbital electron populations 1.22683 0.82181 1.02502 0.99032 1.88101 1.18602 1.27062 1.95134 1.23097 0.95340 0.85300 0.99511 1.21489 0.91217 0.98852 0.89580 1.48117 1.64078 1.09676 1.09773 1.19273 0.96570 0.72209 0.98731 1.21484 0.97519 0.92160 1.45069 0.92737 1.24908 0.97261 0.96447 0.95457 1.69943 1.34277 1.00902 1.48220 0.86558 0.84860 0.78026 0.78311 1.20742 1.21191 1.20016 1.19324 0.77904 0.86643 0.83937 1.90649 1.46631 1.74665 1.29294 1.22900 1.06688 0.93740 0.96711 1.21616 0.90398 0.97765 1.00259 1.21466 0.98243 1.00195 0.98202 1.21340 0.99639 0.95727 1.00142 1.21637 0.95412 0.96005 0.96051 1.21326 1.00295 0.94144 1.01137 1.21363 1.02746 0.98235 0.93841 0.94770 0.94671 0.89838 0.93408 0.93421 0.89299 0.90233 0.93787 0.94379 0.92911 0.86953 0.92815 0.92205 0.90543 0.92472 0.92099 0.92350 0.92098 0.92225 0.92656 0.90810 0.94159 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.55 9.53 -35.23 -0.34 -6.89 16 3 C 0.05 0.68 6.28 37.15 0.23 0.91 16 4 C 0.11 1.93 5.64 -4.04 -0.02 1.90 16 5 N -0.59 -12.77 2.42 -175.07 -0.42 -13.19 16 6 C 0.25 6.81 4.98 -5.19 -0.03 6.79 16 7 C -0.52 -15.29 9.39 -34.44 -0.32 -15.62 16 8 H 0.05 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.39 13.29 55.43 0.74 -26.66 16 11 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.53 11.24 6.18 -10.99 -0.07 11.17 16 16 O -0.53 -13.13 11.61 5.56 0.06 -13.07 16 17 C -0.18 -2.82 4.65 -91.77 -0.43 -3.24 16 18 C -0.10 -1.33 2.70 -154.47 -0.42 -1.74 16 19 C -0.12 -1.78 8.19 37.15 0.30 -1.48 16 20 C -0.11 -1.11 8.88 37.16 0.33 -0.78 16 21 C -0.09 -1.29 2.70 -154.47 -0.42 -1.70 16 22 C -0.11 -1.24 8.85 37.16 0.33 -0.91 16 23 C -0.11 -1.69 7.90 37.16 0.29 -1.39 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 30 H 0.08 1.10 5.94 -51.93 -0.31 0.79 16 31 H 0.04 1.25 7.11 -51.93 -0.37 0.88 16 32 H 0.04 1.17 7.43 -51.93 -0.39 0.78 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.11 1.55 6.12 -51.93 -0.32 1.23 16 35 H 0.05 0.68 7.92 -51.93 -0.41 0.27 16 36 H 0.06 0.78 8.01 -51.93 -0.42 0.36 16 37 H 0.08 1.38 5.16 -51.93 -0.27 1.12 16 38 H 0.06 0.52 7.78 -51.93 -0.40 0.12 16 39 H 0.06 0.54 8.02 -51.93 -0.42 0.13 16 40 H 0.06 0.54 7.92 -51.93 -0.41 0.13 16 41 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 42 H 0.06 0.57 8.02 -51.92 -0.42 0.15 16 43 H 0.05 0.56 7.78 -51.93 -0.40 0.15 16 44 H 0.07 1.30 5.05 -51.93 -0.26 1.04 16 45 H 0.04 0.54 8.09 -51.93 -0.42 0.12 16 46 H 0.07 1.25 7.40 -51.93 -0.38 0.86 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -33.66 361.25 -6.82 -40.48 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.09 Total: -0.70 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 0.80 Total: -2.86 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.31 Total: -39.85 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.27 Total: -19.96 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.66 -6.82 -40.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091491851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.229 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds