Wall clock time and date at job start Tue Mar 31 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34234 * 116.99951 * 2 1 4 4 O 1.20827 * 119.99778 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00012 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47213 * 179.97438 * 5 3 2 7 7 C 1.36936 * 119.99767 * 270.00350 * 6 5 3 8 8 H 1.08000 * 120.00370 * 9.34964 * 7 6 5 9 9 C 1.38815 * 120.00047 * 189.35270 * 7 6 5 10 10 N 1.31622 * 119.99780 * 25.74886 * 9 7 6 11 11 Si 1.86801 * 120.00171 * 205.75534 * 9 7 6 12 12 H 1.48495 * 109.46959 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47414 * 119.99756 * 11 9 7 14 14 H 1.48502 * 109.47149 * 239.99723 * 11 9 7 15 15 C 1.46497 * 120.00154 * 89.99890 * 6 5 3 16 16 C 1.52995 * 109.47351 * 87.47161 * 15 6 5 17 17 C 1.52995 * 109.47549 * 173.90362 * 16 15 6 18 18 C 1.52995 * 109.47549 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.46896 * 300.00196 * 18 17 16 20 20 C 1.53007 * 109.47177 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47189 * 299.99785 * 19 18 17 22 22 C 1.52994 * 109.47640 * 59.99856 * 19 18 17 23 23 C 1.53001 * 109.46896 * 293.90558 * 16 15 6 24 24 H 1.09001 * 109.46626 * 60.00535 * 1 2 3 25 25 H 1.09003 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47022 * 300.00462 * 1 2 3 27 27 H 1.09000 * 109.47299 * 59.99805 * 5 3 2 28 28 H 1.09000 * 109.47278 * 299.99592 * 5 3 2 29 29 H 0.97000 * 119.99523 * 180.02562 * 10 9 7 30 30 H 1.08998 * 109.47005 * 327.46936 * 15 6 5 31 31 H 1.09003 * 109.47216 * 207.47009 * 15 6 5 32 32 H 1.08998 * 109.47192 * 53.90052 * 16 15 6 33 33 H 1.09008 * 109.47140 * 59.99627 * 17 16 15 34 34 H 1.09004 * 109.46991 * 300.00253 * 17 16 15 35 35 H 1.08994 * 109.47434 * 179.97438 * 18 17 16 36 36 H 1.08998 * 109.47192 * 59.99690 * 18 17 16 37 37 H 1.09000 * 109.47051 * 59.99347 * 20 19 18 38 38 H 1.08993 * 109.47002 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.46829 * 300.00077 * 20 19 18 40 40 H 1.08995 * 109.47369 * 59.99748 * 21 19 18 41 41 H 1.09004 * 109.47095 * 180.02562 * 21 19 18 42 42 H 1.09005 * 109.47302 * 299.99750 * 21 19 18 43 43 H 1.09008 * 109.47207 * 59.99332 * 22 19 18 44 44 H 1.08993 * 109.47735 * 180.02562 * 22 19 18 45 45 H 1.08998 * 109.47304 * 299.99835 * 23 16 15 46 46 H 1.08994 * 109.47245 * 59.99681 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1763 3.3356 -1.1864 8 1 3.8809 2.8706 -2.1153 9 6 4.7533 4.5981 -1.1951 10 7 5.5537 4.9626 -0.2158 11 14 4.3938 5.7798 -2.5964 12 1 3.4715 5.1337 -3.5644 13 1 3.7626 7.0107 -2.0565 14 1 5.6621 6.1342 -3.2828 15 6 4.1889 3.3831 1.2682 16 6 5.6272 3.1665 1.7424 17 6 5.8892 4.0216 2.9838 18 6 7.3278 3.8055 3.4578 19 6 7.5349 2.3292 3.8023 20 6 8.9733 2.1132 4.2769 21 6 6.5653 1.9242 4.9144 22 6 7.2730 1.4741 2.5609 23 6 5.8337 1.6902 2.0871 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9565 0.7806 -0.8891 28 1 3.9558 0.7811 0.8908 29 1 5.9565 5.8449 -0.2216 30 1 3.4974 2.9949 2.0160 31 1 4.0098 4.4489 1.1261 32 1 6.3183 3.4547 0.9503 33 1 5.1981 3.7333 3.7760 34 1 5.7420 5.0733 2.7382 35 1 7.5145 4.4150 4.3419 36 1 8.0185 4.0940 2.6655 37 1 9.1595 2.7224 5.1613 38 1 9.1210 1.0615 4.5218 39 1 9.6644 2.4019 3.4849 40 1 5.5404 2.0782 4.5768 41 1 6.7132 0.8725 5.1601 42 1 6.7519 2.5333 5.7989 43 1 7.9637 1.7627 1.7686 44 1 7.4201 0.4224 2.8065 45 1 5.1427 1.4019 2.8792 46 1 5.6471 1.0811 1.2028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093562387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:31 Heat of formation + Delta-G solvation = -79.644952 kcal Electronic energy + Delta-G solvation = -24330.509587 eV Core-core repulsion = 21027.503145 eV Total energy + Delta-G solvation = -3303.006441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.60828 -39.00409 -36.29237 -35.26798 -32.48496 -31.50455 -30.04341 -28.38481 -27.18992 -27.03606 -26.06315 -23.94239 -22.13857 -21.71783 -19.92797 -19.55307 -17.77042 -16.86056 -16.70061 -15.82736 -15.67544 -15.03952 -14.58960 -14.32990 -13.72937 -13.66704 -13.52147 -13.26251 -12.86408 -12.79882 -12.54019 -12.14422 -11.85198 -11.65163 -11.45499 -11.41301 -11.29305 -11.15398 -10.89281 -10.79865 -10.71529 -10.46278 -10.31880 -10.20717 -10.12611 -9.86411 -9.83164 -9.72923 -9.41379 -9.03782 -9.02770 -8.34758 -6.96882 -5.80125 -3.12823 3.11186 3.33329 3.48200 3.49223 3.52951 4.49622 5.11694 5.15475 5.22674 5.31013 5.38681 5.43618 5.49301 5.63422 5.72637 5.80952 5.86962 5.91502 5.97525 6.03794 6.04324 6.09410 6.13783 6.20583 6.25238 6.26958 6.31293 6.38758 6.50085 6.56042 6.64569 6.72679 6.78905 6.82951 6.98360 7.08711 7.10422 7.31015 7.37860 7.64172 7.75417 8.22518 8.24120 8.65972 9.18110 9.75956 10.18710 11.19901 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012289 B = 0.006854 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.858618 B = 4084.216236 C = 5876.155470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.414 3.586 4 O -0.498 6.498 5 C 0.153 3.847 6 N -0.561 5.561 7 C -0.256 4.256 8 H 0.072 0.928 9 C 0.010 3.990 10 N -0.882 5.882 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.293 1.293 15 C 0.183 3.817 16 C -0.090 4.090 17 C -0.102 4.102 18 C -0.101 4.101 19 C -0.064 4.064 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.102 4.102 23 C -0.120 4.120 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.252 0.748 30 H 0.004 0.996 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.040 0.960 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 -7.938 7.445 10.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.296 6.296 3 C 0.252 3.748 4 O -0.382 6.382 5 C 0.021 3.979 6 N -0.279 5.279 7 C -0.384 4.384 8 H 0.090 0.910 9 C -0.188 4.188 10 N -0.527 5.527 11 Si 0.723 3.277 12 H -0.206 1.206 13 H -0.216 1.216 14 H -0.220 1.220 15 C 0.058 3.942 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.138 4.138 19 C -0.064 4.064 20 C -0.197 4.197 21 C -0.198 4.198 22 C -0.139 4.139 23 C -0.157 4.157 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.202 -7.423 7.457 10.591 hybrid contribution -0.598 0.783 -0.687 1.202 sum 0.604 -6.640 6.770 9.502 Atomic orbital electron populations 1.23032 0.79086 1.02210 1.01733 1.86633 1.21676 1.36189 1.85063 1.27347 0.95028 0.80611 0.71788 1.90587 1.66940 1.36519 1.44201 1.20638 0.84912 0.89322 1.03071 1.43898 1.74158 1.05789 1.04071 1.19189 1.34837 0.99066 0.85357 0.91006 1.24657 0.97716 0.98582 0.97834 1.70169 1.29115 1.19758 1.33621 0.86377 0.77687 0.81726 0.81916 1.20572 1.21600 1.22016 1.20742 0.92091 0.98011 0.83366 1.21854 1.01395 0.90501 0.97214 1.21429 0.94389 1.00701 0.97505 1.21518 0.98567 0.94053 0.99677 1.20516 0.94155 0.96367 0.95354 1.21871 0.96570 1.00679 1.00564 1.21940 1.00339 0.99966 0.97551 1.21543 0.98377 0.97579 0.96412 1.21855 0.94683 0.99870 0.99326 0.92752 0.89338 0.92847 0.89297 0.89356 0.93720 0.97745 0.90302 0.86087 0.94169 0.92259 0.93675 0.92163 0.93326 0.93330 0.92934 0.91701 0.93604 0.93612 0.92296 0.93588 0.93924 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.38 -6.63 10.57 -39.27 -0.41 -7.04 16 3 C 0.41 8.52 8.03 36.00 0.29 8.81 16 4 O -0.50 -12.06 16.18 -18.75 -0.30 -12.36 16 5 C 0.15 3.05 5.39 -5.20 -0.03 3.02 16 6 N -0.56 -13.32 1.90 -174.62 -0.33 -13.65 16 7 C -0.26 -6.76 9.68 -15.06 -0.15 -6.90 16 8 H 0.07 1.91 7.95 -52.49 -0.42 1.49 16 9 C 0.01 0.27 4.86 -17.43 -0.08 0.18 16 10 N -0.88 -23.06 8.38 55.49 0.46 -22.59 16 11 Si 0.89 21.55 29.63 -169.99 -5.04 16.51 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.18 4.20 4.41 -4.05 -0.02 4.18 16 16 C -0.09 -1.81 1.70 -90.62 -0.15 -1.96 16 17 C -0.10 -1.85 4.93 -26.74 -0.13 -1.98 16 18 C -0.10 -1.59 4.73 -26.73 -0.13 -1.72 16 19 C -0.06 -0.91 0.77 -154.51 -0.12 -1.02 16 20 C -0.14 -1.72 8.47 37.16 0.31 -1.41 16 21 C -0.14 -1.87 7.78 37.16 0.29 -1.58 16 22 C -0.10 -1.56 4.73 -26.70 -0.13 -1.69 16 23 C -0.12 -2.09 3.94 -26.70 -0.11 -2.19 16 24 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.75 8.13 -51.93 -0.42 0.32 16 27 H 0.09 1.66 8.04 -51.93 -0.42 1.25 16 28 H 0.09 1.57 5.66 -51.93 -0.29 1.27 16 29 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 30 H 0.00 0.10 8.09 -51.93 -0.42 -0.32 16 31 H 0.08 2.07 6.20 -51.93 -0.32 1.75 16 32 H 0.12 2.90 6.03 -51.93 -0.31 2.58 16 33 H 0.04 0.69 6.43 -51.92 -0.33 0.36 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.93 4.81 -51.93 -0.25 0.68 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.71 6.43 -51.93 -0.33 0.38 16 46 H 0.06 1.09 5.68 -51.93 -0.29 0.80 16 LS Contribution 347.41 15.07 5.24 5.24 Total: -1.00 -28.25 347.41 -7.49 -35.74 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.03 Total: 0.87 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 0.92 Total: -2.70 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.13 Total: -36.25 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.72 Total: -19.40 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.04 Total: 16.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.25 -7.49 -35.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093562387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.906 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds