Wall clock time and date at job start Tue Mar 31 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34217 * 116.99859 * 2 1 4 4 O 1.20831 * 120.00253 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00037 * 179.97438 * 3 2 1 6 6 C 1.53001 * 110.37034 * 299.27064 * 5 3 2 7 7 C 1.54265 * 110.32642 * 61.45167 * 5 3 2 8 8 C 1.54374 * 105.06093 * 118.89376 * 7 5 3 9 9 N 1.48565 * 104.59443 * 23.86024 * 8 7 5 10 10 C 1.46901 * 110.99781 * 200.95732 * 9 8 7 11 11 C 1.53000 * 109.47276 * 78.65938 * 10 9 8 12 12 C 1.53006 * 109.46814 * 81.30281 * 11 10 9 13 13 C 1.53000 * 109.47179 * 321.30494 * 11 10 9 14 14 C 1.52997 * 109.46953 * 201.30279 * 11 10 9 15 15 C 1.50709 * 109.46788 * 180.02562 * 14 11 10 16 16 H 1.07995 * 119.99652 * 359.97438 * 15 14 11 17 17 C 1.37873 * 119.99691 * 180.02562 * 15 14 11 18 18 N 1.31520 * 120.00398 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99858 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47342 * 89.99544 * 19 17 15 21 21 H 1.48494 * 109.46972 * 209.99711 * 19 17 15 22 22 H 1.48494 * 109.46951 * 329.99412 * 19 17 15 23 23 C 1.48558 * 104.21862 * 320.50935 * 9 8 7 24 24 H 1.09003 * 109.47366 * 60.00430 * 1 2 3 25 25 H 1.09001 * 109.47425 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47481 * 300.00437 * 1 2 3 27 27 H 1.08990 * 109.47692 * 180.72559 * 6 5 3 28 28 H 1.09003 * 109.46855 * 300.73023 * 6 5 3 29 29 H 1.09003 * 109.46854 * 60.72347 * 6 5 3 30 30 H 1.09003 * 110.31998 * 359.97438 * 7 5 3 31 31 H 1.09000 * 110.41086 * 237.84157 * 7 5 3 32 32 H 1.08998 * 110.41701 * 265.07865 * 8 7 5 33 33 H 1.09002 * 110.40957 * 142.63298 * 8 7 5 34 34 H 1.09001 * 109.47168 * 318.65984 * 10 9 8 35 35 H 1.09001 * 109.47180 * 198.66407 * 10 9 8 36 36 H 1.08997 * 109.47206 * 282.36521 * 12 11 10 37 37 H 1.09002 * 109.46996 * 42.36479 * 12 11 10 38 38 H 1.09005 * 109.46911 * 162.36456 * 12 11 10 39 39 H 1.08997 * 109.47006 * 169.11531 * 13 11 10 40 40 H 1.08995 * 109.47067 * 289.11509 * 13 11 10 41 41 H 1.09002 * 109.47123 * 49.11560 * 13 11 10 42 42 H 1.09004 * 109.47175 * 299.99854 * 14 11 10 43 43 H 1.08994 * 109.47431 * 60.00553 * 14 11 10 44 44 H 0.96999 * 120.00058 * 180.02562 * 18 17 15 45 45 H 1.08999 * 110.41149 * 158.26082 * 23 9 8 46 46 H 1.08992 * 110.41496 * 280.70565 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1343 0.6026 1.2521 7 6 4.1381 0.6122 -1.2698 8 6 4.8952 1.7395 -2.0040 9 7 5.2327 2.7191 -0.9393 10 6 5.5014 4.0456 -1.5103 11 6 4.1768 4.7365 -1.8404 12 6 3.5970 5.3614 -0.5698 13 6 3.1907 3.7086 -2.3990 14 6 4.4181 5.8305 -2.8825 15 6 3.1134 6.5114 -3.2072 16 1 2.2032 6.1952 -2.7194 17 6 3.0817 7.5373 -4.1277 18 7 4.1900 7.9221 -4.7221 19 14 1.4645 8.3809 -4.5308 20 1 1.2637 9.5309 -3.6128 21 1 1.4959 8.8669 -5.9336 22 1 0.3482 7.4156 -4.3663 23 6 4.0261 2.7467 -0.0731 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 5.2215 0.6793 1.2441 28 1 3.7417 1.0977 2.1404 29 1 3.8443 -0.4480 1.2636 30 1 3.3302 0.2296 -1.8935 31 1 4.8230 -0.1927 -1.0032 32 1 4.2546 2.2008 -2.7557 33 1 5.8034 1.3504 -2.4643 34 1 6.0911 3.9368 -2.4205 35 1 6.0547 4.6466 -0.7886 36 1 3.1388 4.5836 0.0411 37 1 4.3950 5.8438 -0.0054 38 1 2.8441 6.1019 -0.8400 39 1 2.1961 4.1512 -2.4527 40 1 3.5080 3.4057 -3.3968 41 1 3.1656 2.8367 -1.7453 42 1 5.1205 6.5628 -2.4845 43 1 4.8310 5.3854 -3.7876 44 1 4.1678 8.6441 -5.3695 45 1 4.2799 3.1158 0.9206 46 1 3.2496 3.3655 -0.5225 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093814126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:42 Heat of formation + Delta-G solvation = -28.378831 kcal Electronic energy + Delta-G solvation = -24714.209803 eV Core-core repulsion = 21413.426428 eV Total energy + Delta-G solvation = -3300.783376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50894 -39.73328 -36.55656 -35.95870 -33.06683 -31.79086 -29.63942 -28.10210 -27.78641 -26.62204 -26.49501 -24.93271 -22.95194 -22.38197 -20.78729 -19.57482 -18.14357 -17.20405 -16.86690 -16.55205 -16.16378 -15.48241 -14.95256 -14.54324 -14.43270 -13.86153 -13.78985 -13.41012 -13.13934 -12.80132 -12.58358 -12.51055 -12.15052 -12.00005 -11.91578 -11.60876 -11.35578 -11.16897 -11.05330 -10.93018 -10.88130 -10.81202 -10.62357 -10.46774 -10.37765 -10.20299 -10.14919 -9.72979 -9.65345 -9.30440 -8.91059 -8.31610 -7.65270 -5.95829 -3.96121 2.18549 2.60533 3.33457 3.39916 3.43534 4.31305 4.47260 4.49923 4.59198 4.76861 4.96872 4.98406 5.05949 5.34170 5.38067 5.39477 5.40914 5.48649 5.63826 5.68243 5.74721 5.83380 5.88677 5.95146 5.99508 6.03912 6.07405 6.20059 6.25260 6.35740 6.41571 6.43727 6.52568 6.69279 6.76503 7.05591 7.08779 7.23630 7.27772 7.45969 7.69360 7.72049 7.83244 8.03602 8.48297 9.09127 9.66840 11.15410 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.005127 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.612820 B = 5459.717756 C = 6262.787008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.494 6.494 5 C -0.061 4.061 6 C -0.130 4.130 7 C -0.108 4.108 8 C -0.006 4.006 9 N -0.503 5.503 10 C 0.049 3.951 11 C -0.090 4.090 12 C -0.154 4.154 13 C -0.162 4.162 14 C 0.038 3.962 15 C -0.508 4.508 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.886 3.114 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.007 4.007 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.259 0.741 45 H 0.080 0.920 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 -17.584 10.045 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.380 6.380 5 C -0.063 4.063 6 C -0.187 4.187 7 C -0.146 4.146 8 C -0.134 4.134 9 N -0.225 5.225 10 C -0.079 4.079 11 C -0.091 4.091 12 C -0.211 4.211 13 C -0.218 4.218 14 C 0.001 3.999 15 C -0.546 4.546 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.714 3.286 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.133 4.133 24 H 0.082 0.918 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.425 -17.309 10.214 20.148 hybrid contribution -1.764 0.960 -0.804 2.163 sum -3.189 -16.349 9.410 19.131 Atomic orbital electron populations 1.23266 0.76627 1.03465 1.02709 1.86494 1.23140 1.33590 1.84256 1.23756 0.91865 0.81322 0.72135 1.90708 1.66858 1.36138 1.44326 1.21342 0.86121 0.99711 0.99100 1.21809 1.02312 1.00051 0.94555 1.22389 0.99769 0.98430 0.94052 1.23927 1.00437 0.93109 0.95899 1.65680 1.33075 1.08030 1.15746 1.22542 0.97625 0.88483 0.99243 1.21135 0.93576 0.97035 0.97353 1.22474 1.01244 1.00937 0.96429 1.22806 1.00611 0.98768 0.99641 1.19105 0.96962 0.91818 0.92045 1.21252 0.94323 1.16543 1.22528 0.92418 1.25001 0.95962 0.97179 0.96330 1.69965 1.26442 1.29032 1.28241 0.86685 0.84457 0.79923 0.77515 1.20748 1.21347 1.19990 1.24663 0.95946 0.92939 0.99757 0.91784 0.88255 0.91955 0.90182 0.92393 0.91745 0.91079 0.89853 0.89652 0.90412 0.91093 0.90860 0.92507 0.93864 0.91210 0.92234 0.93058 0.91437 0.96564 0.96771 0.93163 0.90200 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.27 10.48 -39.22 -0.41 -4.69 16 3 C 0.47 6.55 6.02 36.01 0.22 6.76 16 4 O -0.49 -8.39 14.97 -18.75 -0.28 -8.67 16 5 C -0.06 -0.78 0.77 -154.27 -0.12 -0.90 16 6 C -0.13 -1.33 8.19 37.16 0.30 -1.03 16 7 C -0.11 -1.28 6.00 -25.35 -0.15 -1.43 16 8 C -0.01 -0.09 5.72 -2.18 -0.01 -0.10 16 9 N -0.50 -7.67 5.65 -229.97 -1.30 -8.97 16 10 C 0.05 0.86 5.29 -3.82 -0.02 0.84 16 11 C -0.09 -1.82 0.52 -154.51 -0.08 -1.90 16 12 C -0.15 -3.04 7.95 37.16 0.30 -2.75 16 13 C -0.16 -3.17 5.64 37.16 0.21 -2.96 16 14 C 0.04 0.97 3.92 -27.88 -0.11 0.86 16 15 C -0.51 -14.12 7.51 -34.44 -0.26 -14.38 16 16 H 0.06 1.59 5.89 -52.49 -0.31 1.28 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 19 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.01 -0.10 2.99 -2.18 -0.01 -0.11 16 24 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.82 7.69 -51.93 -0.40 0.42 16 31 H 0.08 0.83 7.71 -51.93 -0.40 0.43 16 32 H 0.09 1.33 3.77 -51.93 -0.20 1.13 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.27 7.77 -51.93 -0.40 0.87 16 35 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 36 H 0.06 1.04 4.65 -51.93 -0.24 0.79 16 37 H 0.04 0.80 7.72 -51.93 -0.40 0.40 16 38 H 0.07 1.54 6.25 -51.93 -0.32 1.21 16 39 H 0.06 1.29 6.98 -51.93 -0.36 0.93 16 40 H 0.05 1.01 6.81 -51.93 -0.35 0.66 16 41 H 0.07 1.16 1.73 -51.93 -0.09 1.07 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.01 0.38 8.12 -51.93 -0.42 -0.04 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.08 1.18 7.74 -51.93 -0.40 0.77 16 46 H 0.14 2.36 0.86 -51.93 -0.04 2.32 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -31.08 336.60 -7.23 -38.31 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.26 Total: 2.45 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 1.24 Total: -14.20 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.56 Total: -35.22 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.69 Total: -13.35 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.08 -7.23 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093814126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.933 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds