Wall clock time and date at job start Tue Mar 31 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99813 * 2 1 4 4 O 1.20823 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99988 * 179.97438 * 3 2 1 6 6 C 1.52998 * 110.28608 * 60.67442 * 5 3 2 7 7 C 1.54255 * 110.32214 * 298.54704 * 5 3 2 8 8 C 1.54383 * 105.05993 * 241.09977 * 7 5 3 9 9 N 1.48559 * 104.59304 * 336.15150 * 8 7 5 10 10 C 1.46904 * 110.99835 * 159.03898 * 9 8 7 11 11 C 1.52997 * 109.47416 * 79.68564 * 10 9 8 12 12 C 1.52998 * 109.46916 * 292.31963 * 11 10 9 13 13 C 1.52997 * 109.47299 * 172.32010 * 11 10 9 14 14 C 1.53004 * 109.47148 * 52.31794 * 11 10 9 15 15 C 1.50701 * 109.47145 * 180.02562 * 14 11 10 16 16 H 1.07998 * 119.99940 * 0.02562 * 15 14 11 17 17 C 1.37874 * 119.99653 * 180.02562 * 15 14 11 18 18 N 1.31516 * 120.00421 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99679 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46898 * 269.99695 * 19 17 15 21 21 H 1.48495 * 109.47351 * 29.99323 * 19 17 15 22 22 H 1.48495 * 109.47446 * 149.99816 * 19 17 15 23 23 C 1.48560 * 104.22557 * 39.48254 * 9 8 7 24 24 H 1.09001 * 109.47174 * 300.00270 * 1 2 3 25 25 H 1.09004 * 109.47280 * 60.00390 * 1 2 3 26 26 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47082 * 299.32299 * 6 5 3 28 28 H 1.09000 * 109.47359 * 59.32675 * 6 5 3 29 29 H 1.09002 * 109.47125 * 179.32964 * 6 5 3 30 30 H 1.09003 * 110.32663 * 122.21004 * 7 5 3 31 31 H 1.08993 * 110.41369 * 0.04349 * 7 5 3 32 32 H 1.08997 * 110.41855 * 217.37048 * 8 7 5 33 33 H 1.09000 * 110.50853 * 94.97685 * 8 7 5 34 34 H 1.09002 * 109.47133 * 319.67922 * 10 9 8 35 35 H 1.09004 * 109.46712 * 199.68548 * 10 9 8 36 36 H 1.09006 * 109.47135 * 207.03845 * 12 11 10 37 37 H 1.09003 * 109.47228 * 327.03587 * 12 11 10 38 38 H 1.09003 * 109.47233 * 87.04098 * 12 11 10 39 39 H 1.09006 * 109.47222 * 305.98283 * 13 11 10 40 40 H 1.09001 * 109.47198 * 65.98034 * 13 11 10 41 41 H 1.08996 * 109.47318 * 185.98957 * 13 11 10 42 42 H 1.09003 * 109.47019 * 60.00104 * 14 11 10 43 43 H 1.09002 * 109.47122 * 300.00006 * 14 11 10 44 44 H 0.97000 * 119.99878 * 0.02562 * 18 17 15 45 45 H 1.09000 * 110.41259 * 79.29482 * 23 9 8 46 46 H 1.09000 * 110.40966 * 201.74369 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1333 0.6006 -1.2502 7 6 4.1370 0.6129 1.2716 8 6 4.8936 1.7406 2.0060 9 7 5.2319 2.7196 0.9411 10 6 5.5001 4.0464 1.5118 11 6 6.9216 4.0810 2.0764 12 6 7.0099 3.1566 3.2924 13 6 7.2690 5.5106 2.4964 14 6 7.9075 3.6102 1.0052 15 6 9.3076 3.6437 1.5616 16 1 9.4773 3.9678 2.5778 17 6 10.3719 3.2604 0.7734 18 7 10.1653 2.8652 -0.4638 19 14 12.1074 3.3012 1.4633 20 1 12.7130 4.6315 1.2013 21 1 12.0639 3.0568 2.9274 22 1 12.9248 2.2478 0.8097 23 6 4.0260 2.7469 0.0739 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.8418 -0.4497 -1.2605 28 1 3.7415 1.0952 -2.1390 29 1 5.2207 0.6757 -1.2422 30 1 4.8226 -0.1913 1.0045 31 1 3.3298 0.2297 1.8958 32 1 5.8015 1.3517 2.4672 33 1 4.2541 2.2027 2.7581 34 1 4.7867 4.2494 2.3106 35 1 5.3996 4.8035 0.7340 36 1 7.7949 3.5098 3.9611 37 1 6.0559 3.1575 3.8196 38 1 7.2420 2.1438 2.9628 39 1 7.1037 6.1862 1.6571 40 1 6.6357 5.8078 3.3322 41 1 8.3152 5.5564 2.7988 42 1 7.8446 4.2688 0.1389 43 1 7.6600 2.5917 0.7061 44 1 9.2641 2.8437 -0.8220 45 1 3.2491 3.3660 0.5225 46 1 4.2806 3.1155 -0.9198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093814127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:45 Heat of formation + Delta-G solvation = -96.722554 kcal Electronic energy + Delta-G solvation = -23931.531257 eV Core-core repulsion = 20627.784275 eV Total energy + Delta-G solvation = -3303.746982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03257 -39.04139 -36.84074 -36.26168 -33.13434 -31.99297 -29.75428 -28.05975 -26.83621 -26.54296 -26.19913 -24.87843 -22.93507 -22.52170 -21.06167 -19.71381 -18.31174 -17.34473 -16.79134 -16.61247 -16.28705 -15.39731 -14.82117 -14.38335 -13.90353 -13.74048 -13.63396 -13.59033 -13.38146 -13.00685 -12.70962 -12.58144 -12.27838 -12.08083 -11.93849 -11.65251 -11.47366 -11.35789 -11.13769 -11.03999 -11.01523 -10.81621 -10.78893 -10.65814 -10.43105 -10.22660 -10.06741 -9.93161 -9.68251 -9.14263 -8.26798 -8.17086 -8.01303 -6.16653 -3.83090 2.04359 2.49212 3.50719 3.54110 3.69323 4.20435 4.38887 4.55313 4.66733 4.71638 4.84519 4.91474 4.92969 5.25398 5.31251 5.33549 5.45533 5.58089 5.60528 5.62402 5.76322 5.83141 5.86978 5.90814 5.94661 6.03460 6.09974 6.13111 6.18041 6.21808 6.27885 6.37661 6.43161 6.66599 6.72881 7.02407 7.10158 7.14900 7.30324 7.45244 7.57970 7.71440 7.91795 8.45584 8.68476 9.10350 9.87223 11.23887 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026754 B = 0.004072 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.312595 B = 6873.872900 C = 7332.851102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.474 3.526 4 O -0.508 6.508 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.110 4.110 8 C 0.026 3.974 9 N -0.488 5.488 10 C 0.058 3.942 11 C -0.051 4.051 12 C -0.122 4.122 13 C -0.129 4.129 14 C 0.034 3.966 15 C -0.590 4.590 16 H 0.047 0.953 17 C 0.012 3.988 18 N -0.920 5.920 19 Si 1.064 2.936 20 H -0.291 1.291 21 H -0.291 1.291 22 H -0.287 1.287 23 C 0.046 3.954 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.026 0.974 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.026 0.974 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.029 0.971 41 H 0.070 0.930 42 H -0.003 1.003 43 H 0.026 0.974 44 H 0.270 0.730 45 H 0.057 0.943 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.255 -5.507 2.498 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.316 3.684 4 O -0.395 6.395 5 C -0.057 4.057 6 C -0.190 4.190 7 C -0.148 4.148 8 C -0.101 4.101 9 N -0.211 5.211 10 C -0.070 4.070 11 C -0.051 4.051 12 C -0.179 4.179 13 C -0.186 4.186 14 C -0.003 4.003 15 C -0.629 4.629 16 H 0.065 0.935 17 C -0.191 4.191 18 N -0.557 5.557 19 Si 0.894 3.106 20 H -0.218 1.218 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.082 4.082 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.016 0.984 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.417 -5.655 1.838 16.524 hybrid contribution -2.666 0.768 0.843 2.900 sum -18.083 -4.887 2.680 18.922 Atomic orbital electron populations 1.23264 0.76658 1.03617 1.02465 1.86529 1.23104 1.33443 1.84014 1.23813 0.91905 0.81172 0.71483 1.90644 1.67087 1.36422 1.45346 1.21271 0.85744 0.99000 0.99713 1.21841 1.03155 1.00007 0.93989 1.22462 0.99721 0.98863 0.93779 1.23459 0.99902 0.93058 0.93730 1.65433 1.31827 1.07913 1.15932 1.22492 0.97684 0.89525 0.97338 1.20462 0.92983 0.94802 0.96864 1.21903 0.98565 1.00339 0.97082 1.21793 1.01990 0.95873 0.98986 1.19146 0.92622 0.96339 0.92175 1.22154 0.92692 1.47677 1.00355 0.93474 1.25661 1.04003 0.94290 0.95116 1.70711 1.25102 1.44862 1.15008 0.83615 0.75639 0.76538 0.74810 1.21827 1.21741 1.21271 1.23156 0.92552 0.92418 1.00090 0.92034 0.91954 0.88090 0.91533 0.92348 0.89402 0.89187 0.91196 0.88254 0.94290 0.95603 0.91554 0.93288 0.95516 0.92212 0.93986 0.95215 0.91154 0.98437 0.95526 0.91926 0.92496 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.35 -4.04 10.47 -39.26 -0.41 -4.45 16 3 C 0.47 6.30 6.38 36.01 0.23 6.53 16 4 O -0.51 -7.94 15.21 -18.75 -0.29 -8.23 16 5 C -0.06 -0.72 0.97 -154.28 -0.15 -0.87 16 6 C -0.13 -1.57 8.19 37.16 0.30 -1.27 16 7 C -0.11 -1.38 6.26 -25.35 -0.16 -1.54 16 8 C 0.03 0.39 4.94 -2.18 -0.01 0.37 16 9 N -0.49 -8.15 4.22 -229.97 -0.97 -9.12 16 10 C 0.06 1.01 3.99 -3.82 -0.02 1.00 16 11 C -0.05 -1.02 0.61 -154.51 -0.09 -1.11 16 12 C -0.12 -2.29 6.65 37.16 0.25 -2.04 16 13 C -0.13 -2.47 8.17 37.16 0.30 -2.17 16 14 C 0.03 0.85 2.96 -27.88 -0.08 0.77 16 15 C -0.59 -16.30 7.72 -34.44 -0.27 -16.57 16 16 H 0.05 1.29 6.09 -52.49 -0.32 0.97 16 17 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 18 N -0.92 -28.26 13.65 55.43 0.76 -27.51 16 19 Si 1.06 25.62 29.90 -169.99 -5.08 20.54 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 C 0.05 0.69 5.28 -2.18 -0.01 0.68 16 24 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.07 7.71 -51.93 -0.40 0.67 16 31 H 0.07 0.79 7.69 -51.93 -0.40 0.39 16 32 H 0.10 1.55 5.53 -51.93 -0.29 1.26 16 33 H 0.04 0.55 7.54 -51.93 -0.39 0.16 16 34 H 0.03 0.42 7.44 -51.93 -0.39 0.04 16 35 H 0.07 1.17 7.99 -51.93 -0.41 0.76 16 36 H 0.05 0.95 7.41 -51.93 -0.38 0.56 16 37 H 0.03 0.43 7.01 -51.93 -0.36 0.06 16 38 H 0.06 1.18 6.11 -51.93 -0.32 0.86 16 39 H 0.04 0.79 8.12 -51.93 -0.42 0.36 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 1.48 6.45 -51.93 -0.33 1.14 16 42 H 0.00 -0.07 8.01 -51.93 -0.42 -0.49 16 43 H 0.03 0.70 7.25 -51.93 -0.38 0.33 16 44 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 45 H 0.06 0.89 6.79 -51.93 -0.35 0.54 16 46 H 0.09 1.33 7.86 -51.93 -0.41 0.92 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -31.68 352.13 -7.44 -39.12 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.03 Total: -1.05 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 1.27 Total: -14.61 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.21 Total: -36.63 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.70 Total: -12.68 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.68 -7.44 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093814127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.600 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds