Wall clock time and date at job start Tue Mar 31 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46963 * 2 1 4 4 C 1.53002 * 109.47035 * 120.00280 * 2 1 3 5 5 C 1.52996 * 109.47167 * 175.00024 * 4 2 1 6 6 N 1.46502 * 109.47452 * 179.97438 * 5 4 2 7 7 C 1.46499 * 119.99901 * 264.42905 * 6 5 4 8 8 C 1.50699 * 109.47233 * 264.96012 * 7 6 5 9 9 H 1.08000 * 119.99861 * 0.02562 * 8 7 6 10 10 C 1.37868 * 119.99839 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00383 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00086 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47025 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47381 * 119.99770 * 12 10 8 15 15 H 1.48494 * 109.47474 * 240.00558 * 12 10 8 16 16 C 1.34774 * 119.99671 * 84.42459 * 6 5 4 17 17 O 1.21277 * 120.00303 * 6.07072 * 16 6 5 18 18 C 1.50705 * 119.99611 * 186.06395 * 16 6 5 19 19 H 1.08995 * 109.57794 * 312.32473 * 18 16 6 20 20 C 1.53179 * 109.52034 * 192.16203 * 18 16 6 21 21 C 1.53175 * 109.03401 * 183.11611 * 20 18 16 22 22 C 1.53094 * 109.16529 * 56.98474 * 21 20 18 23 23 O 1.42908 * 109.41057 * 302.39083 * 22 21 20 24 24 C 1.42900 * 114.09868 * 61.15738 * 23 22 21 25 25 H 1.09002 * 109.47382 * 299.99690 * 1 2 3 26 26 H 1.09004 * 109.47224 * 59.99968 * 1 2 3 27 27 H 1.08997 * 109.47234 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46838 * 239.99816 * 2 1 3 29 29 H 1.08996 * 109.47002 * 60.00381 * 3 2 1 30 30 H 1.09007 * 109.46831 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47601 * 299.99733 * 3 2 1 32 32 H 1.08996 * 109.47263 * 54.99600 * 4 2 1 33 33 H 1.09004 * 109.46800 * 294.99792 * 4 2 1 34 34 H 1.09006 * 109.47244 * 59.99519 * 5 4 2 35 35 H 1.09002 * 109.47162 * 300.00134 * 5 4 2 36 36 H 1.09000 * 109.47213 * 24.96806 * 7 6 5 37 37 H 1.09001 * 109.47079 * 144.95902 * 7 6 5 38 38 H 0.97004 * 120.00135 * 180.02562 * 11 10 8 39 39 H 1.08993 * 109.54761 * 302.98474 * 20 18 16 40 40 H 1.09004 * 109.53888 * 63.25289 * 20 18 16 41 41 H 1.09003 * 109.52596 * 176.88841 * 21 20 18 42 42 H 1.09002 * 109.52496 * 297.07274 * 21 20 18 43 43 H 1.08995 * 109.48113 * 182.41129 * 22 21 20 44 44 H 1.08989 * 109.47940 * 62.37145 * 22 21 20 45 45 H 1.09000 * 109.47692 * 178.85851 * 24 23 22 46 46 H 1.08994 * 109.47987 * 58.82349 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5647 -0.8311 1.1880 6 7 4.0532 -1.5213 2.3844 7 6 4.5168 -0.7472 3.5385 8 6 6.0127 -0.5808 3.4637 9 1 6.5630 -1.0086 2.6387 10 6 6.6787 0.1183 4.4479 11 7 6.0085 0.6396 5.4523 12 14 8.5329 0.3251 4.3548 13 1 9.0456 -0.3499 3.1354 14 1 8.8675 1.7708 4.2974 15 1 9.1595 -0.2808 5.5570 16 6 4.0759 -2.8682 2.4232 17 8 3.7971 -3.5083 1.4316 18 6 4.4478 -3.5791 3.6990 19 1 5.3528 -3.1354 4.1138 20 6 4.6929 -5.0624 3.4057 21 6 4.9934 -5.7886 4.7205 22 6 3.8293 -5.5729 5.6912 23 8 3.6353 -4.1720 5.8964 24 6 3.3048 -3.4487 4.7091 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.9994 0.1675 1.1420 35 1 3.8531 -1.3940 0.3002 36 1 4.0414 0.2336 3.5329 37 1 4.2551 -1.2724 4.4571 38 1 6.4771 1.1317 6.1445 39 1 3.8046 -5.4947 2.9452 40 1 5.5421 -5.1650 2.7301 41 1 5.1146 -6.8547 4.5284 42 1 5.9095 -5.3896 5.1559 43 1 4.0568 -6.0517 6.6436 44 1 2.9219 -6.0081 5.2729 45 1 3.1544 -2.3973 4.9541 46 1 2.3904 -3.8561 4.2780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103439979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:08 Heat of formation + Delta-G solvation = -114.841144 kcal Electronic energy + Delta-G solvation = -23953.363341 eV Core-core repulsion = 20648.830678 eV Total energy + Delta-G solvation = -3304.532663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.88753 -38.19730 -36.53518 -34.76996 -33.21942 -32.53882 -31.20638 -29.02158 -27.09589 -26.84393 -24.85814 -24.22409 -23.07798 -22.49852 -20.12172 -19.73653 -18.26329 -16.75791 -16.23038 -16.02594 -15.73842 -15.30893 -14.98683 -14.56444 -14.48606 -14.11191 -13.79742 -13.44765 -13.19667 -12.88184 -12.49467 -12.41360 -12.32535 -12.20016 -12.07480 -11.64826 -11.47178 -11.17831 -11.13536 -10.90640 -10.86939 -10.72505 -10.61694 -10.56073 -10.46748 -10.24350 -10.06083 -9.99002 -9.67526 -9.30121 -8.90359 -8.54608 -7.69731 -6.18048 -4.25411 3.21900 3.30239 3.32731 3.38520 3.86009 4.21772 4.34601 4.99731 5.05282 5.08883 5.13261 5.14200 5.15469 5.19515 5.36070 5.43302 5.54395 5.65365 5.69319 5.71930 5.83399 5.88917 5.92870 5.96417 5.99736 6.00518 6.06902 6.11697 6.22894 6.24331 6.28638 6.35872 6.38602 6.47327 6.61473 6.65515 6.70912 6.80400 7.20135 7.44609 7.56113 7.77170 8.06255 8.33021 8.79437 9.01652 9.42608 10.88494 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.007375 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.619077 B = 3795.468755 C = 5878.366264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.595 5.595 7 C 0.231 3.769 8 C -0.539 4.539 9 H 0.060 0.940 10 C 0.067 3.933 11 N -0.888 5.888 12 Si 0.894 3.106 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.525 3.475 17 O -0.574 6.574 18 C -0.142 4.142 19 H 0.120 0.880 20 C -0.100 4.100 21 C -0.156 4.156 22 C 0.058 3.942 23 O -0.374 6.374 24 C 0.075 3.925 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.265 0.735 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.108 0.892 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -5.356 -3.764 9.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.325 5.325 7 C 0.111 3.889 8 C -0.578 4.578 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.526 5.526 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.313 3.687 17 O -0.455 6.455 18 C -0.163 4.163 19 H 0.138 0.862 20 C -0.138 4.138 21 C -0.194 4.194 22 C -0.019 4.019 23 O -0.293 6.293 24 C -0.002 4.002 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.126 0.874 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.317 -5.451 -3.910 9.927 hybrid contribution 1.179 0.214 -0.187 1.213 sum -6.138 -5.237 -4.097 9.049 Atomic orbital electron populations 1.21821 0.95589 1.01428 1.01349 1.21042 0.95357 0.96357 0.98485 1.21902 1.01629 0.95823 1.01316 1.21998 0.96572 1.00414 0.97617 1.21356 0.92848 0.97639 0.88596 1.48256 1.61202 1.05425 1.17599 1.19609 0.94834 0.91601 0.82832 1.21514 0.92167 1.35212 1.08898 0.92159 1.24921 0.98642 0.95072 0.95020 1.69923 1.35891 1.35301 1.11458 0.86493 0.85196 0.77946 0.78184 1.19717 1.20850 1.20745 1.20230 0.76631 0.82493 0.89311 1.90569 1.51685 1.66498 1.36748 1.21924 1.02862 0.96546 0.94993 0.86205 1.21372 1.02535 0.93366 0.96484 1.22217 0.99937 1.00624 0.96576 1.22568 0.96825 0.82954 0.99521 1.87992 1.90640 1.19189 1.31439 1.22596 0.94475 0.97969 0.85125 0.92788 0.93069 0.92936 0.91356 0.92616 0.92104 0.93238 0.92084 0.91832 0.90282 0.91443 0.94561 0.93740 0.92537 0.91428 0.91359 0.91115 0.90795 0.89218 0.93571 0.87389 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 37.16 0.34 -1.29 16 2 C -0.09 -1.21 2.92 -90.62 -0.26 -1.48 16 3 C -0.15 -1.84 8.95 37.16 0.33 -1.51 16 4 C -0.13 -1.99 4.97 -26.73 -0.13 -2.13 16 5 C 0.12 2.18 5.14 -4.04 -0.02 2.16 16 6 N -0.60 -12.41 2.48 -175.06 -0.43 -12.84 16 7 C 0.23 5.38 4.73 -5.19 -0.02 5.36 16 8 C -0.54 -13.98 8.78 -34.44 -0.30 -14.28 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 12 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.53 10.97 6.82 -10.98 -0.07 10.90 16 17 O -0.57 -12.89 15.57 5.56 0.09 -12.80 16 18 C -0.14 -2.69 1.88 -91.63 -0.17 -2.86 16 19 H 0.12 2.56 7.00 -51.93 -0.36 2.19 16 20 C -0.10 -1.64 4.74 -26.55 -0.13 -1.76 16 21 C -0.16 -2.14 6.14 -26.59 -0.16 -2.30 16 22 C 0.06 0.80 6.84 37.21 0.25 1.05 16 23 O -0.37 -6.52 10.77 -35.23 -0.38 -6.90 16 24 C 0.08 1.33 5.84 37.21 0.22 1.55 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.79 6.57 -51.92 -0.34 0.45 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.44 6.45 -51.93 -0.34 1.10 16 35 H 0.07 1.27 7.52 -51.93 -0.39 0.88 16 36 H 0.04 0.89 8.03 -51.93 -0.42 0.47 16 37 H 0.04 1.06 4.56 -51.93 -0.24 0.83 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.57 8.14 -51.94 -0.42 0.15 16 45 H 0.11 2.03 5.86 -51.93 -0.30 1.72 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 359.33 15.07 5.41 5.41 Total: -1.00 -28.57 359.33 -8.09 -36.66 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.26 Total: 3.39 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.23 Total: -4.94 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.30 Total: -36.44 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.29 Total: -19.70 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.57 -8.09 -36.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.182 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds