Wall clock time and date at job start Tue Mar 31 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46963 * 2 1 4 4 C 1.53002 * 109.47035 * 120.00280 * 2 1 3 5 5 C 1.52996 * 109.47167 * 175.00024 * 4 2 1 6 6 N 1.46502 * 109.47452 * 179.97438 * 5 4 2 7 7 C 1.46499 * 119.99901 * 264.42905 * 6 5 4 8 8 C 1.50699 * 109.47233 * 264.96012 * 7 6 5 9 9 H 1.08000 * 119.99861 * 0.02562 * 8 7 6 10 10 C 1.37868 * 119.99839 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00383 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00086 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47025 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47381 * 119.99770 * 12 10 8 15 15 H 1.48494 * 109.47474 * 240.00558 * 12 10 8 16 16 C 1.34774 * 119.99671 * 84.42459 * 6 5 4 17 17 O 1.21277 * 120.00303 * 6.07072 * 16 6 5 18 18 C 1.50705 * 119.99611 * 186.06395 * 16 6 5 19 19 H 1.08995 * 109.57794 * 312.32473 * 18 16 6 20 20 C 1.53179 * 109.52034 * 192.16203 * 18 16 6 21 21 C 1.53175 * 109.03401 * 183.11611 * 20 18 16 22 22 C 1.53094 * 109.16529 * 56.98474 * 21 20 18 23 23 O 1.42908 * 109.41057 * 302.39083 * 22 21 20 24 24 C 1.42900 * 114.09868 * 61.15738 * 23 22 21 25 25 H 1.09002 * 109.47382 * 299.99690 * 1 2 3 26 26 H 1.09004 * 109.47224 * 59.99968 * 1 2 3 27 27 H 1.08997 * 109.47234 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46838 * 239.99816 * 2 1 3 29 29 H 1.08996 * 109.47002 * 60.00381 * 3 2 1 30 30 H 1.09007 * 109.46831 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47601 * 299.99733 * 3 2 1 32 32 H 1.08996 * 109.47263 * 54.99600 * 4 2 1 33 33 H 1.09004 * 109.46800 * 294.99792 * 4 2 1 34 34 H 1.09006 * 109.47244 * 59.99519 * 5 4 2 35 35 H 1.09002 * 109.47162 * 300.00134 * 5 4 2 36 36 H 1.09000 * 109.47213 * 24.96806 * 7 6 5 37 37 H 1.09001 * 109.47079 * 144.95902 * 7 6 5 38 38 H 0.97004 * 120.00135 * 180.02562 * 11 10 8 39 39 H 1.08993 * 109.54761 * 302.98474 * 20 18 16 40 40 H 1.09004 * 109.53888 * 63.25289 * 20 18 16 41 41 H 1.09003 * 109.52596 * 176.88841 * 21 20 18 42 42 H 1.09002 * 109.52496 * 297.07274 * 21 20 18 43 43 H 1.08995 * 109.48113 * 182.41129 * 22 21 20 44 44 H 1.08989 * 109.47940 * 62.37145 * 22 21 20 45 45 H 1.09000 * 109.47692 * 178.85851 * 24 23 22 46 46 H 1.08994 * 109.47987 * 58.82349 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5647 -0.8311 1.1880 6 7 4.0532 -1.5213 2.3844 7 6 4.5168 -0.7472 3.5385 8 6 6.0127 -0.5808 3.4637 9 1 6.5630 -1.0086 2.6387 10 6 6.6787 0.1183 4.4479 11 7 6.0085 0.6396 5.4523 12 14 8.5329 0.3251 4.3548 13 1 9.0456 -0.3499 3.1354 14 1 8.8675 1.7708 4.2974 15 1 9.1595 -0.2808 5.5570 16 6 4.0759 -2.8682 2.4232 17 8 3.7971 -3.5083 1.4316 18 6 4.4478 -3.5791 3.6990 19 1 5.3528 -3.1354 4.1138 20 6 4.6929 -5.0624 3.4057 21 6 4.9934 -5.7886 4.7205 22 6 3.8293 -5.5729 5.6912 23 8 3.6353 -4.1720 5.8964 24 6 3.3048 -3.4487 4.7091 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1370 34 1 3.9994 0.1675 1.1420 35 1 3.8531 -1.3940 0.3002 36 1 4.0414 0.2336 3.5329 37 1 4.2551 -1.2724 4.4571 38 1 6.4771 1.1317 6.1445 39 1 3.8046 -5.4947 2.9452 40 1 5.5421 -5.1650 2.7301 41 1 5.1146 -6.8547 4.5284 42 1 5.9095 -5.3896 5.1559 43 1 4.0568 -6.0517 6.6436 44 1 2.9219 -6.0081 5.2729 45 1 3.1544 -2.3973 4.9541 46 1 2.3904 -3.8561 4.2780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103439979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:07 Heat of formation + Delta-G solvation = -129.975154 kcal Electronic energy + Delta-G solvation = -23954.019601 eV Core-core repulsion = 20648.830678 eV Total energy + Delta-G solvation = -3305.188923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44529 -39.60544 -37.84607 -36.43346 -34.61636 -34.44955 -32.51377 -30.49882 -28.76143 -27.99045 -26.13264 -25.69396 -24.88822 -23.89427 -21.42236 -20.88827 -19.89526 -18.69672 -17.91333 -17.51396 -17.16748 -16.74874 -16.37563 -16.20862 -15.91201 -15.40103 -15.13003 -14.68700 -14.55355 -14.44013 -14.06169 -13.98743 -13.69811 -13.58083 -13.23172 -13.12227 -12.91924 -12.73426 -12.64897 -12.51627 -12.28786 -12.13904 -12.00044 -11.87279 -11.81250 -11.61023 -11.54863 -11.40042 -11.31511 -10.78006 -10.60544 -10.39012 -9.45536 -8.21623 -6.36040 1.37784 1.40881 1.50848 1.67731 2.24831 2.42133 2.93297 3.08413 3.61898 3.76176 3.87164 3.92675 3.97053 4.02715 4.07369 4.15364 4.22738 4.36899 4.47054 4.57035 4.64955 4.66543 4.68362 4.76497 4.82168 4.85744 4.90702 4.93785 4.95774 5.03472 5.04300 5.11429 5.11925 5.15082 5.26912 5.32230 5.35669 5.46938 5.51144 5.64048 5.84844 6.05432 6.20223 6.53035 6.79415 7.26566 7.38556 8.83825 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.007375 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.619077 B = 3795.468755 C = 5878.366264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.116 4.116 5 C 0.116 3.884 6 N -0.598 5.598 7 C 0.247 3.753 8 C -0.549 4.549 9 H 0.047 0.953 10 C 0.025 3.975 11 N -0.914 5.914 12 Si 0.953 3.047 13 H -0.274 1.274 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.521 3.479 17 O -0.590 6.590 18 C -0.139 4.139 19 H 0.091 0.909 20 C -0.097 4.097 21 C -0.149 4.149 22 C 0.050 3.950 23 O -0.394 6.394 24 C 0.084 3.916 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.022 0.978 37 H 0.039 0.961 38 H 0.268 0.732 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 -6.120 -3.943 10.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.154 4.154 5 C -0.007 4.007 6 N -0.327 5.327 7 C 0.127 3.873 8 C -0.588 4.588 9 H 0.065 0.935 10 C -0.176 4.176 11 N -0.553 5.553 12 Si 0.779 3.221 13 H -0.198 1.198 14 H -0.201 1.201 15 H -0.202 1.202 16 C 0.310 3.690 17 O -0.472 6.472 18 C -0.160 4.160 19 H 0.110 0.890 20 C -0.135 4.135 21 C -0.187 4.187 22 C -0.026 4.026 23 O -0.313 6.313 24 C 0.007 3.993 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.613 -6.216 -4.097 10.648 hybrid contribution 1.265 0.424 -0.151 1.343 sum -6.348 -5.792 -4.248 9.586 Atomic orbital electron populations 1.21786 0.93887 1.01774 1.02353 1.21035 0.96740 0.96340 0.96822 1.21883 1.00841 0.95513 1.02234 1.21885 0.94317 1.00151 0.99062 1.21501 0.94762 0.97067 0.87324 1.48278 1.61170 1.05635 1.17665 1.19256 0.93510 0.90995 0.83549 1.21664 0.93400 1.35159 1.08529 0.93494 1.25593 1.02541 0.94769 0.94675 1.70002 1.37441 1.35870 1.12017 0.85582 0.80449 0.78057 0.78060 1.19850 1.20130 1.20189 1.20594 0.76174 0.82386 0.89833 1.90547 1.52592 1.66652 1.37458 1.21895 1.02027 0.97953 0.94144 0.89035 1.21376 1.02292 0.91737 0.98052 1.22204 0.99529 1.02133 0.94794 1.22888 0.97542 0.81035 1.01096 1.87964 1.90758 1.21390 1.31162 1.22396 0.94409 0.97415 0.85053 0.92652 0.91210 0.92952 0.91232 0.92856 0.93326 0.91160 0.93146 0.92310 0.90469 0.92093 0.95950 0.94295 0.92255 0.91127 0.92210 0.87788 0.91757 0.86595 0.91828 0.89257 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.19 71.98 0.66 -2.27 16 2 C -0.09 -2.26 2.92 -10.79 -0.03 -2.29 16 3 C -0.15 -3.49 8.95 71.98 0.64 -2.85 16 4 C -0.12 -3.64 4.97 30.59 0.15 -3.49 16 5 C 0.12 4.35 5.14 86.38 0.44 4.80 16 6 N -0.60 -25.69 2.48 -826.15 -2.05 -27.74 16 7 C 0.25 11.93 4.73 85.63 0.41 12.33 16 8 C -0.55 -29.11 8.78 25.60 0.22 -28.89 16 9 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 10 C 0.03 1.34 5.46 84.65 0.46 1.80 16 11 N -0.91 -50.63 13.29 21.44 0.28 -50.35 16 12 Si 0.95 42.46 29.54 68.60 2.03 44.48 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 14 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.52 22.21 6.82 87.66 0.60 22.81 16 17 O -0.59 -26.72 15.57 -3.02 -0.05 -26.76 16 18 C -0.14 -5.33 1.88 -11.45 -0.02 -5.35 16 19 H 0.09 4.05 7.00 -2.39 -0.02 4.03 16 20 C -0.10 -3.10 4.74 30.71 0.15 -2.96 16 21 C -0.15 -3.79 6.14 30.68 0.19 -3.60 16 22 C 0.05 1.25 6.84 72.01 0.49 1.75 16 23 O -0.39 -13.41 10.77 -148.98 -1.60 -15.01 16 24 C 0.08 3.00 5.84 72.01 0.42 3.42 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.25 6.57 -2.38 -0.02 1.24 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.08 2.89 6.45 -2.38 -0.02 2.88 16 35 H 0.06 2.35 7.52 -2.39 -0.02 2.33 16 36 H 0.02 1.13 8.03 -2.39 -0.02 1.12 16 37 H 0.04 1.94 4.56 -2.39 -0.01 1.93 16 38 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.07 2.22 7.87 -2.39 -0.02 2.20 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.09 3.47 5.86 -2.39 -0.01 3.46 16 46 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -61.00 359.33 4.32 -56.67 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.93 Total: 23.49 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 4.79 Total: -4.78 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.76 Total: -78.08 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.65 Total: -41.77 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -61.00 4.32 -56.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.301 kcal (2) G-P(sol) polarization free energy of solvation -60.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds