Wall clock time and date at job start Tue Mar 31 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47031 * 2 1 4 4 C 1.53003 * 109.47354 * 120.00237 * 2 1 3 5 5 C 1.53001 * 109.47266 * 175.00419 * 4 2 1 6 6 N 1.46495 * 109.46971 * 179.97438 * 5 4 2 7 7 C 1.46501 * 120.00151 * 269.99590 * 6 5 4 8 8 C 1.50696 * 109.47003 * 270.00358 * 7 6 5 9 9 H 1.07996 * 120.00571 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99934 * 179.97438 * 8 7 6 11 11 N 1.31522 * 119.99776 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00304 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47155 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47098 * 120.00149 * 12 10 8 15 15 H 1.48498 * 109.47017 * 239.99723 * 12 10 8 16 16 C 1.34780 * 119.99833 * 90.00246 * 6 5 4 17 17 O 1.21281 * 119.99699 * 180.02562 * 16 6 5 18 18 C 1.50700 * 120.00301 * 359.97438 * 16 6 5 19 19 O 1.42899 * 109.47140 * 180.02562 * 18 16 6 20 20 C 1.42903 * 113.99629 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.46726 * 180.02562 * 20 19 18 22 22 C 1.53003 * 117.49371 * 243.61887 * 21 20 19 23 23 C 1.53001 * 117.49608 * 174.99962 * 21 20 19 24 24 H 1.08992 * 109.47586 * 299.99557 * 1 2 3 25 25 H 1.08999 * 109.47460 * 60.00226 * 1 2 3 26 26 H 1.09002 * 109.46854 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47631 * 240.00423 * 2 1 3 28 28 H 1.09001 * 109.47466 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47284 * 300.00402 * 3 2 1 30 30 H 1.09000 * 109.46967 * 60.00335 * 3 2 1 31 31 H 1.09001 * 109.46844 * 54.99902 * 4 2 1 32 32 H 1.09001 * 109.46407 * 294.99908 * 4 2 1 33 33 H 1.09000 * 109.47181 * 59.99637 * 5 4 2 34 34 H 1.09001 * 109.46841 * 300.00084 * 5 4 2 35 35 H 1.09001 * 109.46980 * 30.00425 * 7 6 5 36 36 H 1.08997 * 109.47188 * 150.00080 * 7 6 5 37 37 H 0.97001 * 119.99903 * 180.02562 * 11 10 8 38 38 H 1.09007 * 109.46405 * 60.00333 * 18 16 6 39 39 H 1.09004 * 109.47198 * 300.00818 * 18 16 6 40 40 H 1.09002 * 109.47382 * 59.99956 * 20 19 18 41 41 H 1.09001 * 109.46938 * 299.99942 * 20 19 18 42 42 H 1.08995 * 115.55630 * 29.32572 * 21 20 19 43 43 H 1.08998 * 117.50656 * 0.02562 * 22 21 20 44 44 H 1.09001 * 117.49674 * 145.02590 * 22 21 20 45 45 H 1.09003 * 117.49710 * 214.97494 * 23 21 20 46 46 H 1.08998 * 117.50185 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1880 6 7 4.0532 -1.5211 2.3844 7 6 4.4017 -0.7529 3.5822 8 6 5.8555 -0.3610 3.5222 9 1 6.4597 -0.6550 2.6768 10 6 6.4144 0.3730 4.5469 11 7 5.6788 0.7307 5.5768 12 14 8.2168 0.8583 4.4730 13 1 8.8189 0.3368 3.2198 14 1 8.3323 2.3386 4.4984 15 1 8.9318 0.2859 5.6419 16 6 4.1821 -2.8627 2.3830 17 8 4.5859 -3.4340 3.3737 18 6 3.8233 -3.6530 1.1511 19 8 4.0432 -5.0435 1.3963 20 6 3.7325 -5.8859 0.2846 21 6 4.0037 -7.3445 0.6587 22 6 5.0943 -8.0825 -0.1204 23 6 3.6212 -8.4183 -0.3619 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -1.7199 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 3.9994 0.1676 1.1421 34 1 3.8532 -1.3938 0.3002 35 1 3.7850 0.1446 3.6303 36 1 4.2259 -1.3624 4.4686 37 1 6.0719 1.2474 6.2975 38 1 4.4453 -3.3279 0.3170 39 1 2.7736 -3.4889 0.9071 40 1 4.3531 -5.6074 -0.5671 41 1 2.6812 -5.7680 0.0221 42 1 3.8861 -7.5889 1.7144 43 1 5.6188 -7.5288 -0.8992 44 1 5.6944 -8.8125 0.4227 45 1 3.2523 -9.3693 0.0225 46 1 3.1760 -8.0858 -1.2995 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103440212.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:15 Heat of formation + Delta-G solvation = -95.612114 kcal Electronic energy + Delta-G solvation = -22778.665278 eV Core-core repulsion = 19474.966448 eV Total energy + Delta-G solvation = -3303.698830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.91090 -39.18583 -38.00360 -37.29215 -36.06285 -34.68959 -31.02779 -29.97441 -28.56083 -27.92642 -27.04762 -24.80999 -24.20722 -23.23573 -21.70971 -20.82257 -20.07502 -18.64472 -18.36094 -17.62000 -17.26095 -17.03571 -16.51627 -16.01373 -15.73554 -15.63877 -15.15980 -14.87000 -14.61907 -14.38222 -14.23461 -13.71140 -13.42598 -13.40138 -13.25060 -13.08391 -12.89238 -12.66898 -12.62329 -12.37361 -12.28584 -12.14434 -12.05248 -11.82950 -11.57562 -11.48694 -11.39650 -11.36590 -11.21387 -10.65570 -10.56714 -10.48073 -9.45197 -8.23203 -6.37969 1.35225 1.38254 1.49764 1.74695 1.94094 2.37844 2.77198 3.04273 3.07143 3.61010 3.89485 3.92990 3.97258 4.00931 4.13171 4.16193 4.16527 4.24873 4.35503 4.36773 4.54271 4.54993 4.71275 4.74420 4.78616 4.85223 4.87101 4.98322 4.99859 5.02003 5.10591 5.17986 5.18153 5.23242 5.24084 5.26344 5.38818 5.52677 5.56042 5.60594 5.81965 6.05179 6.16349 6.69276 6.75384 7.26986 7.44699 8.84292 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.004970 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.114546 B = 5632.739017 C = 7923.451866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.127 4.127 5 C 0.104 3.896 6 N -0.598 5.598 7 C 0.264 3.736 8 C -0.543 4.543 9 H 0.054 0.946 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.968 3.032 13 H -0.266 1.266 14 H -0.267 1.267 15 H -0.283 1.283 16 C 0.492 3.508 17 O -0.589 6.589 18 C 0.060 3.940 19 O -0.400 6.400 20 C 0.088 3.912 21 C -0.181 4.181 22 C -0.182 4.182 23 C -0.149 4.149 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.025 0.975 36 H -0.007 1.007 37 H 0.267 0.733 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 -7.919 -19.736 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.210 4.210 4 C -0.166 4.166 5 C -0.018 4.018 6 N -0.329 5.329 7 C 0.143 3.857 8 C -0.581 4.581 9 H 0.072 0.928 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.792 3.208 13 H -0.191 1.191 14 H -0.192 1.192 15 H -0.209 1.209 16 C 0.280 3.720 17 O -0.469 6.469 18 C -0.019 4.019 19 O -0.319 6.319 20 C 0.012 3.988 21 C -0.199 4.199 22 C -0.219 4.219 23 C -0.186 4.186 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.043 0.957 36 H 0.011 0.989 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.125 0.875 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.129 -8.177 -18.887 22.514 hybrid contribution 0.904 0.572 0.845 1.363 sum -8.225 -7.605 -18.042 21.237 Atomic orbital electron populations 1.21819 0.94433 1.02096 1.01859 1.21042 0.96260 0.95989 0.97180 1.21932 1.01146 0.96241 1.01715 1.22066 0.94449 1.01119 0.98962 1.21908 0.94733 0.98740 0.86430 1.48182 1.63397 1.05449 1.15907 1.18703 0.94793 0.89544 0.82638 1.21736 0.96426 1.33901 1.06057 0.92809 1.25867 1.02999 0.95721 0.94548 1.70066 1.38142 1.38837 1.09767 0.85362 0.78936 0.78316 0.78161 1.19055 1.19202 1.20876 1.21093 0.78054 0.82854 0.89963 1.90653 1.47806 1.70659 1.37806 1.22290 1.03261 0.81893 0.94444 1.88000 1.88585 1.15799 1.39505 1.22281 1.00595 0.88006 0.87911 1.22134 1.07158 0.92219 0.98430 1.23166 0.92353 1.03411 1.02940 1.23072 0.97219 0.98564 0.99773 0.93782 0.91357 0.92129 0.88993 0.92877 0.91228 0.94035 0.91307 0.93756 0.90510 0.88130 0.95708 0.98873 0.92407 0.87900 0.87390 0.91420 0.90835 0.89087 0.87888 0.88657 0.87507 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.19 71.98 0.66 -1.69 16 2 C -0.09 -1.58 2.92 -10.79 -0.03 -1.61 16 3 C -0.15 -3.08 8.95 71.98 0.64 -2.43 16 4 C -0.13 -3.23 5.01 30.60 0.15 -3.07 16 5 C 0.10 3.16 4.97 86.38 0.43 3.59 16 6 N -0.60 -26.00 2.46 -826.17 -2.03 -28.03 16 7 C 0.26 14.71 5.16 85.63 0.44 15.15 16 8 C -0.54 -32.06 9.39 25.60 0.24 -31.82 16 9 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 10 C 0.01 0.44 5.46 84.65 0.46 0.91 16 11 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 12 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 16 C 0.49 21.97 7.75 87.66 0.68 22.65 16 17 O -0.59 -33.80 16.08 16.00 0.26 -33.55 16 18 C 0.06 1.82 4.97 71.24 0.35 2.17 16 19 O -0.40 -13.50 9.88 -129.94 -1.28 -14.79 16 20 C 0.09 1.95 6.22 71.98 0.45 2.40 16 21 C -0.18 -3.95 6.06 -10.79 -0.07 -4.02 16 22 C -0.18 -3.23 10.18 30.60 0.31 -2.92 16 23 C -0.15 -2.16 10.25 30.60 0.31 -1.85 16 24 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.05 1.15 6.56 -2.39 -0.02 1.14 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.61 7.22 -2.39 -0.02 1.59 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 2.51 6.49 -2.39 -0.02 2.49 16 34 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 35 H 0.02 1.40 8.07 -2.39 -0.02 1.38 16 36 H -0.01 -0.45 7.42 -2.39 -0.02 -0.46 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.10 2.45 7.40 -2.38 -0.02 2.44 16 39 H 0.11 2.45 7.18 -2.38 -0.02 2.43 16 40 H 0.07 1.23 7.88 -2.39 -0.02 1.21 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.10 1.64 8.03 -2.39 -0.02 1.62 16 44 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.11 1.33 8.14 -2.39 -0.02 1.32 16 46 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -79.69 375.55 5.22 -74.47 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.92 Total: 13.60 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.04 Total: -2.55 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.74 Total: -85.01 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -1.03 Total: -48.33 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -79.69 5.22 -74.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440212.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.140 kcal (2) G-P(sol) polarization free energy of solvation -79.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds