Wall clock time and date at job start Tue Mar 31 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47671 * 2 1 4 4 C 1.52998 * 109.46860 * 64.99417 * 3 2 1 5 5 C 1.53006 * 109.47337 * 184.88880 * 4 3 2 6 6 C 1.52998 * 109.47439 * 184.99702 * 3 2 1 7 7 N 1.46496 * 109.46709 * 63.73041 * 6 3 2 8 8 C 1.46509 * 120.00231 * 81.08453 * 7 6 3 9 9 C 1.50704 * 109.46925 * 36.04720 * 8 7 6 10 10 H 1.07997 * 119.99580 * 246.16644 * 9 8 7 11 11 C 1.37873 * 119.99898 * 66.43911 * 9 8 7 12 12 N 1.31515 * 119.99854 * 168.04385 * 11 9 8 13 13 Si 1.86802 * 120.00393 * 348.05039 * 11 9 8 14 14 H 1.48502 * 109.47319 * 87.52450 * 13 11 9 15 15 H 1.48500 * 109.47260 * 207.53037 * 13 11 9 16 16 H 1.48505 * 109.46766 * 327.52311 * 13 11 9 17 17 C 1.34772 * 120.00113 * 261.07772 * 7 6 3 18 18 O 1.21285 * 119.99787 * 3.64157 * 17 7 6 19 19 C 1.50701 * 120.00260 * 183.63047 * 17 7 6 20 20 H 1.08993 * 110.44132 * 319.40711 * 19 17 7 21 21 C 1.54809 * 110.49033 * 196.71291 * 19 17 7 22 22 C 1.54996 * 102.09449 * 220.44744 * 21 19 17 23 23 O 1.44379 * 103.48970 * 37.02180 * 22 21 19 24 24 C 1.43740 * 106.97836 * 319.94003 * 23 22 21 25 25 H 1.08994 * 109.46975 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46865 * 300.00187 * 1 2 3 27 27 H 1.08999 * 109.46774 * 60.00057 * 1 2 3 28 28 H 1.09001 * 109.47556 * 239.99617 * 2 1 3 29 29 H 1.09008 * 109.46702 * 119.99827 * 2 1 3 30 30 H 1.09003 * 109.46538 * 305.00217 * 3 2 1 31 31 H 1.08996 * 109.47818 * 304.88759 * 4 3 2 32 32 H 1.09004 * 109.47049 * 64.89611 * 4 3 2 33 33 H 1.09003 * 109.46950 * 64.01098 * 5 4 3 34 34 H 1.08994 * 109.47211 * 184.01581 * 5 4 3 35 35 H 1.09004 * 109.47002 * 304.02099 * 5 4 3 36 36 H 1.08994 * 109.46862 * 303.72825 * 6 3 2 37 37 H 1.09001 * 109.46931 * 183.72450 * 6 3 2 38 38 H 1.08999 * 109.47165 * 276.05022 * 8 7 6 39 39 H 1.09000 * 109.47383 * 156.04352 * 8 7 6 40 40 H 0.97006 * 120.00292 * 180.02562 * 12 11 9 41 41 H 1.09003 * 110.91022 * 338.64449 * 21 19 17 42 42 H 1.09002 * 110.90932 * 102.24915 * 21 19 17 43 43 H 1.08998 * 110.62049 * 278.52215 * 22 21 19 44 44 H 1.09001 * 110.61756 * 155.52574 * 22 21 19 45 45 H 1.08997 * 109.87913 * 267.09003 * 24 23 22 46 46 H 1.09001 * 109.87790 * 145.93089 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.0380 3.6017 1.2570 6 6 3.5650 1.4442 -0.1256 7 7 3.9491 0.8697 -1.4173 8 6 3.9073 1.6945 -2.6275 9 6 4.3184 3.1043 -2.2888 10 1 3.6018 3.9087 -2.3652 11 6 5.6106 3.3680 -1.8871 12 7 6.0374 4.6100 -1.8185 13 14 6.7554 1.9610 -1.4403 14 1 7.4431 1.4748 -2.6634 15 1 7.7649 2.4363 -0.4604 16 1 5.9679 0.8533 -0.8416 17 6 4.3409 -0.4176 -1.4925 18 8 4.3127 -1.1188 -0.5033 19 6 4.8140 -0.9858 -2.8057 20 1 4.1911 -0.6239 -3.6236 21 6 4.8081 -2.5333 -2.7601 22 6 6.1208 -2.8851 -3.5053 23 8 7.0351 -1.8503 -3.0837 24 6 6.2911 -0.6209 -3.0504 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6055 1.9815 -0.8418 31 1 0.5561 2.0489 1.4391 32 1 2.1393 1.6407 2.1428 33 1 1.4803 4.1039 0.4664 34 1 1.8145 4.0722 2.2145 35 1 3.1061 3.6801 1.0541 36 1 3.9965 0.8495 0.6794 37 1 3.9338 2.4678 -0.0592 38 1 2.8944 1.6981 -3.0300 39 1 4.5920 1.2850 -3.3702 40 1 6.9468 4.7956 -1.5362 41 1 4.8366 -2.8923 -1.7313 42 1 3.9423 -2.9346 -3.2869 43 1 5.9713 -2.8489 -4.5843 44 1 6.4843 -3.8663 -3.1999 45 1 6.3915 -0.1010 -4.0032 46 1 6.6557 0.0112 -2.2407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104547062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:13 Heat of formation + Delta-G solvation = -77.275276 kcal Electronic energy + Delta-G solvation = -24964.944142 eV Core-core repulsion = 21662.040457 eV Total energy + Delta-G solvation = -3302.903685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21954 -38.38595 -36.59709 -34.79018 -32.41863 -31.95954 -31.38598 -29.46699 -28.33604 -27.15996 -24.36168 -23.05221 -22.45154 -22.24432 -21.49457 -19.27849 -18.46711 -17.27726 -16.86597 -15.98485 -15.80436 -15.34388 -15.12079 -14.59224 -14.28640 -14.02376 -13.75789 -13.55671 -13.46917 -13.02115 -12.70916 -12.42054 -12.18441 -11.94567 -11.72335 -11.61191 -11.39204 -11.29605 -11.06633 -10.94437 -10.82314 -10.77153 -10.58268 -10.51576 -10.08121 -9.97108 -9.92647 -9.80891 -9.57810 -9.42989 -8.93477 -8.72550 -7.47019 -6.35778 -4.41194 3.08848 3.12459 3.31863 3.40757 3.85828 4.10322 4.22468 4.69975 4.88503 5.08562 5.20539 5.22867 5.28463 5.30351 5.37807 5.42351 5.54966 5.61336 5.74560 5.76804 5.78972 5.81042 5.90376 6.04656 6.08678 6.12311 6.16950 6.24721 6.29610 6.31504 6.42498 6.45562 6.48237 6.55305 6.66481 6.69130 6.76311 6.97284 6.98631 7.01425 7.21560 7.50691 8.16030 8.44520 8.70703 8.94951 9.26466 10.72374 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.008898 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.886241 B = 3146.087211 C = 4649.885076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.096 4.096 4 C -0.114 4.114 5 C -0.153 4.153 6 C 0.120 3.880 7 N -0.590 5.590 8 C 0.194 3.806 9 C -0.533 4.533 10 H 0.080 0.920 11 C 0.088 3.912 12 N -0.874 5.874 13 Si 0.850 3.150 14 H -0.268 1.268 15 H -0.292 1.292 16 H -0.231 1.231 17 C 0.515 3.485 18 O -0.561 6.561 19 C -0.147 4.147 20 H 0.104 0.896 21 C -0.141 4.141 22 C 0.046 3.954 23 O -0.376 6.376 24 C 0.043 3.957 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.268 0.732 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 -9.168 -0.319 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.115 4.115 4 C -0.152 4.152 5 C -0.211 4.211 6 C -0.002 4.002 7 N -0.322 5.322 8 C 0.075 3.925 9 C -0.571 4.571 10 H 0.098 0.902 11 C -0.119 4.119 12 N -0.509 5.509 13 Si 0.678 3.322 14 H -0.195 1.195 15 H -0.219 1.219 16 H -0.156 1.156 17 C 0.302 3.698 18 O -0.442 6.442 19 C -0.168 4.168 20 H 0.122 0.878 21 C -0.179 4.179 22 C -0.031 4.031 23 O -0.294 6.294 24 C -0.033 4.033 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.787 -9.372 0.261 11.018 hybrid contribution 0.511 -0.369 0.001 0.631 sum -5.275 -9.741 0.262 11.081 Atomic orbital electron populations 1.21833 0.96983 1.00587 1.01345 1.21485 0.94342 0.96882 1.02115 1.21477 0.96840 0.95381 0.97816 1.21525 1.00325 0.95939 0.97372 1.21822 1.02916 0.95743 1.00589 1.21363 0.93077 1.00904 0.84865 1.49286 1.62822 1.09439 1.10654 1.19895 0.97291 0.91436 0.83828 1.20995 0.97008 0.91519 1.47597 0.90210 1.25049 0.97732 0.95277 0.93795 1.69946 1.17711 1.18947 1.44336 0.87914 0.81126 0.83587 0.79558 1.19508 1.21916 1.15594 1.20020 0.77589 0.82702 0.89485 1.90571 1.56433 1.59535 1.37642 1.22734 0.98461 0.97241 0.98410 0.87818 1.23134 0.98069 0.93216 1.03514 1.23568 0.89087 0.92424 0.98020 1.88869 1.34321 1.17291 1.88968 1.23879 0.89159 0.87681 1.02616 0.93652 0.92903 0.93180 0.92325 0.92370 0.90912 0.92359 0.92578 0.92753 0.93741 0.91548 0.91791 0.88345 0.94559 0.94536 0.92181 0.88433 0.90229 0.92308 0.89029 0.91234 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.11 -1.78 4.67 -26.73 -0.12 -1.91 16 3 C -0.10 -1.61 2.04 -90.62 -0.18 -1.80 16 4 C -0.11 -1.69 5.27 -26.73 -0.14 -1.83 16 5 C -0.15 -2.36 9.76 37.16 0.36 -1.99 16 6 C 0.12 2.40 3.37 -4.05 -0.01 2.38 16 7 N -0.59 -11.99 0.94 -175.06 -0.16 -12.15 16 8 C 0.19 4.03 5.02 -5.19 -0.03 4.01 16 9 C -0.53 -13.18 8.23 -34.44 -0.28 -13.46 16 10 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 11 C 0.09 2.30 5.06 -17.82 -0.09 2.21 16 12 N -0.87 -24.51 13.96 55.43 0.77 -23.74 16 13 Si 0.85 20.11 21.89 -169.99 -3.72 16.39 16 14 H -0.27 -6.17 6.04 56.52 0.34 -5.83 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 16 H -0.23 -5.41 3.29 56.52 0.19 -5.23 16 17 C 0.51 10.38 3.56 -10.99 -0.04 10.34 16 18 O -0.56 -12.45 14.09 5.55 0.08 -12.38 16 19 C -0.15 -2.54 2.43 -90.24 -0.22 -2.76 16 20 H 0.10 1.59 7.03 -51.93 -0.36 1.22 16 21 C -0.14 -2.09 6.62 -24.72 -0.16 -2.25 16 22 C 0.05 0.63 7.72 38.21 0.29 0.92 16 23 O -0.38 -6.86 11.52 -35.23 -0.41 -7.26 16 24 C 0.04 0.81 5.08 37.74 0.19 1.00 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.65 6.46 -51.93 -0.34 0.31 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.04 6.30 -51.93 -0.33 0.72 16 29 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 0.78 6.35 -51.93 -0.33 0.45 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.16 6.31 -51.93 -0.33 0.84 16 36 H 0.06 1.34 7.22 -51.93 -0.38 0.97 16 37 H 0.10 2.14 4.25 -51.93 -0.22 1.92 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.73 5.10 -51.93 -0.26 0.47 16 40 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.10 1.63 6.79 -51.93 -0.35 1.27 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 46 H 0.09 1.95 2.17 -51.93 -0.11 1.84 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -28.51 329.35 -6.47 -34.98 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.92 Total: 5.97 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.08 Total: -6.78 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.61 Total: -35.89 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.33 Total: -19.64 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -3.72 Total: 16.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.51 -6.47 -34.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104547062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.292 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds