Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.46847 * 110.99989 * 45.79270 * 11 10 9 13 13 C 1.53038 * 109.52087 * 185.83951 * 12 11 10 14 14 C 1.53119 * 109.27902 * 300.81725 * 13 12 11 15 15 O 1.42901 * 109.52368 * 177.55959 * 14 13 12 16 16 C 1.42901 * 113.99426 * 90.31684 * 15 14 13 17 17 C 1.53002 * 109.46646 * 179.97438 * 16 15 14 18 18 H 1.08997 * 110.43745 * 305.70558 * 17 16 15 19 19 C 1.54809 * 110.48754 * 183.15620 * 17 16 15 20 20 C 1.55226 * 101.99071 * 220.52301 * 19 17 16 21 21 O 1.44379 * 103.56299 * 36.87752 * 20 19 17 22 22 C 1.43739 * 106.97890 * 320.01647 * 21 20 19 23 23 C 1.53116 * 109.15896 * 57.65620 * 14 13 12 24 24 C 1.46850 * 110.99890 * 170.00322 * 11 10 9 25 25 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 26 26 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 27 27 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 28 28 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 29 29 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 30 30 H 1.09002 * 109.46057 * 305.85433 * 12 11 10 31 31 H 1.08999 * 109.46188 * 65.82090 * 12 11 10 32 32 H 1.09001 * 109.49728 * 180.87973 * 13 12 11 33 33 H 1.08999 * 109.53716 * 60.78281 * 13 12 11 34 34 H 1.08997 * 109.52230 * 297.75556 * 14 13 12 35 35 H 1.08994 * 109.47601 * 300.00277 * 16 15 14 36 36 H 1.09001 * 109.46983 * 60.00311 * 16 15 14 37 37 H 1.09003 * 110.90802 * 338.64364 * 19 17 16 38 38 H 1.08999 * 110.90909 * 102.24311 * 19 17 16 39 39 H 1.09005 * 110.51493 * 278.38832 * 20 19 17 40 40 H 1.09001 * 110.64849 * 155.43599 * 20 19 17 41 41 H 1.09003 * 109.87904 * 267.08406 * 22 21 20 42 42 H 1.08997 * 109.88041 * 145.93709 * 22 21 20 43 43 H 1.08998 * 109.50835 * 182.40574 * 23 14 13 44 44 H 1.09003 * 109.50767 * 62.28711 * 23 14 13 45 45 H 1.09001 * 109.46123 * 294.17806 * 24 11 10 46 46 H 1.08996 * 109.46168 * 54.14297 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0215 -2.6366 -0.0171 11 7 5.4905 -2.6367 -0.0239 12 6 6.0213 -1.6826 0.9582 13 6 7.5435 -1.6028 0.8226 14 6 8.1453 -2.9914 1.0555 15 8 9.5616 -2.9347 0.8742 16 6 10.2890 -2.6408 2.0686 17 6 11.7868 -2.6060 1.7579 18 1 12.0972 -3.5332 1.2762 19 6 12.6031 -2.3675 3.0514 20 6 13.6989 -1.3819 2.5642 21 8 13.0025 -0.5419 1.6186 22 6 12.1245 -1.3955 0.8660 23 6 7.5399 -3.9762 0.0514 24 6 6.0178 -3.9873 0.2092 25 1 -0.4849 0.8401 0.0041 26 1 3.8711 -0.6782 -0.9024 27 1 3.8785 -0.6825 0.8776 28 1 3.6619 -3.1523 0.8734 29 1 3.6544 -3.1487 -0.9066 30 1 5.5886 -0.6983 0.7788 31 1 5.7631 -2.0149 1.9636 32 1 7.9387 -0.9063 1.5621 33 1 7.8028 -1.2570 -0.1780 34 1 7.9198 -3.3207 2.0698 35 1 9.9753 -1.6716 2.4560 36 1 10.0907 -3.4114 2.8136 37 1 11.9841 -1.9099 3.8232 38 1 13.0447 -3.2974 3.4097 39 1 14.5083 -1.9227 2.0737 40 1 14.0803 -0.7894 3.3958 41 1 12.6239 -1.7324 -0.0425 42 1 11.2119 -0.8566 0.6115 43 1 7.9325 -4.9755 0.2398 44 1 7.7985 -3.6682 -0.9617 45 1 5.7596 -4.3088 1.2182 46 1 5.5826 -4.6768 -0.5140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120060411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = -101.613726 kcal Electronic energy + Delta-G solvation = -22708.152702 eV Core-core repulsion = 19404.193623 eV Total energy + Delta-G solvation = -3303.959079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97190 -39.17337 -37.29248 -34.00767 -33.02463 -31.96082 -30.81025 -29.88683 -29.13508 -25.99728 -24.81638 -23.28528 -22.98472 -22.34454 -20.92278 -20.11237 -19.48110 -17.26034 -17.04747 -16.64142 -16.35805 -15.59160 -15.26931 -15.10534 -14.74062 -14.38993 -14.25450 -13.96374 -13.46208 -13.32230 -13.08089 -12.92495 -12.60436 -12.36245 -12.09971 -11.98018 -11.69693 -11.63864 -11.36674 -11.20470 -11.10553 -11.00736 -10.79822 -10.75497 -10.43031 -10.13935 -9.96417 -9.80856 -9.74601 -9.50304 -9.12428 -8.54350 -7.84647 -6.05832 -4.04085 3.31324 3.34744 3.38419 3.41224 3.61922 4.14965 4.31334 4.44333 4.47004 4.48047 4.76778 4.80955 4.86222 4.89122 5.01088 5.10407 5.17738 5.26899 5.28382 5.32156 5.33878 5.43973 5.48376 5.49568 5.53176 5.65364 5.68328 5.77018 5.83893 5.88616 6.00618 6.14984 6.16352 6.23810 6.35120 6.42869 6.54120 6.71847 7.10882 7.12545 7.31305 7.53816 7.61529 7.83398 8.51524 8.98254 9.56390 11.07541 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.003045 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.016919 B = 9192.816377 C =10024.655111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.015 4.015 10 C 0.070 3.930 11 N -0.542 5.542 12 C 0.052 3.948 13 C -0.137 4.137 14 C 0.092 3.908 15 O -0.382 6.382 16 C 0.070 3.930 17 C -0.120 4.120 18 H 0.091 0.909 19 C -0.150 4.150 20 C 0.046 3.954 21 O -0.380 6.380 22 C 0.054 3.946 23 C -0.110 4.110 24 C 0.058 3.942 25 H 0.263 0.737 26 H 0.021 0.979 27 H 0.018 0.982 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.029 0.971 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.207 -7.078 5.895 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.056 4.056 11 N -0.267 5.267 12 C -0.076 4.076 13 C -0.175 4.175 14 C 0.034 3.966 15 O -0.301 6.301 16 C -0.006 4.006 17 C -0.139 4.139 18 H 0.109 0.891 19 C -0.187 4.187 20 C -0.030 4.030 21 O -0.299 6.299 22 C -0.023 4.023 23 C -0.147 4.147 24 C -0.071 4.071 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.303 -6.620 5.219 27.621 hybrid contribution -0.170 0.382 1.106 1.182 sum 26.133 -6.238 6.325 27.601 Atomic orbital electron populations 1.69917 1.06305 1.26919 1.51066 1.25007 0.94731 0.99176 0.94490 0.86753 0.80227 0.83520 0.78622 1.20154 1.21440 1.19098 1.21071 0.89341 0.94538 1.51022 0.91070 1.19722 0.96878 0.91873 0.96739 1.22120 0.83290 1.00287 0.99903 1.62085 1.09683 1.05718 1.49243 1.22144 0.93371 0.98732 0.93371 1.22114 0.95646 0.96583 1.03161 1.22203 0.79760 0.95964 0.98629 1.87891 1.18163 1.91871 1.32183 1.22512 0.90607 0.99774 0.87744 1.22544 0.94466 1.00327 0.96576 0.89051 1.23197 0.97615 1.00557 0.97362 1.23576 0.94508 0.92504 0.92452 1.88895 1.57118 1.32255 1.51662 1.23226 0.94403 0.90691 0.93958 1.21632 0.94600 0.98169 1.00345 1.22015 0.93786 0.91640 0.99617 0.92708 0.96070 0.96385 0.95542 0.91184 0.89052 0.95335 0.91954 0.90227 0.92718 0.92913 0.93224 0.90152 0.89822 0.92138 0.88895 0.92134 0.89062 0.91447 0.90210 0.95319 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.35 3.29 -27.89 -0.09 -0.44 16 10 C 0.07 1.43 5.21 -3.82 -0.02 1.41 16 11 N -0.54 -9.35 4.81 -234.66 -1.13 -10.48 16 12 C 0.05 0.84 4.85 -3.83 -0.02 0.83 16 13 C -0.14 -1.85 5.72 -26.65 -0.15 -2.01 16 14 C 0.09 1.12 2.68 -26.61 -0.07 1.04 16 15 O -0.38 -4.45 9.82 -35.23 -0.35 -4.80 16 16 C 0.07 0.65 4.82 37.16 0.18 0.83 16 17 C -0.12 -0.97 3.32 -89.09 -0.30 -1.27 16 18 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 19 C -0.15 -0.95 6.73 -24.60 -0.17 -1.12 16 20 C 0.05 0.33 7.72 38.34 0.30 0.62 16 21 O -0.38 -4.05 11.52 -35.23 -0.41 -4.45 16 22 C 0.05 0.51 7.25 37.73 0.27 0.79 16 23 C -0.11 -1.34 5.75 -26.65 -0.15 -1.49 16 24 C 0.06 0.81 5.42 -3.83 -0.02 0.79 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 27 H 0.02 0.43 5.27 -51.93 -0.27 0.16 16 28 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.09 1.66 5.81 -51.93 -0.30 1.36 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.77 7.96 -51.93 -0.41 0.35 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 35 H 0.05 0.50 7.96 -51.93 -0.41 0.09 16 36 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 37 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.96 7.65 -51.93 -0.40 0.56 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -31.28 354.25 -9.61 -40.89 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -8.50 Total: -3.17 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.67 Total: -13.37 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.35 Total: -37.64 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.75 Total: -9.25 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.28 -9.61 -40.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120060411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.725 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds