Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48494 * 109.47137 * 239.99804 * 3 2 1 5 5 H 1.48502 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47352 * 119.99655 * 3 2 1 7 7 C 1.37878 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47571 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47725 * 179.97438 * 10 9 7 12 12 C 1.46848 * 111.00303 * 169.99859 * 11 10 9 13 13 C 1.53039 * 109.52504 * 185.84398 * 12 11 10 14 14 C 1.53119 * 109.27358 * 300.81944 * 13 12 11 15 15 O 1.42902 * 109.52133 * 177.55778 * 14 13 12 16 16 C 1.42902 * 114.00009 * 149.99865 * 15 14 13 17 17 C 1.52996 * 109.47066 * 180.02562 * 16 15 14 18 18 H 1.09006 * 110.98915 * 57.74807 * 17 16 15 19 19 C 1.55457 * 111.14633 * 181.92206 * 17 16 15 20 20 C 1.54382 * 102.18540 * 151.99467 * 19 17 16 21 21 O 1.43233 * 107.66464 * 338.74226 * 20 19 17 22 22 C 1.43650 * 109.97542 * 358.24175 * 21 20 19 23 23 C 1.53125 * 109.16309 * 57.65895 * 14 13 12 24 24 C 1.46846 * 111.00102 * 294.21493 * 11 10 9 25 25 H 0.96996 * 119.99768 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47408 * 59.99221 * 9 7 2 27 27 H 1.09003 * 109.47015 * 299.99612 * 9 7 2 28 28 H 1.09000 * 109.46913 * 59.99503 * 10 9 7 29 29 H 1.09003 * 109.47112 * 300.00138 * 10 9 7 30 30 H 1.09001 * 109.45920 * 65.82204 * 12 11 10 31 31 H 1.09003 * 109.46488 * 305.85984 * 12 11 10 32 32 H 1.08990 * 109.50211 * 180.88238 * 13 12 11 33 33 H 1.08998 * 109.50366 * 60.76159 * 13 12 11 34 34 H 1.08998 * 109.53014 * 297.68615 * 14 13 12 35 35 H 1.09007 * 109.46803 * 60.00768 * 16 15 14 36 36 H 1.08992 * 109.47064 * 300.00666 * 16 15 14 37 37 H 1.08994 * 110.83103 * 33.84532 * 19 17 16 38 38 H 1.08999 * 110.92148 * 270.18410 * 19 17 16 39 39 H 1.09002 * 109.83024 * 219.18066 * 20 19 17 40 40 H 1.08996 * 109.83002 * 98.29659 * 20 19 17 41 41 H 1.08996 * 110.30866 * 143.34644 * 22 21 20 42 42 H 1.09000 * 110.30998 * 265.51637 * 22 21 20 43 43 H 1.08998 * 109.50220 * 62.27736 * 23 14 13 44 44 H 1.08997 * 109.50764 * 182.40448 * 23 14 13 45 45 H 1.09003 * 109.45544 * 294.17253 * 24 11 10 46 46 H 1.08990 * 109.46374 * 54.13787 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4168 -6.0652 -0.2369 13 6 1.6019 -7.3532 -0.3745 14 6 0.7968 -7.5813 0.9078 15 8 -0.0096 -8.7522 0.7633 16 6 -0.2566 -9.4428 1.9898 17 6 -1.1242 -10.6730 1.7166 18 1 -0.6462 -11.3354 0.9949 19 6 -1.4574 -11.4280 3.0341 20 6 -2.8104 -12.0904 2.6968 21 8 -3.3910 -11.3630 1.6080 22 6 -2.5419 -10.2628 1.2447 23 6 -0.1032 -6.3681 1.1587 24 6 0.7612 -5.1086 1.2518 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6044 -0.8895 30 1 3.1073 -6.1599 0.6011 31 1 2.9804 -5.8923 -1.1538 32 1 2.2757 -8.1946 -0.5356 33 1 0.9210 -7.2644 -1.2209 34 1 1.4788 -7.7101 1.7482 35 1 -0.7743 -8.7792 2.6825 36 1 0.6911 -9.7568 2.4271 37 1 -1.5634 -10.7302 3.8646 38 1 -0.7005 -12.1813 3.2530 39 1 -3.4697 -12.0471 3.5638 40 1 -2.6514 -13.1284 2.4048 41 1 -2.5536 -10.1166 0.1646 42 1 -2.8619 -9.3537 1.7538 43 1 -0.8109 -6.2637 0.3363 44 1 -0.6475 -6.5057 2.0929 45 1 1.4595 -5.2079 2.0828 46 1 0.1223 -4.2410 1.4161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120060571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = -107.599314 kcal Electronic energy + Delta-G solvation = -22513.588262 eV Core-core repulsion = 19209.369628 eV Total energy + Delta-G solvation = -3304.218634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89839 -39.09817 -37.19522 -33.92337 -33.04939 -31.87937 -30.69447 -29.86321 -28.78682 -25.95937 -24.66722 -23.14844 -22.81093 -22.31500 -21.07755 -20.19411 -19.58244 -17.37050 -16.72024 -16.39776 -16.23846 -15.57205 -15.25785 -14.76879 -14.66178 -14.50491 -14.08968 -13.86915 -13.78298 -13.37975 -12.92066 -12.89379 -12.42214 -12.22794 -11.98568 -11.83270 -11.71812 -11.42370 -11.20386 -11.14039 -11.03428 -10.96009 -10.80964 -10.70600 -10.51394 -10.34231 -9.85874 -9.80069 -9.51402 -9.29828 -9.12059 -8.32664 -7.73515 -5.99456 -4.02043 3.30603 3.33156 3.37726 3.39844 3.67743 4.11709 4.34804 4.42490 4.52217 4.58060 4.79395 4.84856 4.89296 4.93786 5.03658 5.15149 5.22002 5.26074 5.35672 5.36232 5.39540 5.45039 5.52848 5.54698 5.60469 5.70715 5.73920 5.84321 5.89754 5.95157 6.07394 6.22206 6.25948 6.34038 6.50073 6.53082 6.70070 6.96089 7.15034 7.49678 7.57423 7.79484 7.89587 8.08452 8.43314 9.05016 9.61477 11.11854 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034769 B = 0.002594 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.122989 B =10792.048482 C =11267.270304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.063 3.937 11 N -0.539 5.539 12 C 0.058 3.942 13 C -0.110 4.110 14 C 0.092 3.908 15 O -0.380 6.380 16 C 0.073 3.927 17 C -0.121 4.121 18 H 0.094 0.906 19 C -0.150 4.150 20 C 0.052 3.948 21 O -0.387 6.387 22 C 0.061 3.939 23 C -0.136 4.136 24 C 0.057 3.943 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.024 0.976 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -23.387 5.994 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.264 5.264 12 C -0.071 4.071 13 C -0.148 4.148 14 C 0.035 3.965 15 O -0.300 6.300 16 C -0.003 4.003 17 C -0.140 4.140 18 H 0.113 0.887 19 C -0.188 4.188 20 C -0.025 4.025 21 O -0.307 6.307 22 C -0.016 4.016 23 C -0.174 4.174 24 C -0.071 4.071 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.479 -23.361 5.337 24.008 hybrid contribution 1.410 1.093 1.130 2.112 sum -0.068 -22.268 6.467 23.188 Atomic orbital electron populations 1.69962 1.06010 1.26699 1.50532 1.24995 0.94839 0.99168 0.95311 0.86655 0.79569 0.83162 0.78572 1.20226 1.21274 1.20328 1.21155 0.92932 0.91088 1.51024 0.92870 1.19098 0.93970 0.90072 0.97800 1.22325 0.96740 0.88296 0.98956 1.62027 1.27472 1.02464 1.34417 1.22023 0.93900 0.90575 1.00603 1.21636 0.98663 0.96877 0.97606 1.22216 0.91645 0.84466 0.98187 1.87905 1.71917 1.40086 1.30064 1.22353 0.98080 0.92442 0.87473 1.22872 0.96634 0.96720 0.97745 0.88744 1.23156 0.97786 1.00207 0.97652 1.23082 0.93317 0.95968 0.90112 1.88413 1.46934 1.43499 1.51835 1.23412 0.87357 0.89399 1.01384 1.22093 0.98929 0.94066 1.02287 1.22052 0.96764 0.98069 0.90186 0.92928 0.95664 0.96512 0.96289 0.91995 0.95659 0.90453 0.91550 0.90135 0.92824 0.93004 0.93110 0.90201 0.89702 0.91416 0.91295 0.89002 0.91875 0.90079 0.92047 0.95773 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.73 4.90 -27.89 -0.14 0.59 16 10 C 0.06 1.34 4.90 -3.83 -0.02 1.32 16 11 N -0.54 -9.76 4.66 -234.67 -1.09 -10.85 16 12 C 0.06 0.84 5.46 -3.83 -0.02 0.82 16 13 C -0.11 -1.41 5.75 -26.65 -0.15 -1.56 16 14 C 0.09 1.15 2.68 -26.61 -0.07 1.08 16 15 O -0.38 -4.54 9.85 -35.23 -0.35 -4.89 16 16 C 0.07 0.68 5.20 37.16 0.19 0.87 16 17 C -0.12 -1.02 3.38 -88.29 -0.30 -1.31 16 18 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.15 -0.98 6.52 -24.70 -0.16 -1.14 16 20 C 0.05 0.40 7.79 37.88 0.30 0.69 16 21 O -0.39 -4.26 11.36 -35.23 -0.40 -4.66 16 22 C 0.06 0.60 7.13 38.18 0.27 0.87 16 23 C -0.14 -1.89 5.72 -26.65 -0.15 -2.04 16 24 C 0.06 0.96 5.29 -3.83 -0.02 0.94 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.45 6.43 -51.93 -0.33 0.12 16 28 H 0.02 0.40 8.12 -51.93 -0.42 -0.03 16 29 H 0.06 1.28 7.99 -51.93 -0.41 0.87 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 1.09 8.02 -51.93 -0.42 0.67 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.63 7.79 -51.93 -0.40 0.22 16 35 H 0.05 0.46 7.92 -51.93 -0.41 0.05 16 36 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 37 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.63 8.00 -51.93 -0.42 0.21 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.06 0.76 7.96 -51.93 -0.41 0.35 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 1.73 6.21 -51.93 -0.32 1.41 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -30.82 359.45 -9.97 -40.79 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -8.58 Total: -3.84 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -0.68 Total: -12.44 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.36 Total: -37.02 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.75 Total: -9.55 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.82 -9.97 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120060571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.810 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds