Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48494 * 109.47137 * 239.99804 * 3 2 1 5 5 H 1.48502 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47352 * 119.99655 * 3 2 1 7 7 C 1.37878 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47571 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47725 * 179.97438 * 10 9 7 12 12 C 1.46848 * 111.00303 * 169.99859 * 11 10 9 13 13 C 1.53039 * 109.52504 * 185.84398 * 12 11 10 14 14 C 1.53119 * 109.27358 * 300.81944 * 13 12 11 15 15 O 1.42902 * 109.52133 * 177.55778 * 14 13 12 16 16 C 1.42902 * 114.00009 * 149.99865 * 15 14 13 17 17 C 1.52996 * 109.47066 * 180.02562 * 16 15 14 18 18 H 1.09006 * 110.98915 * 57.74807 * 17 16 15 19 19 C 1.55457 * 111.14633 * 181.92206 * 17 16 15 20 20 C 1.54382 * 102.18540 * 151.99467 * 19 17 16 21 21 O 1.43233 * 107.66464 * 338.74226 * 20 19 17 22 22 C 1.43650 * 109.97542 * 358.24175 * 21 20 19 23 23 C 1.53125 * 109.16309 * 57.65895 * 14 13 12 24 24 C 1.46846 * 111.00102 * 294.21493 * 11 10 9 25 25 H 0.96996 * 119.99768 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47408 * 59.99221 * 9 7 2 27 27 H 1.09003 * 109.47015 * 299.99612 * 9 7 2 28 28 H 1.09000 * 109.46913 * 59.99503 * 10 9 7 29 29 H 1.09003 * 109.47112 * 300.00138 * 10 9 7 30 30 H 1.09001 * 109.45920 * 65.82204 * 12 11 10 31 31 H 1.09003 * 109.46488 * 305.85984 * 12 11 10 32 32 H 1.08990 * 109.50211 * 180.88238 * 13 12 11 33 33 H 1.08998 * 109.50366 * 60.76159 * 13 12 11 34 34 H 1.08998 * 109.53014 * 297.68615 * 14 13 12 35 35 H 1.09007 * 109.46803 * 60.00768 * 16 15 14 36 36 H 1.08992 * 109.47064 * 300.00666 * 16 15 14 37 37 H 1.08994 * 110.83103 * 33.84532 * 19 17 16 38 38 H 1.08999 * 110.92148 * 270.18410 * 19 17 16 39 39 H 1.09002 * 109.83024 * 219.18066 * 20 19 17 40 40 H 1.08996 * 109.83002 * 98.29659 * 20 19 17 41 41 H 1.08996 * 110.30866 * 143.34644 * 22 21 20 42 42 H 1.09000 * 110.30998 * 265.51637 * 22 21 20 43 43 H 1.08998 * 109.50220 * 62.27736 * 23 14 13 44 44 H 1.08997 * 109.50764 * 182.40448 * 23 14 13 45 45 H 1.09003 * 109.45544 * 294.17253 * 24 11 10 46 46 H 1.08990 * 109.46374 * 54.13787 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4168 -6.0652 -0.2369 13 6 1.6019 -7.3532 -0.3745 14 6 0.7968 -7.5813 0.9078 15 8 -0.0096 -8.7522 0.7633 16 6 -0.2566 -9.4428 1.9898 17 6 -1.1242 -10.6730 1.7166 18 1 -0.6462 -11.3354 0.9949 19 6 -1.4574 -11.4280 3.0341 20 6 -2.8104 -12.0904 2.6968 21 8 -3.3910 -11.3630 1.6080 22 6 -2.5419 -10.2628 1.2447 23 6 -0.1032 -6.3681 1.1587 24 6 0.7612 -5.1086 1.2518 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6044 -0.8895 30 1 3.1073 -6.1599 0.6011 31 1 2.9804 -5.8923 -1.1538 32 1 2.2757 -8.1946 -0.5356 33 1 0.9210 -7.2644 -1.2209 34 1 1.4788 -7.7101 1.7482 35 1 -0.7743 -8.7792 2.6825 36 1 0.6911 -9.7568 2.4271 37 1 -1.5634 -10.7302 3.8646 38 1 -0.7005 -12.1813 3.2530 39 1 -3.4697 -12.0471 3.5638 40 1 -2.6514 -13.1284 2.4048 41 1 -2.5536 -10.1166 0.1646 42 1 -2.8619 -9.3537 1.7538 43 1 -0.8109 -6.2637 0.3363 44 1 -0.6475 -6.5057 2.0929 45 1 1.4595 -5.2079 2.0828 46 1 0.1223 -4.2410 1.4161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120060571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = -127.572095 kcal Electronic energy + Delta-G solvation = -22514.454347 eV Core-core repulsion = 19209.369628 eV Total energy + Delta-G solvation = -3305.084718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70970 -40.13225 -38.30832 -35.59313 -34.28987 -33.23029 -31.89270 -30.84262 -30.21950 -26.97312 -26.26086 -24.54344 -23.93353 -23.09872 -21.97019 -21.69926 -20.76348 -18.61570 -18.11432 -17.46460 -17.06140 -16.57299 -16.47370 -16.33416 -16.03327 -15.56561 -15.24808 -15.12352 -14.61713 -14.48104 -14.28024 -14.16985 -13.88470 -13.38094 -13.20931 -13.06681 -12.82596 -12.65938 -12.50148 -12.38436 -12.26506 -12.16492 -12.09230 -11.77891 -11.67580 -11.64939 -11.42547 -11.26562 -11.18290 -10.55096 -10.51404 -10.36725 -9.16992 -8.19726 -6.31306 1.40161 1.43537 1.51428 2.40306 2.50528 2.98531 3.06561 3.13476 3.49530 3.76626 3.79412 3.84503 3.94506 4.13055 4.18341 4.24239 4.26607 4.33812 4.36419 4.42968 4.52498 4.54949 4.57545 4.61673 4.69663 4.75673 4.82339 4.86432 4.89674 4.91251 4.99062 5.01968 5.05778 5.09622 5.19113 5.24389 5.31914 5.46598 5.67159 5.79044 6.02519 6.10762 6.28503 6.32843 6.34899 6.86077 7.37778 8.92231 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034769 B = 0.002594 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.122989 B =10792.048482 C =11267.270304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.080 3.920 11 N -0.556 5.556 12 C 0.058 3.942 13 C -0.104 4.104 14 C 0.099 3.901 15 O -0.392 6.392 16 C 0.069 3.931 17 C -0.116 4.116 18 H 0.094 0.906 19 C -0.141 4.141 20 C 0.042 3.958 21 O -0.414 6.414 22 C 0.056 3.944 23 C -0.128 4.128 24 C 0.060 3.940 25 H 0.264 0.736 26 H -0.011 1.011 27 H -0.006 1.006 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 -24.644 7.006 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.002 4.002 10 C -0.047 4.047 11 N -0.281 5.281 12 C -0.070 4.070 13 C -0.142 4.142 14 C 0.041 3.959 15 O -0.312 6.312 16 C -0.007 4.007 17 C -0.135 4.135 18 H 0.112 0.888 19 C -0.178 4.178 20 C -0.034 4.034 21 O -0.334 6.334 22 C -0.020 4.020 23 C -0.166 4.166 24 C -0.068 4.068 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.013 0.987 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.412 -24.648 6.354 25.458 hybrid contribution 0.745 1.415 0.821 1.798 sum 1.158 -23.233 7.175 24.343 Atomic orbital electron populations 1.70111 1.07870 1.27833 1.51414 1.25987 0.95754 1.03397 0.94655 0.85475 0.78229 0.77946 0.79228 1.19115 1.20911 1.19067 1.21610 0.93560 0.92259 1.50926 0.92053 1.18927 0.94244 0.92045 0.94955 1.21950 0.95314 0.88262 0.99195 1.61928 1.28306 1.02480 1.35368 1.22108 0.93774 0.89763 1.01349 1.21585 0.98688 0.96656 0.97303 1.22082 0.91380 0.83899 0.98516 1.87900 1.71888 1.39729 1.31674 1.22535 0.99143 0.92458 0.86566 1.22832 0.95249 0.96597 0.98825 0.88769 1.23151 0.97510 1.00511 0.96660 1.23315 0.94138 0.96307 0.89619 1.88381 1.47970 1.43956 1.53111 1.23410 0.88579 0.89234 1.00751 1.22015 0.98527 0.93722 1.02385 1.21984 0.96682 0.98110 0.90055 0.92777 0.99221 0.98747 0.95981 0.91632 0.94266 0.89929 0.88984 0.91680 0.91048 0.92725 0.91234 0.89473 0.87572 0.90531 0.90209 0.90157 0.92384 0.92061 0.90454 0.94671 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.36 9.11 25.60 0.23 -31.13 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.04 1.93 4.90 29.85 0.15 2.08 16 10 C 0.08 3.41 4.90 86.30 0.42 3.83 16 11 N -0.56 -20.18 4.66 -896.36 -4.17 -24.35 16 12 C 0.06 1.58 5.46 86.33 0.47 2.06 16 13 C -0.10 -2.47 5.75 30.65 0.18 -2.29 16 14 C 0.10 2.25 2.68 30.68 0.08 2.34 16 15 O -0.39 -8.62 9.85 -148.98 -1.47 -10.08 16 16 C 0.07 1.11 5.20 71.98 0.37 1.48 16 17 C -0.12 -1.74 3.38 -9.28 -0.03 -1.77 16 18 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 19 C -0.14 -1.47 6.52 31.91 0.21 -1.26 16 20 C 0.04 0.58 7.79 72.45 0.56 1.14 16 21 O -0.41 -8.93 11.36 -148.98 -1.69 -10.62 16 22 C 0.06 1.10 7.13 72.65 0.52 1.62 16 23 C -0.13 -3.52 5.72 30.65 0.18 -3.35 16 24 C 0.06 2.02 5.29 86.33 0.46 2.48 16 25 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 26 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 27 H -0.01 -0.33 6.43 -2.39 -0.02 -0.35 16 28 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 29 H 0.07 2.71 7.99 -2.39 -0.02 2.69 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 2.18 8.02 -2.39 -0.02 2.16 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 35 H 0.05 0.85 7.92 -2.38 -0.02 0.83 16 36 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 37 H 0.09 0.80 8.03 -2.39 -0.02 0.78 16 38 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 42 H 0.06 1.16 8.00 -2.39 -0.02 1.14 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.08 1.85 7.96 -2.39 -0.02 1.83 16 45 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.06 2.27 6.21 -2.39 -0.01 2.26 16 Total: -1.00 -67.84 359.45 0.15 -67.69 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.91 Total: 10.53 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 4.26 Total: -22.32 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -3.89 Total: -81.69 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -3.16 Total: -20.70 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -67.84 0.15 -67.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120060571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.880 kcal (2) G-P(sol) polarization free energy of solvation -67.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds