Wall clock time and date at job start Tue Mar 31 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47046 * 2 1 4 4 C 1.53003 * 109.47234 * 239.99777 * 2 1 3 5 5 C 1.52998 * 109.47160 * 119.99906 * 2 1 3 6 6 N 1.46901 * 109.47503 * 92.17138 * 5 2 1 7 7 C 1.46903 * 110.99832 * 72.67154 * 6 5 2 8 8 C 1.50698 * 109.47026 * 81.48096 * 7 6 5 9 9 H 1.08007 * 119.99899 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99957 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99858 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99920 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47068 * 60.00215 * 12 10 8 14 14 H 1.48503 * 109.47283 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47533 * 299.99795 * 12 10 8 16 16 C 1.46898 * 110.99875 * 308.72114 * 6 5 2 17 17 C 1.53002 * 109.47187 * 299.69225 * 16 6 5 18 18 C 1.52994 * 109.47484 * 177.60732 * 17 16 6 19 19 H 1.09000 * 110.32881 * 304.21599 * 18 17 16 20 20 C 1.54495 * 110.37024 * 181.85761 * 18 17 16 21 21 C 1.54576 * 102.14249 * 225.82084 * 20 18 17 22 22 O 1.45827 * 104.44726 * 26.84581 * 21 20 18 23 23 C 1.34072 * 109.90674 * 329.39967 * 22 21 20 24 24 O 1.20824 * 125.08924 * 200.79565 * 23 22 21 25 25 H 1.08997 * 109.47032 * 258.88162 * 1 2 3 26 26 H 1.08996 * 109.47037 * 18.88128 * 1 2 3 27 27 H 1.08996 * 109.46866 * 138.88182 * 1 2 3 28 28 H 1.09002 * 109.46937 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46766 * 299.99525 * 3 2 1 30 30 H 1.08993 * 109.47027 * 60.00036 * 3 2 1 31 31 H 1.09000 * 109.47163 * 273.77181 * 4 2 1 32 32 H 1.09001 * 109.46786 * 33.76978 * 4 2 1 33 33 H 1.08996 * 109.46983 * 153.76949 * 4 2 1 34 34 H 1.08997 * 109.47035 * 212.17407 * 5 2 1 35 35 H 1.09000 * 109.47492 * 332.16859 * 5 2 1 36 36 H 1.09004 * 109.47187 * 201.48078 * 7 6 5 37 37 H 1.08998 * 109.47273 * 321.48394 * 7 6 5 38 38 H 0.97001 * 119.99512 * 179.97438 * 11 10 8 39 39 H 1.08998 * 109.47385 * 59.69081 * 16 6 5 40 40 H 1.08991 * 109.47102 * 179.69390 * 16 6 5 41 41 H 1.08993 * 109.47033 * 297.61481 * 17 16 6 42 42 H 1.09012 * 109.46792 * 57.60778 * 17 16 6 43 43 H 1.08998 * 110.86349 * 343.97880 * 20 18 17 44 44 H 1.08996 * 110.86596 * 107.66138 * 20 18 17 45 45 H 1.09007 * 110.43873 * 268.10663 * 21 20 18 46 46 H 1.08994 * 110.54347 * 145.64170 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 2.2528 -2.1419 0.9420 7 6 3.4389 -2.3255 0.0951 8 6 4.6770 -2.3088 0.9541 9 1 4.5912 -2.1756 2.0225 10 6 5.9191 -2.4646 0.3763 11 7 6.0234 -2.6283 -0.9244 12 14 7.4538 -2.4432 1.4411 13 1 7.3808 -3.5426 2.4367 14 1 8.6529 -2.6289 0.5850 15 1 7.5478 -1.1406 2.1479 16 6 1.0615 -2.7288 0.3139 17 6 -0.1282 -2.6126 1.2689 18 6 -1.3820 -3.1697 0.5919 19 1 -1.5585 -2.6608 -0.3557 20 6 -2.6067 -3.0200 1.5216 21 6 -3.2714 -4.4111 1.4104 22 8 -2.1740 -5.3134 1.0816 23 6 -1.2432 -4.6603 0.3713 24 8 -0.4170 -5.1837 -0.3382 25 1 -0.3633 -0.1982 1.0084 26 1 -0.3633 0.9723 -0.3325 27 1 -0.3633 -0.7742 -0.6758 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 2.0975 -1.7919 -1.0527 32 1 1.3557 -0.5403 -2.0781 33 1 3.0303 -0.3456 -1.5069 34 1 2.9812 -0.2736 1.5684 35 1 1.3044 -0.6285 2.0482 36 1 3.3701 -3.2812 -0.4245 37 1 3.4925 -1.5180 -0.6351 38 1 6.8974 -2.7375 -1.3309 39 1 0.8386 -2.1962 -0.6106 40 1 1.2481 -3.7794 0.0921 41 1 0.0776 -3.1804 2.1763 42 1 -0.2881 -1.5650 1.5243 43 1 -2.2940 -2.8200 2.5465 44 1 -3.2761 -2.2398 1.1593 45 1 -4.0176 -4.4140 0.6157 46 1 -3.7262 -4.6947 2.3594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120553063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:12 Heat of formation + Delta-G solvation = -26.908731 kcal Electronic energy + Delta-G solvation = -24372.502200 eV Core-core repulsion = 21071.782573 eV Total energy + Delta-G solvation = -3300.719627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14663 -39.68058 -37.38916 -34.70568 -33.80340 -32.26044 -30.38265 -28.04090 -27.49695 -26.65810 -26.11358 -24.47024 -22.60517 -22.25686 -20.43879 -19.99592 -18.39915 -17.41230 -16.91071 -16.43256 -16.05707 -15.21861 -14.82535 -14.56357 -14.14093 -13.98501 -13.95937 -13.74310 -13.38616 -13.14565 -12.79859 -12.43854 -12.35552 -11.99996 -11.95939 -11.48241 -11.35767 -11.14002 -10.99661 -10.88473 -10.77959 -10.74726 -10.68043 -10.51575 -10.36129 -10.27240 -9.87188 -9.73049 -9.61331 -9.43910 -9.00072 -8.26944 -6.92137 -5.89312 -3.89050 2.14513 3.19048 3.39732 3.43731 3.46979 3.91364 4.12154 4.37658 4.52746 4.63450 4.92907 5.09263 5.13454 5.17880 5.25093 5.31931 5.38777 5.43887 5.48359 5.64293 5.67480 5.80519 5.85536 5.96414 5.99594 6.02737 6.12542 6.17230 6.29709 6.36162 6.44173 6.52479 6.63744 6.68708 6.74520 6.79630 6.89482 6.98199 7.37179 7.56528 7.58392 7.94672 8.26526 8.34902 8.69904 9.16882 9.72787 11.19891 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.005114 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.749861 B = 5473.728397 C = 6423.957695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.176 4.176 5 C 0.069 3.931 6 N -0.531 5.531 7 C 0.152 3.848 8 C -0.498 4.498 9 H 0.058 0.942 10 C 0.053 3.947 11 N -0.901 5.901 12 Si 0.894 3.106 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.279 1.279 16 C 0.024 3.976 17 C -0.113 4.113 18 C -0.150 4.150 19 H 0.112 0.888 20 C -0.153 4.153 21 C 0.054 3.946 22 O -0.352 6.352 23 C 0.482 3.518 24 O -0.440 6.440 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.023 0.977 37 H 0.045 0.955 38 H 0.259 0.741 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.963 4.533 3.421 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 C -0.192 4.192 4 C -0.232 4.232 5 C -0.060 4.060 6 N -0.253 5.253 7 C 0.029 3.971 8 C -0.537 4.537 9 H 0.077 0.923 10 C -0.147 4.147 11 N -0.542 5.542 12 Si 0.722 3.278 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.205 1.205 16 C -0.104 4.104 17 C -0.151 4.151 18 C -0.171 4.171 19 H 0.130 0.870 20 C -0.190 4.190 21 C -0.021 4.021 22 O -0.269 6.269 23 C 0.321 3.679 24 O -0.322 6.322 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.317 3.752 3.443 19.977 hybrid contribution 0.721 0.542 -0.247 0.935 sum -18.597 4.294 3.196 19.352 Atomic orbital electron populations 1.22461 0.95658 1.00786 1.01350 1.21183 0.94817 0.96064 0.98152 1.21911 1.01466 0.95440 1.00346 1.23250 1.00102 1.04372 0.95512 1.22357 1.00666 0.88819 0.94146 1.62304 1.03172 1.12801 1.47064 1.20684 0.85713 0.97902 0.92850 1.21209 0.90294 1.47990 0.94213 0.92340 1.24946 0.98907 0.95930 0.94919 1.69944 1.24017 1.50722 1.09499 0.86632 0.82468 0.78443 0.80246 1.20366 1.21522 1.20461 1.22769 0.90482 1.01285 0.95819 1.21900 0.91616 1.02388 0.99170 1.22603 0.98066 0.94515 1.01888 0.86990 1.23061 0.96780 0.97414 1.01769 1.24084 0.87559 0.87798 1.02647 1.87034 1.31919 1.41111 1.66832 1.23174 0.79370 0.89280 0.76038 1.90749 1.33925 1.75246 1.32287 0.92091 0.93617 0.92709 0.92289 0.93632 0.93326 0.87536 0.94906 0.91715 0.90466 0.92631 0.95857 0.93770 0.93099 0.92781 0.90452 0.91233 0.89007 0.88912 0.88661 0.89943 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 7.47 37.16 0.28 -1.54 16 2 C -0.10 -1.59 0.77 -154.50 -0.12 -1.70 16 3 C -0.13 -1.96 7.89 37.16 0.29 -1.67 16 4 C -0.18 -3.25 5.90 37.16 0.22 -3.03 16 5 C 0.07 1.26 4.84 -3.82 -0.02 1.24 16 6 N -0.53 -11.22 4.64 -236.08 -1.10 -12.32 16 7 C 0.15 3.93 3.42 -4.98 -0.02 3.91 16 8 C -0.50 -14.20 8.85 -34.44 -0.30 -14.50 16 9 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 10 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 12 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 C 0.02 0.44 3.58 -3.82 -0.01 0.42 16 17 C -0.11 -1.54 3.58 -26.73 -0.10 -1.64 16 18 C -0.15 -1.65 3.02 -90.68 -0.27 -1.93 16 19 H 0.11 1.12 7.60 -51.93 -0.39 0.73 16 20 C -0.15 -1.05 6.79 -25.12 -0.17 -1.22 16 21 C 0.05 0.38 7.90 37.99 0.30 0.68 16 22 O -0.35 -4.48 11.05 -38.50 -0.43 -4.91 16 23 C 0.48 7.06 7.75 36.31 0.28 7.34 16 24 O -0.44 -8.39 16.07 -18.41 -0.30 -8.69 16 25 H 0.06 0.68 4.87 -51.93 -0.25 0.43 16 26 H 0.04 0.51 7.69 -51.93 -0.40 0.11 16 27 H 0.05 0.67 5.59 -51.93 -0.29 0.38 16 28 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 29 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.11 2.20 2.27 -51.93 -0.12 2.08 16 32 H 0.03 0.53 7.79 -51.93 -0.40 0.13 16 33 H 0.06 1.34 6.76 -51.93 -0.35 0.99 16 34 H 0.08 1.58 7.29 -51.93 -0.38 1.20 16 35 H 0.06 0.88 6.21 -51.93 -0.32 0.56 16 36 H 0.02 0.67 7.73 -51.93 -0.40 0.27 16 37 H 0.05 1.15 3.58 -56.31 -0.20 0.95 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.05 0.95 3.24 -51.93 -0.17 0.78 16 40 H 0.08 1.64 6.07 -51.93 -0.32 1.32 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.11 3.37 -51.92 -0.17 0.93 16 43 H 0.09 0.60 7.81 -51.93 -0.41 0.20 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -32.88 334.05 -7.88 -40.77 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.08 Total: 1.53 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 0.26 Total: -12.20 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.36 Total: -38.71 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.72 Total: -13.60 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.88 -7.88 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120553063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.858 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds