Wall clock time and date at job start Tue Mar 31 2020 06:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46749 * 2 1 4 4 C 1.52998 * 109.47107 * 119.99807 * 2 1 3 5 5 C 1.53005 * 109.47113 * 64.99935 * 4 2 1 6 6 N 1.46900 * 109.47066 * 179.97438 * 5 4 2 7 7 C 1.46899 * 110.99934 * 293.95755 * 6 5 4 8 8 C 1.50702 * 109.47412 * 168.59742 * 7 6 5 9 9 H 1.07996 * 120.00454 * 119.99761 * 8 7 6 10 10 C 1.37875 * 119.99401 * 299.99857 * 8 7 6 11 11 N 1.31515 * 120.00409 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99667 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.46560 * 269.99533 * 12 10 8 14 14 H 1.48494 * 109.47046 * 29.99744 * 12 10 8 15 15 H 1.48500 * 109.47033 * 150.00198 * 12 10 8 16 16 C 1.46894 * 110.99811 * 169.99935 * 6 5 4 17 17 C 1.52998 * 109.47498 * 288.22247 * 16 6 5 18 18 C 1.52996 * 109.47260 * 185.80264 * 17 16 6 19 19 H 1.09006 * 110.33130 * 307.24236 * 18 17 16 20 20 C 1.54490 * 110.36972 * 185.00378 * 18 17 16 21 21 C 1.54576 * 102.14572 * 225.81872 * 20 18 17 22 22 O 1.45837 * 104.44413 * 26.84508 * 21 20 18 23 23 C 1.34066 * 109.90435 * 329.39812 * 22 21 20 24 24 O 1.20829 * 125.09402 * 200.85178 * 23 22 21 25 25 H 1.09002 * 109.47481 * 60.00409 * 1 2 3 26 26 H 1.09004 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47455 * 299.99848 * 1 2 3 28 28 H 1.09000 * 109.47048 * 239.99823 * 2 1 3 29 29 H 1.09002 * 109.46534 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47187 * 299.99657 * 3 2 1 31 31 H 1.08991 * 109.47309 * 60.00243 * 3 2 1 32 32 H 1.08998 * 109.46886 * 304.99905 * 4 2 1 33 33 H 1.09000 * 109.46990 * 185.00476 * 4 2 1 34 34 H 1.09004 * 109.46669 * 59.99923 * 5 4 2 35 35 H 1.08995 * 109.46956 * 300.00045 * 5 4 2 36 36 H 1.09000 * 109.47831 * 48.59238 * 7 6 5 37 37 H 1.09002 * 109.47145 * 288.59421 * 7 6 5 38 38 H 0.96995 * 120.00030 * 359.97438 * 11 10 8 39 39 H 1.09004 * 109.46812 * 48.22816 * 16 6 5 40 40 H 1.09006 * 109.46630 * 168.22100 * 16 6 5 41 41 H 1.08997 * 109.46831 * 305.80360 * 17 16 6 42 42 H 1.08997 * 109.46933 * 65.79949 * 17 16 6 43 43 H 1.09004 * 110.86328 * 343.97915 * 20 18 17 44 44 H 1.08999 * 110.87304 * 107.44716 * 20 18 17 45 45 H 1.08996 * 110.44390 * 145.58864 * 21 20 18 46 46 H 1.09002 * 110.43679 * 267.98635 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1254 -2.8880 2.3872 7 6 3.5937 -2.9292 2.4081 8 6 4.0642 -3.3876 3.7644 9 1 4.6589 -4.2845 3.8550 10 6 3.7353 -2.6619 4.8896 11 7 3.0115 -1.5694 4.7792 12 14 4.3191 -3.2296 6.5708 13 1 3.3068 -4.1393 7.1650 14 1 5.6098 -3.9501 6.4293 15 1 4.5045 -2.0507 7.4545 16 6 1.5593 -4.2401 2.4825 17 6 0.0770 -4.1478 2.8499 18 6 -0.4773 -5.5533 3.0908 19 1 -0.2567 -6.1984 2.2403 20 6 -2.0008 -5.4951 3.3404 21 6 -2.1645 -6.4177 4.5697 22 8 -0.8782 -6.3449 5.2531 23 6 0.1012 -6.1370 4.3614 24 8 1.2706 -6.3797 4.5448 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6054 -0.2616 2.1369 33 1 3.1263 -0.6442 1.2952 34 1 2.0699 -2.6549 0.3003 35 1 0.5489 -2.2723 1.1421 36 1 3.9882 -1.9339 2.2039 37 1 3.9485 -3.6238 1.6466 38 1 2.7093 -1.2740 3.9062 39 1 1.6651 -4.7468 1.5232 40 1 2.0897 -4.8027 3.2509 41 1 -0.0364 -3.5523 3.7557 42 1 -0.4708 -3.6761 2.0341 43 1 -2.3175 -4.4783 3.5731 44 1 -2.5500 -5.8842 2.4830 45 1 -2.9609 -6.0513 5.2174 46 1 -2.3722 -7.4400 4.2534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120730878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:17 Heat of formation + Delta-G solvation = -102.578413 kcal Electronic energy + Delta-G solvation = -23864.178778 eV Core-core repulsion = 20560.177867 eV Total energy + Delta-G solvation = -3304.000911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.82275 -37.69264 -37.11698 -35.61433 -34.09271 -32.16490 -30.21005 -28.50518 -27.07883 -26.86022 -25.13098 -22.66562 -22.37678 -22.35448 -20.27148 -19.71795 -19.39098 -17.24336 -16.76907 -16.56477 -15.74153 -15.04190 -14.71958 -14.40043 -14.02156 -13.83478 -13.60825 -13.58291 -13.31469 -13.08614 -12.73431 -12.42454 -12.36647 -12.19880 -11.96788 -11.77179 -11.51466 -11.23109 -11.15109 -10.90198 -10.63659 -10.60734 -10.51598 -10.45988 -10.21620 -10.07409 -10.04580 -9.91434 -9.59892 -9.32547 -8.41943 -8.12019 -7.05252 -6.01995 -3.81832 2.41441 3.40629 3.60231 3.65961 3.78064 4.12679 4.29444 4.54255 4.74984 4.80299 4.92226 5.17104 5.21179 5.23221 5.30261 5.34773 5.49864 5.58128 5.71398 5.77587 5.79893 5.82003 5.90510 5.94779 5.99320 6.05553 6.09799 6.13963 6.23029 6.31085 6.40351 6.41956 6.52069 6.71206 6.77484 6.90335 6.96295 7.04863 7.05307 7.33662 7.84475 8.11914 8.34220 8.64583 8.77635 9.23428 9.99650 11.38134 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010999 B = 0.006825 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.150854 B = 4101.309520 C = 6047.035427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.108 4.108 5 C 0.052 3.948 6 N -0.521 5.521 7 C 0.176 3.824 8 C -0.610 4.610 9 H 0.042 0.958 10 C 0.044 3.956 11 N -0.895 5.895 12 Si 1.056 2.944 13 H -0.287 1.287 14 H -0.291 1.291 15 H -0.287 1.287 16 C 0.059 3.941 17 C -0.095 4.095 18 C -0.150 4.150 19 H 0.109 0.891 20 C -0.153 4.153 21 C 0.054 3.946 22 O -0.351 6.351 23 C 0.481 3.519 24 O -0.430 6.430 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.009 0.991 35 H 0.057 0.943 36 H 0.027 0.973 37 H -0.018 1.018 38 H 0.289 0.711 39 H 0.007 0.993 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 -3.020 -7.903 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.077 4.077 6 N -0.246 5.246 7 C 0.053 3.947 8 C -0.648 4.648 9 H 0.061 0.939 10 C -0.166 4.166 11 N -0.530 5.530 12 Si 0.886 3.114 13 H -0.214 1.214 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.069 4.069 17 C -0.133 4.133 18 C -0.170 4.170 19 H 0.127 0.873 20 C -0.190 4.190 21 C -0.020 4.020 22 O -0.268 6.268 23 C 0.319 3.681 24 O -0.311 6.311 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.027 0.973 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.000 1.000 38 H 0.102 0.898 39 H 0.025 0.975 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.125 0.875 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.767 -2.507 -5.574 14.155 hybrid contribution 0.123 -0.910 -2.516 2.678 sum -12.644 -3.417 -8.090 15.395 Atomic orbital electron populations 1.21859 0.95751 1.01497 1.01058 1.21116 0.95553 0.96002 0.98848 1.21813 1.00962 0.96246 1.01162 1.21637 1.01209 0.94904 0.96854 1.22155 0.98826 0.94579 0.92107 1.62515 1.11382 1.15806 1.34904 1.19895 0.82897 0.95552 0.96398 1.21795 1.37268 1.13245 0.92529 0.93924 1.25451 0.94402 0.94286 1.02471 1.70537 1.31170 1.21443 1.29819 0.83762 0.76061 0.75584 0.76032 1.21404 1.21773 1.21302 1.21997 0.93374 0.91844 0.99691 1.21478 0.97426 0.91694 1.02700 1.22567 0.95214 1.01168 0.98065 0.87315 1.23052 0.95482 1.01950 0.98542 1.24035 0.83542 1.00488 0.93984 1.87049 1.18112 1.84688 1.36995 1.23079 0.85578 0.74919 0.84512 1.90777 1.14415 1.46698 1.79174 0.93575 0.92724 0.92660 0.92050 0.92849 0.93397 0.92623 0.91016 0.91903 0.97278 0.92420 0.95499 1.00012 0.89819 0.97503 0.87862 0.90361 0.91640 0.88994 0.88885 0.87504 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.95 37.16 0.33 -1.50 16 2 C -0.10 -1.38 2.92 -90.62 -0.26 -1.64 16 3 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 4 C -0.11 -1.98 4.22 -26.73 -0.11 -2.09 16 5 C 0.05 0.99 4.56 -3.82 -0.02 0.97 16 6 N -0.52 -12.16 3.02 -236.07 -0.71 -12.87 16 7 C 0.18 4.68 4.39 -4.98 -0.02 4.66 16 8 C -0.61 -18.12 8.13 -34.44 -0.28 -18.40 16 9 H 0.04 1.30 7.81 -52.49 -0.41 0.89 16 10 C 0.04 1.30 5.39 -17.82 -0.10 1.20 16 11 N -0.89 -27.33 13.50 55.43 0.75 -26.58 16 12 Si 1.06 27.27 29.90 -169.99 -5.08 22.19 16 13 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 C 0.06 1.28 4.76 -3.83 -0.02 1.26 16 17 C -0.09 -1.64 4.49 -26.73 -0.12 -1.76 16 18 C -0.15 -2.10 2.99 -90.68 -0.27 -2.37 16 19 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 20 C -0.15 -1.44 6.79 -25.12 -0.17 -1.61 16 21 C 0.05 0.52 7.90 37.99 0.30 0.82 16 22 O -0.35 -5.59 11.05 -38.48 -0.43 -6.01 16 23 C 0.48 8.71 7.77 36.31 0.28 9.00 16 24 O -0.43 -9.85 16.08 -18.41 -0.30 -10.15 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.69 6.57 -51.93 -0.34 0.35 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.45 7.88 -51.93 -0.41 1.04 16 33 H 0.06 1.27 6.34 -51.93 -0.33 0.95 16 34 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16 35 H 0.06 1.00 4.92 -51.93 -0.26 0.74 16 36 H 0.03 0.73 5.91 -51.93 -0.31 0.43 16 37 H -0.02 -0.48 8.11 -51.93 -0.42 -0.90 16 38 H 0.29 8.58 5.71 -40.82 -0.23 8.34 16 39 H 0.01 0.14 8.06 -51.93 -0.42 -0.28 16 40 H 0.10 2.64 4.87 -51.93 -0.25 2.39 16 41 H 0.08 1.56 8.13 -51.93 -0.42 1.13 16 42 H 0.07 0.97 6.81 -51.93 -0.35 0.62 16 43 H 0.09 0.86 7.81 -51.93 -0.41 0.45 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 355.81 15.07 5.36 5.36 Total: -1.00 -34.24 355.81 -8.53 -42.77 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.00 Total: -1.68 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.12 Total: -13.03 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.04 Total: -39.45 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.72 Total: -16.16 kcal Atomic # 14 Polarization: 27.27 SS G_CDS: -5.08 Total: 22.19 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.24 -8.53 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120730878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.807 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds