Wall clock time and date at job start Tue Mar 31 2020 06:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46721 * 2 1 4 4 C 1.52995 * 109.47286 * 119.99905 * 2 1 3 5 5 C 1.52998 * 109.46874 * 65.00544 * 4 2 1 6 6 N 1.46508 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46494 * 120.00175 * 93.88235 * 6 5 4 8 8 C 1.50693 * 109.47460 * 92.36758 * 7 6 5 9 9 H 1.08006 * 119.99835 * 0.27658 * 8 7 6 10 10 C 1.37879 * 120.00180 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99872 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00185 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.46960 * 89.99826 * 12 10 8 14 14 H 1.48498 * 109.47395 * 209.99817 * 12 10 8 15 15 H 1.48507 * 109.47000 * 330.00151 * 12 10 8 16 16 C 1.34772 * 119.99691 * 273.88589 * 6 5 4 17 17 O 1.21278 * 120.00459 * 5.04005 * 16 6 5 18 18 C 1.50706 * 119.99728 * 185.04634 * 16 6 5 19 19 H 1.08993 * 109.48163 * 40.65774 * 18 16 6 20 20 C 1.53094 * 109.47582 * 280.63343 * 18 16 6 21 21 C 1.53177 * 109.16243 * 182.40695 * 20 18 16 22 22 C 1.53183 * 109.03524 * 56.98410 * 21 20 18 23 23 C 1.53096 * 109.16294 * 303.02050 * 22 21 20 24 24 O 1.42901 * 109.41675 * 57.60757 * 23 22 21 25 25 H 1.09005 * 109.47028 * 299.99492 * 1 2 3 26 26 H 1.08993 * 109.47755 * 59.99843 * 1 2 3 27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47028 * 240.00508 * 2 1 3 29 29 H 1.09007 * 109.47139 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47755 * 300.00140 * 3 2 1 31 31 H 1.08998 * 109.47293 * 60.00516 * 3 2 1 32 32 H 1.08990 * 109.47759 * 305.00043 * 4 2 1 33 33 H 1.09006 * 109.47185 * 184.99514 * 4 2 1 34 34 H 1.08998 * 109.47908 * 59.99534 * 5 4 2 35 35 H 1.09004 * 109.47112 * 299.99480 * 5 4 2 36 36 H 1.09001 * 109.47012 * 332.36919 * 7 6 5 37 37 H 1.09001 * 109.47434 * 212.37629 * 7 6 5 38 38 H 0.97001 * 119.99819 * 180.02562 * 11 10 8 39 39 H 1.09002 * 109.52410 * 302.31850 * 20 18 16 40 40 H 1.09003 * 109.52174 * 62.50540 * 20 18 16 41 41 H 1.09003 * 109.54230 * 176.84717 * 21 20 18 42 42 H 1.08999 * 109.54794 * 297.03350 * 21 20 18 43 43 H 1.09003 * 109.52055 * 62.91934 * 22 21 20 44 44 H 1.08994 * 109.52396 * 183.11065 * 22 21 20 45 45 H 1.09000 * 109.48122 * 177.58945 * 23 22 21 46 46 H 1.08998 * 109.47997 * 297.61225 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6354 -2.1954 1.1878 6 7 2.1243 -2.8863 2.3837 7 6 1.2531 -3.0333 3.5523 8 6 0.5149 -4.3442 3.4669 9 1 0.6816 -5.0041 2.6283 10 6 -0.3688 -4.7039 4.4623 11 7 -1.0127 -5.8483 4.3879 12 14 -0.6514 -3.5661 5.9165 13 1 -1.7656 -2.6345 5.6068 14 1 -0.9980 -4.3713 7.1151 15 1 0.5849 -2.7877 6.1835 16 6 3.3755 -3.3864 2.4088 17 8 4.1275 -3.1860 1.4786 18 6 3.8402 -4.1950 3.5926 19 1 3.0377 -4.8568 3.9183 20 6 4.2207 -3.2521 4.7371 21 6 4.7484 -4.0777 5.9145 22 6 5.9339 -4.9238 5.4398 23 6 5.4873 -5.8021 4.2681 24 8 4.9790 -4.9739 3.2203 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 3.1264 -0.6443 1.2951 34 1 2.0699 -2.6550 0.3001 35 1 0.5490 -2.2724 1.1420 36 1 0.5356 -2.2131 3.5760 37 1 1.8564 -3.0144 4.4600 38 1 -1.6346 -6.1012 5.0880 39 1 4.9948 -2.5630 4.3993 40 1 3.3424 -2.6886 5.0521 41 1 5.0735 -3.4094 6.7118 42 1 3.9582 -4.7306 6.2853 43 1 6.7426 -4.2685 5.1162 44 1 6.2808 -5.5557 6.2572 45 1 6.3377 -6.3750 3.8984 46 1 4.7066 -6.4852 4.6028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122445549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:27 Heat of formation + Delta-G solvation = -107.248943 kcal Electronic energy + Delta-G solvation = -24033.946103 eV Core-core repulsion = 20729.742663 eV Total energy + Delta-G solvation = -3304.203440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87412 -38.16362 -36.46977 -34.89811 -33.32483 -32.55416 -31.30702 -29.29902 -27.54296 -27.02185 -25.36858 -23.71344 -22.93121 -22.34380 -20.07039 -19.79926 -18.60318 -17.06497 -16.63942 -16.15347 -15.51551 -15.07767 -14.86527 -14.61118 -14.35218 -14.01635 -13.92338 -13.62053 -13.45238 -12.93847 -12.55683 -12.48667 -12.42206 -12.36290 -12.09929 -11.87138 -11.66212 -11.26326 -11.16501 -10.98114 -10.87201 -10.84090 -10.77289 -10.62315 -10.49397 -10.33655 -10.16183 -10.07592 -9.64024 -9.13487 -8.88834 -8.74975 -7.74990 -6.26284 -4.28141 3.12491 3.19404 3.21408 3.23243 3.55335 4.21141 4.46188 4.90805 5.01089 5.03133 5.04106 5.05133 5.10305 5.12273 5.25891 5.39861 5.54147 5.61588 5.69440 5.72991 5.80236 5.85674 5.86752 5.95633 5.97470 5.98759 6.03766 6.07239 6.09302 6.17381 6.19939 6.22037 6.32261 6.36492 6.43939 6.50038 6.58785 6.62326 6.70972 7.28404 7.39374 7.56025 8.09550 8.37060 8.79508 8.94241 9.32673 10.86163 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010777 B = 0.007277 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.578610 B = 3846.568720 C = 5599.010683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.129 4.129 5 C 0.122 3.878 6 N -0.589 5.589 7 C 0.200 3.800 8 C -0.543 4.543 9 H 0.079 0.921 10 C 0.078 3.922 11 N -0.888 5.888 12 Si 0.868 3.132 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.529 3.471 17 O -0.550 6.550 18 C 0.073 3.927 19 H 0.105 0.895 20 C -0.146 4.146 21 C -0.121 4.121 22 C -0.155 4.155 23 C 0.060 3.940 24 O -0.361 6.361 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.032 0.968 37 H 0.038 0.962 38 H 0.267 0.733 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.173 8.089 0.581 10.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.168 4.168 5 C 0.000 4.000 6 N -0.321 5.321 7 C 0.079 3.921 8 C -0.582 4.582 9 H 0.098 0.902 10 C -0.126 4.126 11 N -0.525 5.525 12 Si 0.694 3.306 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.188 1.188 16 C 0.316 3.684 17 O -0.429 6.429 18 C 0.012 3.988 19 H 0.123 0.877 20 C -0.184 4.184 21 C -0.158 4.158 22 C -0.193 4.193 23 C -0.018 4.018 24 O -0.279 6.279 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.493 8.072 0.011 11.014 hybrid contribution -0.559 0.404 1.249 1.427 sum 6.934 8.476 1.259 11.023 Atomic orbital electron populations 1.21913 0.95262 1.02282 1.01291 1.21048 0.95829 0.95872 0.98549 1.21818 1.00857 0.96200 1.01292 1.22013 1.01409 0.95833 0.97510 1.21399 0.99678 0.90924 0.88047 1.47812 1.12677 1.54930 1.16656 1.19995 0.90181 0.98075 0.83815 1.21407 1.24263 1.02938 1.09548 0.90248 1.24878 0.95067 0.94935 0.97739 1.69896 1.27036 1.21440 1.34175 0.86974 0.79468 0.81302 0.82819 1.19825 1.20796 1.18790 1.19953 0.81711 0.79299 0.87439 1.90603 1.54294 1.59802 1.38169 1.22021 0.89869 0.93910 0.92999 0.87719 1.22177 1.02242 0.98608 0.95356 1.21579 0.98035 0.98857 0.97373 1.22193 0.98728 0.99558 0.98780 1.22584 0.98617 0.92308 0.88248 1.87971 1.46074 1.57831 1.36031 0.92755 0.93149 0.91992 0.91179 0.92870 0.93030 0.92902 0.92063 0.91688 0.91131 0.89941 0.95043 0.94430 0.92316 0.91197 0.89789 0.91516 0.91140 0.91271 0.91099 0.89003 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 37.16 0.33 -1.48 16 2 C -0.09 -1.21 2.92 -90.62 -0.26 -1.47 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 4 C -0.13 -2.00 4.99 -26.73 -0.13 -2.13 16 5 C 0.12 2.23 5.07 -4.04 -0.02 2.21 16 6 N -0.59 -12.24 2.47 -175.06 -0.43 -12.68 16 7 C 0.20 4.35 3.86 -5.20 -0.02 4.33 16 8 C -0.54 -14.04 9.00 -34.44 -0.31 -14.35 16 9 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 10 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.89 -25.32 13.96 55.43 0.77 -24.54 16 12 Si 0.87 19.27 27.47 -169.99 -4.67 14.60 16 13 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 16 C 0.53 11.54 6.90 -10.98 -0.08 11.46 16 17 O -0.55 -13.22 16.31 -13.56 -0.22 -13.44 16 18 C 0.07 1.44 2.24 -27.83 -0.06 1.38 16 19 H 0.11 2.25 6.71 -51.93 -0.35 1.90 16 20 C -0.15 -2.42 5.17 -26.59 -0.14 -2.56 16 21 C -0.12 -1.68 6.03 -26.55 -0.16 -1.84 16 22 C -0.15 -1.97 6.14 -26.59 -0.16 -2.14 16 23 C 0.06 0.88 6.84 37.21 0.25 1.14 16 24 O -0.36 -7.09 10.01 -54.35 -0.54 -7.64 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.79 6.56 -51.93 -0.34 0.45 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.34 7.62 -51.93 -0.40 0.94 16 35 H 0.08 1.47 6.47 -51.93 -0.34 1.14 16 36 H 0.03 0.66 7.48 -51.93 -0.39 0.27 16 37 H 0.04 0.79 3.68 -51.93 -0.19 0.60 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.40 5.79 -51.93 -0.30 1.10 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -30.14 356.54 -8.47 -38.61 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.23 Total: 4.47 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.52 Total: -4.76 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.34 Total: -37.22 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.77 Total: -21.08 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.67 Total: 14.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.14 -8.47 -38.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122445549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.637 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds