Wall clock time and date at job start Tue Mar 31 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47025 * 2 1 4 4 C 1.52992 * 109.47033 * 120.00358 * 2 1 3 5 5 C 1.53000 * 109.47344 * 65.00192 * 4 2 1 6 6 N 1.46506 * 109.47129 * 174.74385 * 5 4 2 7 7 C 1.46490 * 120.00036 * 94.71639 * 6 5 4 8 8 C 1.50697 * 109.47604 * 84.18487 * 7 6 5 9 9 H 1.08005 * 119.99528 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00606 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99817 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00175 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46889 * 60.00139 * 12 10 8 14 14 H 1.48498 * 109.47108 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47295 * 300.00279 * 12 10 8 16 16 C 1.34780 * 119.99562 * 274.71726 * 6 5 4 17 17 O 1.21280 * 120.00039 * 355.70747 * 16 6 5 18 18 C 1.50693 * 119.99720 * 175.71707 * 16 6 5 19 19 H 1.09005 * 109.48266 * 313.32363 * 18 16 6 20 20 C 1.53091 * 109.48498 * 73.34645 * 18 16 6 21 21 C 1.53172 * 109.16767 * 177.58717 * 20 18 16 22 22 C 1.53181 * 109.03818 * 303.02667 * 21 20 18 23 23 C 1.53086 * 109.16406 * 56.97397 * 22 21 20 24 24 O 1.42897 * 109.42506 * 302.39748 * 23 22 21 25 25 H 1.09002 * 109.47604 * 59.99052 * 1 2 3 26 26 H 1.08999 * 109.47272 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46817 * 299.99630 * 1 2 3 28 28 H 1.09003 * 109.46817 * 240.00370 * 2 1 3 29 29 H 1.08996 * 109.46960 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47136 * 300.00232 * 3 2 1 31 31 H 1.08997 * 109.46631 * 60.00274 * 3 2 1 32 32 H 1.09008 * 109.47104 * 185.00140 * 4 2 1 33 33 H 1.09002 * 109.47706 * 304.99531 * 4 2 1 34 34 H 1.09000 * 109.46649 * 294.73634 * 5 4 2 35 35 H 1.08992 * 109.47523 * 54.74069 * 5 4 2 36 36 H 1.09006 * 109.46970 * 204.17983 * 7 6 5 37 37 H 1.08998 * 109.47339 * 324.17590 * 7 6 5 38 38 H 0.96998 * 120.00432 * 180.02562 * 11 10 8 39 39 H 1.09003 * 109.52373 * 297.50246 * 20 18 16 40 40 H 1.09003 * 109.51852 * 57.68660 * 20 18 16 41 41 H 1.09007 * 109.54177 * 62.89083 * 21 20 18 42 42 H 1.09003 * 109.54909 * 183.15004 * 21 20 18 43 43 H 1.09005 * 109.52240 * 176.88714 * 22 21 20 44 44 H 1.09001 * 109.51700 * 297.06394 * 22 21 20 45 45 H 1.08999 * 109.48253 * 62.38014 * 23 22 21 46 46 H 1.09005 * 109.47651 * 182.39846 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.2292 -2.9125 2.3190 7 6 1.4578 -3.1073 3.5491 8 6 0.5791 -4.3230 3.4038 9 1 0.5936 -4.8932 2.4867 10 6 -0.2432 -4.7074 4.4417 11 7 -0.2603 -4.0134 5.5586 12 14 -1.3328 -6.2139 4.2612 13 1 -0.4875 -7.4091 4.0117 14 1 -2.1137 -6.4122 5.5086 15 1 -2.2628 -6.0184 3.1201 16 6 3.4852 -3.3926 2.2279 17 8 4.0956 -3.3001 1.1840 18 6 4.1310 -4.0447 3.4232 19 1 3.9717 -3.4250 4.3057 20 6 3.5093 -5.4252 3.6498 21 6 4.2120 -6.1059 4.8284 22 6 5.7136 -6.1854 4.5366 23 6 6.2502 -4.7755 4.2758 24 8 5.5334 -4.1879 3.1882 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1264 -0.6444 1.2951 33 1 1.6055 -0.2618 2.1370 34 1 0.5493 -2.2764 1.2361 35 1 1.9909 -2.6314 0.2543 36 1 2.1402 -3.2504 4.3870 37 1 0.8372 -2.2301 3.7316 38 1 -0.8385 -4.2840 6.2889 39 1 2.4481 -5.3146 3.8729 40 1 3.6325 -6.0319 2.7527 41 1 4.0472 -5.5251 5.7360 42 1 3.8123 -7.1114 4.9600 43 1 6.2289 -6.6185 5.3940 44 1 5.8813 -6.8075 3.6574 45 1 6.1188 -4.1655 5.1694 46 1 7.3097 -4.8304 4.0256 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122445765.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:30 Heat of formation + Delta-G solvation = -112.838083 kcal Electronic energy + Delta-G solvation = -24017.204454 eV Core-core repulsion = 20712.758650 eV Total energy + Delta-G solvation = -3304.445804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77698 -38.06599 -36.38942 -34.84676 -33.12839 -32.62595 -31.16237 -28.97917 -27.15719 -26.92753 -25.26008 -23.48901 -23.09695 -22.49929 -19.99108 -19.67890 -18.52344 -16.62707 -16.58835 -16.01415 -15.38462 -14.98160 -14.85817 -14.55680 -14.25540 -13.98339 -13.83440 -13.62812 -13.13758 -12.82923 -12.50871 -12.44885 -12.24510 -12.04856 -11.94210 -11.62011 -11.50820 -11.18832 -11.02781 -10.90367 -10.86079 -10.66846 -10.63293 -10.58591 -10.43710 -10.22131 -10.05806 -9.92107 -9.76918 -9.06169 -8.83309 -8.56840 -7.70463 -6.25641 -4.32162 3.19556 3.25136 3.27179 3.39029 3.56439 4.25552 4.54708 5.05600 5.09138 5.10981 5.15463 5.17736 5.20399 5.24557 5.46282 5.50040 5.56354 5.70001 5.75571 5.76547 5.88323 5.92870 5.95393 6.02438 6.04903 6.08549 6.14986 6.22769 6.27508 6.28400 6.38365 6.42907 6.44298 6.65310 6.69029 6.71618 6.77152 7.01351 7.12897 7.46080 7.64296 7.70320 7.98155 8.33175 8.73236 9.03861 9.34102 10.80119 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.007292 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.352959 B = 3838.720831 C = 6034.756798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.128 4.128 5 C 0.123 3.877 6 N -0.594 5.594 7 C 0.233 3.767 8 C -0.537 4.537 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.887 5.887 12 Si 0.893 3.107 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.524 3.476 17 O -0.555 6.555 18 C 0.083 3.917 19 H 0.078 0.922 20 C -0.164 4.164 21 C -0.117 4.117 22 C -0.157 4.157 23 C 0.062 3.938 24 O -0.365 6.365 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.267 0.733 39 H 0.132 0.868 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 2.829 -2.378 6.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.166 4.166 5 C 0.000 4.000 6 N -0.325 5.325 7 C 0.113 3.887 8 C -0.576 4.576 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.720 3.280 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.311 3.689 17 O -0.434 6.434 18 C 0.023 3.977 19 H 0.096 0.904 20 C -0.201 4.201 21 C -0.154 4.154 22 C -0.195 4.195 23 C -0.015 4.015 24 O -0.283 6.283 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.466 2.951 -2.890 6.851 hybrid contribution -0.828 -0.977 0.447 1.357 sum 4.637 1.974 -2.443 5.601 Atomic orbital electron populations 1.21897 0.95285 1.02180 1.01254 1.21049 0.95807 0.95852 0.98529 1.21820 1.00852 0.96237 1.01278 1.21999 1.01150 0.95958 0.97539 1.21325 0.98477 0.90453 0.89736 1.48122 1.13178 1.53766 1.17477 1.19526 0.91198 0.97359 0.80573 1.21415 1.23501 1.11475 1.01176 0.91863 1.24932 0.96575 0.97043 0.95021 1.69906 1.38761 1.39152 1.04593 0.86623 0.80699 0.83058 0.77593 1.19922 1.21101 1.20044 1.19990 0.81920 0.78249 0.88772 1.90598 1.63779 1.58505 1.30528 1.21859 0.81839 0.97543 0.96469 0.90442 1.22527 1.05132 0.93996 0.98445 1.21540 0.94026 1.01171 0.98695 1.22226 0.97387 0.98027 1.01868 1.22539 0.95927 0.92875 0.90131 1.87969 1.18425 1.81835 1.40088 0.93272 0.92118 0.92667 0.91296 0.92893 0.93095 0.92833 0.92009 0.91878 0.90009 0.91382 0.94230 0.94667 0.92346 0.84978 0.91906 0.91702 0.91583 0.91461 0.91336 0.93464 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.95 37.16 0.33 -1.54 16 2 C -0.09 -1.26 2.92 -90.62 -0.26 -1.52 16 3 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 4 C -0.13 -2.08 4.98 -26.74 -0.13 -2.22 16 5 C 0.12 2.31 5.04 -4.04 -0.02 2.29 16 6 N -0.59 -12.60 2.47 -175.07 -0.43 -13.03 16 7 C 0.23 5.33 4.65 -5.20 -0.02 5.31 16 8 C -0.54 -13.20 6.88 -34.44 -0.24 -13.44 16 9 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -23.21 13.29 55.43 0.74 -22.47 16 12 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 13 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 C 0.52 11.62 6.98 -10.99 -0.08 11.54 16 17 O -0.56 -13.63 16.18 -13.99 -0.23 -13.86 16 18 C 0.08 1.67 2.22 -27.84 -0.06 1.61 16 19 H 0.08 1.51 6.85 -51.93 -0.36 1.16 16 20 C -0.16 -3.16 5.15 -26.60 -0.14 -3.30 16 21 C -0.12 -1.87 6.03 -26.55 -0.16 -2.03 16 22 C -0.16 -2.18 6.14 -26.59 -0.16 -2.34 16 23 C 0.06 0.92 6.84 37.20 0.25 1.17 16 24 O -0.36 -7.12 9.97 -54.78 -0.55 -7.67 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.80 6.68 -51.93 -0.35 0.45 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.51 6.72 -51.93 -0.35 1.16 16 35 H 0.07 1.31 7.51 -51.93 -0.39 0.92 16 36 H 0.04 0.93 5.56 -51.93 -0.29 0.64 16 37 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.13 2.88 4.27 -51.93 -0.22 2.66 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -28.07 358.16 -8.80 -36.87 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.26 Total: 4.25 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -0.45 Total: -4.22 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.30 Total: -35.50 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.77 Total: -21.53 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.07 -8.80 -36.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122445765.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.969 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds