Wall clock time and date at job start Tue Mar 31 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46830 * 2 1 4 4 C 1.52999 * 109.47160 * 239.99613 * 2 1 3 5 5 C 1.53004 * 109.46909 * 119.99428 * 2 1 3 6 6 N 1.46503 * 109.46698 * 57.80369 * 5 2 1 7 7 C 1.46507 * 119.99744 * 275.43132 * 6 5 2 8 8 C 1.50705 * 109.47126 * 270.00567 * 7 6 5 9 9 H 1.07996 * 119.99909 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99780 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00008 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99738 * 179.97438 * 10 8 7 13 13 H 1.48488 * 109.47351 * 89.99935 * 12 10 8 14 14 H 1.48506 * 109.46766 * 210.00129 * 12 10 8 15 15 H 1.48504 * 109.47016 * 329.99580 * 12 10 8 16 16 C 1.34770 * 120.00240 * 95.43978 * 6 5 2 17 17 O 1.21280 * 120.00328 * 177.04966 * 16 6 5 18 18 C 1.50707 * 119.99881 * 356.76960 * 16 6 5 19 19 C 1.52995 * 109.46889 * 174.70291 * 18 16 6 20 20 H 1.09000 * 109.82912 * 305.70173 * 19 18 16 21 21 C 1.54389 * 109.82866 * 184.81213 * 19 18 16 22 22 C 1.55446 * 102.18627 * 219.18416 * 21 19 18 23 23 C 1.54947 * 100.99046 * 34.03668 * 22 21 19 24 24 O 1.43238 * 109.83439 * 66.58736 * 19 18 16 25 25 H 1.08997 * 109.47208 * 300.00122 * 1 2 3 26 26 H 1.09006 * 109.46952 * 60.00517 * 1 2 3 27 27 H 1.09005 * 109.46911 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46869 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46386 * 299.99314 * 3 2 1 30 30 H 1.08991 * 109.47245 * 59.99522 * 3 2 1 31 31 H 1.08998 * 109.47249 * 294.96847 * 4 2 1 32 32 H 1.09001 * 109.47171 * 54.97341 * 4 2 1 33 33 H 1.09002 * 109.46559 * 174.96765 * 4 2 1 34 34 H 1.08998 * 109.47391 * 297.80289 * 5 2 1 35 35 H 1.08995 * 109.46919 * 177.80204 * 5 2 1 36 36 H 1.08999 * 109.47060 * 30.00415 * 7 6 5 37 37 H 1.08996 * 109.46908 * 150.00604 * 7 6 5 38 38 H 0.97003 * 119.99701 * 180.02562 * 11 10 8 39 39 H 1.09005 * 109.46914 * 294.70129 * 18 16 6 40 40 H 1.08993 * 109.46741 * 54.70018 * 18 16 6 41 41 H 1.09000 * 110.84569 * 337.32278 * 21 19 18 42 42 H 1.08999 * 110.84231 * 100.93842 * 21 19 18 43 43 H 1.09005 * 111.06040 * 276.12105 * 22 21 19 44 44 H 1.08998 * 111.18453 * 152.00992 * 22 21 19 45 45 H 1.09003 * 110.31244 * 204.68921 * 23 22 21 46 46 H 1.09006 * 110.39001 * 82.56633 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2494 6 7 1.5088 -2.0862 1.2761 7 6 0.1777 -2.3435 1.8313 8 6 0.2952 -2.6297 3.3062 9 1 1.2645 -2.6213 3.7823 10 6 -0.8347 -2.9033 4.0475 11 7 -2.0150 -2.9141 3.4676 12 14 -0.6889 -3.2588 5.8756 13 1 -0.7988 -1.9888 6.6371 14 1 -1.7780 -4.1798 6.2891 15 1 0.6259 -3.8906 6.1537 16 6 2.2448 -3.1054 0.7903 17 8 1.8279 -4.2421 0.8610 18 6 3.5830 -2.8318 0.1534 19 6 4.2643 -4.1577 -0.1911 20 1 4.3192 -4.7869 0.6972 21 6 5.6853 -3.8910 -0.7327 22 6 5.8041 -4.9406 -1.8731 23 6 4.3440 -4.9817 -2.3900 24 8 3.5269 -4.8306 -1.2183 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.7522 -1.7717 -1.2052 32 1 1.6051 -0.2622 -2.1369 33 1 3.1263 -0.6439 -1.2953 34 1 1.7092 -0.1850 2.1388 35 1 3.1292 -0.7554 1.2299 36 1 -0.4543 -1.4683 1.6803 37 1 -0.2657 -3.2030 1.3286 38 1 -2.8100 -3.1062 3.9892 39 1 3.4399 -2.2495 -0.7570 40 1 4.2084 -2.2717 0.8484 41 1 5.7662 -2.8784 -1.1277 42 1 6.4342 -4.0684 0.0393 43 1 6.1099 -5.9110 -1.4821 44 1 6.4871 -4.6007 -2.6517 45 1 4.1402 -5.9376 -2.8726 46 1 4.1640 -4.1617 -3.0852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170898775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:52 Heat of formation + Delta-G solvation = -90.813529 kcal Electronic energy + Delta-G solvation = -24273.721598 eV Core-core repulsion = 20970.230851 eV Total energy + Delta-G solvation = -3303.490747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88982 -38.76253 -36.81238 -33.76580 -32.42019 -32.10841 -31.44423 -28.25537 -27.25421 -26.75632 -26.13066 -25.21890 -22.76534 -21.76193 -20.88324 -19.19399 -17.75565 -16.89657 -16.47816 -16.29177 -15.62851 -15.29455 -15.03621 -14.37137 -14.19915 -13.81179 -13.63269 -13.58822 -13.06037 -12.88173 -12.55252 -12.42469 -12.02554 -11.91084 -11.70638 -11.53683 -11.33811 -11.29485 -11.19630 -11.04534 -10.98656 -10.84302 -10.79758 -10.65333 -10.54144 -10.30505 -10.09828 -10.02469 -9.45925 -9.26367 -8.65312 -8.33834 -7.46425 -5.96157 -3.99693 3.34037 3.40824 3.45151 3.62762 3.93679 4.12975 4.46850 4.51232 4.76339 4.89132 5.06340 5.07852 5.12093 5.19753 5.26660 5.36757 5.41255 5.56019 5.62035 5.63829 5.66167 5.70445 5.74824 5.79531 5.83071 5.90579 5.94686 5.97537 6.05831 6.16551 6.23930 6.28772 6.34424 6.36578 6.47520 6.64256 6.82784 7.22104 7.31602 7.56404 7.70263 8.01532 8.35162 8.59646 9.00926 9.30261 9.64960 11.11582 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.005807 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.823733 B = 4820.893333 C = 6086.197343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.146 4.146 5 C 0.122 3.878 6 N -0.597 5.597 7 C 0.240 3.760 8 C -0.522 4.522 9 H 0.055 0.945 10 C 0.060 3.940 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.507 3.493 17 O -0.528 6.528 18 C -0.171 4.171 19 C 0.098 3.902 20 H 0.084 0.916 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.044 3.956 24 O -0.355 6.355 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.262 0.738 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.742 5.644 -11.224 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.203 4.203 5 C -0.003 4.003 6 N -0.329 5.329 7 C 0.121 3.879 8 C -0.561 4.561 9 H 0.073 0.927 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.293 3.707 17 O -0.404 6.404 18 C -0.211 4.211 19 C 0.040 3.960 20 H 0.102 0.898 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.033 4.033 24 O -0.273 6.273 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.080 4.920 -11.107 18.596 hybrid contribution 0.247 0.052 1.068 1.098 sum 14.327 4.972 -10.038 18.186 Atomic orbital electron populations 1.22044 0.93888 1.03342 1.00813 1.21002 0.96948 0.94951 0.95909 1.21806 1.00389 0.95540 1.01722 1.22123 0.99767 1.01323 0.97040 1.21498 0.97456 0.84094 0.97250 1.48167 1.19718 1.05380 1.59631 1.19445 0.77459 0.97811 0.93216 1.21476 0.93197 1.47623 0.93764 0.92697 1.24914 0.95224 0.95426 0.98565 1.69934 0.97949 1.49654 1.35986 0.86544 0.77775 0.78045 0.85323 1.20765 1.21173 1.20003 1.20144 0.86128 0.85395 0.79039 1.90697 1.71662 1.21231 1.56815 1.22614 0.96631 0.98933 1.02905 1.22464 0.88691 0.92742 0.92116 0.89848 1.23239 0.97289 0.99867 0.98572 1.23276 0.97776 0.99941 0.98351 1.23373 0.89215 1.01171 0.89513 1.88687 1.37729 1.78403 1.22515 0.92379 0.93817 0.90860 0.93004 0.92857 0.92492 0.91749 0.93070 0.92924 0.90341 0.91755 0.93820 0.94303 0.92870 0.87683 0.89144 0.90491 0.90061 0.90481 0.90295 0.90140 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 7.06 37.16 0.26 -2.06 16 2 C -0.09 -1.22 0.85 -154.50 -0.13 -1.35 16 3 C -0.14 -1.53 8.47 37.16 0.31 -1.21 16 4 C -0.15 -1.92 6.74 37.16 0.25 -1.67 16 5 C 0.12 2.00 4.57 -4.04 -0.02 1.98 16 6 N -0.60 -12.70 1.98 -175.05 -0.35 -13.04 16 7 C 0.24 6.30 3.97 -5.19 -0.02 6.28 16 8 C -0.52 -15.03 9.39 -34.44 -0.32 -15.35 16 9 H 0.05 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 12 Si 0.90 22.30 29.54 -169.99 -5.02 17.27 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 C 0.51 10.86 6.34 -10.98 -0.07 10.79 16 17 O -0.53 -14.01 15.04 -9.25 -0.14 -14.15 16 18 C -0.17 -2.62 3.71 -27.88 -0.10 -2.73 16 19 C 0.10 1.47 3.05 -26.01 -0.08 1.39 16 20 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 21 C -0.15 -1.56 6.56 -24.70 -0.16 -1.72 16 22 C -0.16 -1.47 7.16 -24.40 -0.17 -1.64 16 23 C 0.04 0.53 7.78 38.18 0.30 0.82 16 24 O -0.35 -6.08 10.24 -50.03 -0.51 -6.60 16 25 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.42 5.66 -51.93 -0.29 1.12 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.03 5.63 -51.93 -0.29 0.74 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.58 6.88 -51.93 -0.36 0.23 16 34 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 35 H 0.06 0.89 6.11 -51.93 -0.32 0.57 16 36 H 0.04 1.14 5.38 -51.93 -0.28 0.86 16 37 H 0.04 1.18 7.46 -51.93 -0.39 0.79 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.11 1.44 4.04 -51.93 -0.21 1.23 16 40 H 0.09 1.18 7.01 -51.93 -0.36 0.81 16 41 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -34.26 350.15 -7.99 -42.25 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.93 Total: 0.07 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.05 Total: -4.82 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.39 Total: -39.31 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.65 Total: -20.74 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.26 -7.99 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170898775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.559 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds