Wall clock time and date at job start Tue Mar 31 2020 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00474 * 2 1 4 4 O 1.20829 * 119.99783 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00446 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47065 * 158.42132 * 5 3 2 7 7 H 1.09001 * 110.06579 * 50.06948 * 6 5 3 8 8 C 1.53999 * 109.91196 * 171.27185 * 6 5 3 9 9 C 1.54596 * 105.13684 * 120.57822 * 8 6 5 10 10 C 1.54937 * 102.92422 * 21.95660 * 9 8 6 11 11 N 1.47893 * 109.91873 * 288.86001 * 6 5 3 12 12 C 1.46904 * 111.00110 * 94.80688 * 11 6 5 13 13 C 1.52995 * 109.47389 * 176.64942 * 12 11 6 14 14 C 1.53004 * 109.46915 * 283.73556 * 13 12 11 15 15 C 1.53005 * 109.47466 * 43.73278 * 13 12 11 16 16 C 1.52998 * 109.47488 * 163.73277 * 13 12 11 17 17 C 1.50703 * 109.47461 * 179.97438 * 16 13 12 18 18 H 1.08003 * 119.99538 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99889 * 180.02562 * 17 16 13 20 20 N 1.31510 * 120.00319 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99619 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47343 * 89.99779 * 21 19 17 23 23 H 1.48499 * 109.47062 * 209.99458 * 21 19 17 24 24 H 1.48504 * 109.47358 * 329.99727 * 21 19 17 25 25 H 1.09000 * 109.47093 * 59.99989 * 1 2 3 26 26 H 1.09001 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46517 * 300.00039 * 1 2 3 28 28 H 1.09001 * 109.46684 * 38.42210 * 5 3 2 29 29 H 1.09001 * 109.46807 * 278.42579 * 5 3 2 30 30 H 1.09002 * 110.30609 * 239.49201 * 8 6 5 31 31 H 1.08996 * 110.30874 * 1.56013 * 8 6 5 32 32 H 1.09003 * 110.72004 * 140.31036 * 9 8 6 33 33 H 1.08997 * 110.72644 * 263.59371 * 9 8 6 34 34 H 1.09007 * 110.66821 * 81.01980 * 10 9 8 35 35 H 1.08998 * 110.66913 * 203.98158 * 10 9 8 36 36 H 1.09002 * 109.47001 * 296.64535 * 12 11 6 37 37 H 1.08995 * 109.47063 * 56.64305 * 12 11 6 38 38 H 1.08998 * 109.47138 * 80.63765 * 14 13 12 39 39 H 1.08999 * 109.47012 * 200.63655 * 14 13 12 40 40 H 1.08997 * 109.47239 * 320.63204 * 14 13 12 41 41 H 1.08998 * 109.46817 * 59.99593 * 15 13 12 42 42 H 1.09000 * 109.47442 * 180.02562 * 15 13 12 43 43 H 1.09003 * 109.47129 * 300.00552 * 15 13 12 44 44 H 1.08999 * 109.47487 * 300.00223 * 16 13 12 45 45 H 1.09006 * 109.46716 * 59.99878 * 16 13 12 46 46 H 0.96996 * 120.00069 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5665 1.2748 -0.0006 6 6 4.0053 2.6411 -0.5310 7 1 3.4684 3.4343 -0.0108 8 6 5.5224 2.8177 -0.3337 9 6 6.0915 3.0367 -1.7543 10 6 4.8569 3.5301 -2.5499 11 7 3.7442 2.7250 -1.9843 12 6 2.4466 3.3604 -2.2502 13 6 2.2495 3.5049 -3.7605 14 6 3.0982 4.6687 -4.2765 15 6 2.6793 2.2122 -4.4571 16 6 0.7739 3.7784 -4.0584 17 6 0.5798 3.9214 -5.5461 18 1 1.4245 3.8263 -6.2124 19 6 -0.6760 4.1737 -6.0563 20 7 -1.7045 4.2890 -5.2450 21 14 -0.9166 4.3502 -7.9003 22 1 -1.2157 3.0205 -8.4900 23 1 -2.0477 5.2751 -8.1656 24 1 0.3224 4.8952 -8.5113 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 3.9711 0.4898 -0.6396 29 1 3.9375 1.1432 1.0158 30 1 5.7237 3.6868 0.2926 31 1 5.9525 1.9218 0.1139 32 1 6.8726 3.7968 -1.7439 33 1 6.4679 2.1009 -2.1675 34 1 4.6884 4.5933 -2.3783 35 1 4.9791 3.3281 -3.6140 36 1 1.6486 2.7435 -1.8371 37 1 2.4223 4.3456 -1.7846 38 1 4.1286 4.3376 -4.4057 39 1 2.7035 5.0099 -5.2336 40 1 3.0671 5.4877 -3.5580 41 1 2.0747 1.3831 -4.0894 42 1 2.5392 2.3153 -5.5331 43 1 3.7305 2.0173 -4.2448 44 1 0.1692 2.9494 -3.6908 45 1 0.4678 4.6994 -3.5622 46 1 -2.5880 4.4661 -5.6040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179897455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:11 Heat of formation + Delta-G solvation = -87.072463 kcal Electronic energy + Delta-G solvation = -24324.868770 eV Core-core repulsion = 21021.540247 eV Total energy + Delta-G solvation = -3303.328522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56139 -39.15538 -36.42857 -36.08044 -32.57758 -31.76791 -30.75430 -28.14454 -26.94143 -26.44860 -26.04601 -25.02350 -22.60054 -21.26475 -20.85123 -19.67905 -17.97403 -17.43754 -16.62275 -16.45868 -16.10216 -15.41993 -15.15223 -14.56518 -14.37992 -13.66558 -13.45784 -13.22493 -13.04979 -12.83957 -12.75549 -12.37922 -12.05295 -11.92327 -11.79753 -11.67516 -11.27685 -11.20136 -11.03161 -10.86967 -10.79920 -10.68799 -10.52648 -10.49696 -10.29516 -10.25740 -9.92668 -9.76937 -9.53122 -8.88941 -8.71998 -8.26191 -8.06489 -5.90553 -3.90557 2.39018 2.88281 3.36145 3.42429 3.45240 4.18558 4.52435 4.62834 4.69825 4.98094 5.04471 5.18187 5.22471 5.31152 5.36182 5.44668 5.47517 5.60295 5.66734 5.71536 5.81050 5.83777 5.84755 5.92430 5.98922 6.06240 6.22890 6.28173 6.43310 6.47673 6.59879 6.66630 6.71933 6.82262 6.96608 7.20507 7.34367 7.34557 7.40804 7.55248 7.79637 7.94050 7.95871 8.10638 8.54726 9.15006 9.71481 11.21061 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.005487 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.784061 B = 5101.864328 C = 6393.160664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.460 3.540 4 O -0.496 6.496 5 C -0.096 4.096 6 C 0.067 3.933 7 H 0.065 0.935 8 C -0.123 4.123 9 C -0.127 4.127 10 C 0.032 3.968 11 N -0.507 5.507 12 C 0.053 3.947 13 C -0.059 4.059 14 C -0.146 4.146 15 C -0.113 4.113 16 C 0.038 3.962 17 C -0.505 4.505 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.026 0.974 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.038 0.962 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.013 0.987 45 H 0.011 0.989 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.477 -6.773 11.890 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.303 3.697 4 O -0.383 6.383 5 C -0.134 4.134 6 C -0.042 4.042 7 H 0.083 0.917 8 C -0.161 4.161 9 C -0.165 4.165 10 C -0.096 4.096 11 N -0.231 5.231 12 C -0.075 4.075 13 C -0.059 4.059 14 C -0.203 4.203 15 C -0.170 4.170 16 C 0.000 4.000 17 C -0.544 4.544 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.031 0.969 45 H 0.030 0.970 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.013 -6.952 11.658 18.804 hybrid contribution -0.707 1.035 -0.598 1.389 sum 12.306 -5.917 11.060 17.572 Atomic orbital electron populations 1.23259 0.76320 1.03406 1.02917 1.86470 1.23501 1.33801 1.84266 1.23773 0.92287 0.81331 0.72340 1.90674 1.67316 1.36183 1.44146 1.21457 0.87588 1.00777 1.03574 1.22251 0.95571 0.95092 0.91274 0.91668 1.22408 0.93903 1.01921 0.97879 1.22553 0.97614 1.01464 0.94890 1.23635 0.89844 0.95842 1.00251 1.64787 1.02927 1.47854 1.07561 1.22775 0.90142 0.96946 0.97594 1.20627 0.99121 0.94921 0.91238 1.22300 0.98399 0.97518 1.02042 1.21608 0.99000 0.96355 1.00017 1.19074 0.88096 0.96480 0.96307 1.21250 0.93313 1.47442 0.92350 0.92314 1.25019 0.96324 0.95874 0.97407 1.69978 0.99502 1.50012 1.34209 0.86677 0.77667 0.77831 0.86309 1.20817 1.21426 1.19964 0.91239 0.88415 0.92203 0.87381 0.87756 0.91458 0.90965 0.91480 0.90897 0.93622 0.88744 0.89521 0.95608 0.93607 0.91307 0.94702 0.94312 0.92972 0.93810 0.96908 0.97041 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.09 10.56 -39.24 -0.41 -5.50 16 3 C 0.46 6.81 7.14 36.01 0.26 7.06 16 4 O -0.50 -8.97 12.69 -18.75 -0.24 -9.21 16 5 C -0.10 -1.09 5.25 -27.88 -0.15 -1.23 16 6 C 0.07 0.86 2.42 -66.64 -0.16 0.70 16 7 H 0.07 0.96 7.08 -51.93 -0.37 0.59 16 8 C -0.12 -1.19 6.56 -25.37 -0.17 -1.36 16 9 C -0.13 -1.31 7.06 -24.87 -0.18 -1.49 16 10 C 0.03 0.43 4.18 -1.90 -0.01 0.42 16 11 N -0.51 -7.79 3.85 -222.57 -0.86 -8.65 16 12 C 0.05 1.02 3.54 -3.82 -0.01 1.00 16 13 C -0.06 -1.24 0.53 -154.51 -0.08 -1.32 16 14 C -0.15 -2.85 7.19 37.16 0.27 -2.58 16 15 C -0.11 -2.27 7.70 37.16 0.29 -1.98 16 16 C 0.04 1.01 3.98 -27.88 -0.11 0.90 16 17 C -0.51 -14.25 7.35 -34.44 -0.25 -14.50 16 18 H 0.06 1.61 5.88 -52.48 -0.31 1.30 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 21 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.57 7.68 -51.93 -0.40 0.17 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.66 7.03 -51.92 -0.37 0.29 16 35 H 0.09 1.35 4.67 -51.93 -0.24 1.10 16 36 H 0.09 1.86 4.78 -51.93 -0.25 1.61 16 37 H 0.03 0.52 7.60 -51.93 -0.39 0.13 16 38 H 0.05 0.76 4.78 -51.93 -0.25 0.52 16 39 H 0.07 1.50 6.23 -51.93 -0.32 1.17 16 40 H 0.03 0.66 7.42 -51.93 -0.39 0.27 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 43 H 0.04 0.77 5.68 -51.93 -0.30 0.48 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -32.33 343.45 -7.66 -39.99 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.71 Total: -0.57 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 0.66 Total: -11.41 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.12 Total: -35.48 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.65 Total: -14.71 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.33 -7.66 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179897455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.082 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds