Wall clock time and date at job start Tue Mar 31 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99727 * 2 1 4 4 O 1.20817 * 120.00246 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99730 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.46577 * 208.51316 * 5 3 2 7 7 H 1.08995 * 110.33068 * 305.82133 * 6 5 3 8 8 C 1.54912 * 110.36698 * 183.45567 * 6 5 3 9 9 C 1.55399 * 101.73880 * 204.18614 * 8 6 5 10 10 C 1.54324 * 102.89949 * 35.48030 * 9 8 6 11 11 N 1.47440 * 107.36849 * 337.89553 * 10 9 8 12 12 C 1.46905 * 110.99778 * 236.65841 * 11 10 9 13 13 C 1.52999 * 109.47278 * 293.22203 * 12 11 10 14 14 C 1.53002 * 109.46933 * 306.45011 * 13 12 11 15 15 C 1.53001 * 109.47103 * 66.44402 * 13 12 11 16 16 C 1.52993 * 109.47328 * 186.44799 * 13 12 11 17 17 C 1.50694 * 109.47182 * 179.97438 * 16 13 12 18 18 H 1.08000 * 120.00490 * 0.02562 * 17 16 13 19 19 C 1.37880 * 120.00106 * 179.97438 * 17 16 13 20 20 N 1.31515 * 119.99892 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00368 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46691 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47186 * 120.00225 * 21 19 17 24 24 H 1.48494 * 109.47445 * 240.00336 * 21 19 17 25 25 H 1.08999 * 109.47325 * 299.99769 * 1 2 3 26 26 H 1.09001 * 109.47333 * 59.99937 * 1 2 3 27 27 H 1.09004 * 109.47221 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47554 * 88.51250 * 5 3 2 29 29 H 1.09004 * 109.47173 * 328.50551 * 5 3 2 30 30 H 1.08991 * 110.99284 * 322.18588 * 8 6 5 31 31 H 1.08999 * 110.99058 * 85.97518 * 8 6 5 32 32 H 1.08997 * 110.68250 * 277.17742 * 9 8 6 33 33 H 1.08995 * 110.84725 * 153.86259 * 9 8 6 34 34 H 1.08995 * 109.88869 * 218.40718 * 10 9 8 35 35 H 1.09004 * 109.88467 * 97.38028 * 10 9 8 36 36 H 1.08992 * 109.46998 * 53.22360 * 12 11 10 37 37 H 1.09005 * 109.46672 * 173.22325 * 12 11 10 38 38 H 1.09000 * 109.47100 * 63.64588 * 14 13 12 39 39 H 1.09002 * 109.46779 * 183.64743 * 14 13 12 40 40 H 1.09005 * 109.47275 * 303.64480 * 14 13 12 41 41 H 1.09007 * 109.46537 * 45.63848 * 15 13 12 42 42 H 1.09000 * 109.47001 * 165.63046 * 15 13 12 43 43 H 1.08993 * 109.47700 * 285.63625 * 15 13 12 44 44 H 1.08999 * 109.47436 * 299.99974 * 16 13 12 45 45 H 1.09005 * 109.47217 * 60.00267 * 16 13 12 46 46 H 0.97000 * 120.00218 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0094 2.5673 0.6881 7 1 3.5258 3.4278 0.2259 8 6 5.5504 2.7122 0.6227 9 6 5.8328 3.6382 1.8382 10 6 4.7848 3.1776 2.8731 11 7 3.6961 2.5147 2.1320 12 6 2.4031 3.1526 2.4137 13 6 2.0244 2.9134 3.8766 14 6 2.0754 1.4142 4.1781 15 6 3.0102 3.6502 4.7857 16 6 0.6090 3.4365 4.1291 17 6 0.2358 3.2004 5.5699 18 1 0.9380 2.7251 6.2388 19 6 -1.0019 3.5920 6.0346 20 7 -1.8569 4.1712 5.2203 21 14 -1.4644 3.3000 7.8207 22 1 -0.3355 2.6375 8.5223 23 1 -1.7585 4.6003 8.4749 24 1 -2.6664 2.4305 7.8851 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.9302 1.2675 -1.0280 29 1 3.9752 0.4187 0.5360 30 1 6.0390 1.7461 0.7487 31 1 5.8588 3.1849 -0.3097 32 1 5.6765 4.6832 1.5705 33 1 6.8428 3.4834 2.2174 34 1 4.3941 4.0394 3.4140 35 1 5.2383 2.4753 3.5727 36 1 2.4785 4.2240 2.2284 37 1 1.6381 2.7247 1.7657 38 1 3.0977 1.0546 4.0608 39 1 1.7433 1.2379 5.2012 40 1 1.4215 0.8822 3.4871 41 1 3.1654 4.6613 4.4092 42 1 2.6064 3.6970 5.7970 43 1 3.9609 3.1173 4.7983 44 1 0.5726 4.5045 3.9144 45 1 -0.0933 2.9115 3.4816 46 1 -2.7277 4.4464 5.5470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179897474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:13 Heat of formation + Delta-G solvation = -83.333851 kcal Electronic energy + Delta-G solvation = -24418.120509 eV Core-core repulsion = 21114.954105 eV Total energy + Delta-G solvation = -3303.166404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.55990 -39.14624 -36.40123 -36.08243 -32.56877 -31.84572 -30.67480 -28.20334 -26.97688 -26.63205 -25.79954 -25.04960 -22.60716 -21.29975 -20.91742 -19.55285 -17.90348 -17.43383 -16.77765 -16.35188 -16.09755 -15.58296 -15.26690 -14.44068 -13.92953 -13.76267 -13.56822 -13.24863 -13.10193 -12.87992 -12.57333 -12.32187 -12.15979 -11.98271 -11.82178 -11.76833 -11.39870 -11.20089 -11.05069 -10.84975 -10.76994 -10.67094 -10.51591 -10.40610 -10.28606 -10.22428 -9.99063 -9.72100 -9.45777 -8.91450 -8.69869 -8.26918 -7.94359 -5.91014 -3.90964 2.38943 2.90483 3.34844 3.42482 3.46189 4.14637 4.52163 4.63073 4.70155 4.98006 5.05915 5.22761 5.25214 5.30780 5.38055 5.42685 5.44525 5.59909 5.66475 5.72495 5.77986 5.84106 5.85485 5.91527 6.02283 6.16779 6.19397 6.30158 6.44987 6.46491 6.57918 6.71867 6.74997 6.84453 6.93452 7.24695 7.30772 7.36245 7.42776 7.59324 7.79774 7.94275 7.96375 8.10368 8.54632 9.14913 9.71200 11.20622 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.005578 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.846604 B = 5018.267759 C = 6217.092992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.463 3.537 4 O -0.498 6.498 5 C -0.096 4.096 6 C 0.074 3.926 7 H 0.067 0.933 8 C -0.120 4.120 9 C -0.144 4.144 10 C 0.027 3.973 11 N -0.520 5.520 12 C 0.045 3.955 13 C -0.055 4.055 14 C -0.110 4.110 15 C -0.141 4.141 16 C 0.036 3.964 17 C -0.504 4.504 18 H 0.060 0.940 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.886 3.114 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.024 0.976 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.033 0.967 41 H 0.037 0.963 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.011 0.989 45 H 0.013 0.987 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.725 -6.261 -11.575 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.306 3.694 4 O -0.385 6.385 5 C -0.134 4.134 6 C -0.034 4.034 7 H 0.085 0.915 8 C -0.158 4.158 9 C -0.183 4.183 10 C -0.100 4.100 11 N -0.244 5.244 12 C -0.081 4.081 13 C -0.056 4.056 14 C -0.168 4.168 15 C -0.198 4.198 16 C -0.001 4.001 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.537 5.537 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.029 0.971 45 H 0.031 0.969 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.266 -6.411 -11.408 18.634 hybrid contribution -0.699 0.859 0.717 1.320 sum 12.567 -5.551 -10.691 17.408 Atomic orbital electron populations 1.23267 0.76290 1.03443 1.02936 1.86474 1.23516 1.33725 1.84126 1.23713 0.92192 0.81331 0.72129 1.90626 1.67375 1.36260 1.44273 1.21380 0.87708 1.01421 1.02908 1.22412 0.95125 0.95408 0.90502 0.91503 1.22731 0.94306 1.00406 0.98400 1.22883 0.99946 0.99219 0.96215 1.23437 0.91325 0.98943 0.96319 1.63523 1.02899 1.54025 1.03972 1.22887 0.90237 0.95972 0.99051 1.20581 0.98061 0.95814 0.91103 1.21551 0.99255 0.95060 1.00904 1.22266 0.98147 0.98000 1.01377 1.19077 0.88822 0.95726 0.96517 1.21288 0.99488 1.37996 0.95485 0.92238 1.25025 0.96778 0.95623 0.97227 1.69992 1.07406 1.41540 1.34771 0.86625 0.78409 0.77754 0.85753 1.19777 1.21222 1.21189 0.91155 0.92228 0.88405 0.87645 0.87612 0.90522 0.91086 0.91777 0.91044 0.90144 0.90835 0.95761 0.88910 0.94006 0.92736 0.94753 0.94421 0.91662 0.93471 0.97075 0.96880 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.13 10.57 -39.26 -0.41 -5.55 16 3 C 0.46 6.89 6.99 36.01 0.25 7.14 16 4 O -0.50 -9.01 12.93 -18.74 -0.24 -9.25 16 5 C -0.10 -1.09 5.52 -27.88 -0.15 -1.24 16 6 C 0.07 0.95 2.36 -66.18 -0.16 0.79 16 7 H 0.07 0.97 7.35 -51.93 -0.38 0.59 16 8 C -0.12 -1.17 6.50 -24.45 -0.16 -1.33 16 9 C -0.14 -1.54 6.97 -24.76 -0.17 -1.71 16 10 C 0.03 0.37 4.88 -2.83 -0.01 0.36 16 11 N -0.52 -7.97 3.79 -223.38 -0.85 -8.81 16 12 C 0.05 0.87 3.60 -3.82 -0.01 0.86 16 13 C -0.06 -1.17 0.58 -154.51 -0.09 -1.26 16 14 C -0.11 -2.25 7.95 37.16 0.30 -1.96 16 15 C -0.14 -2.75 6.80 37.16 0.25 -2.50 16 16 C 0.04 0.96 4.04 -27.89 -0.11 0.85 16 17 C -0.50 -14.20 7.40 -34.44 -0.25 -14.45 16 18 H 0.06 1.63 5.79 -52.49 -0.30 1.33 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 21 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.21 4.25 -51.93 -0.22 0.99 16 35 H 0.07 0.99 7.51 -51.93 -0.39 0.60 16 36 H 0.02 0.49 7.95 -51.93 -0.41 0.08 16 37 H 0.09 1.96 4.25 -51.93 -0.22 1.74 16 38 H 0.04 0.76 7.53 -51.93 -0.39 0.37 16 39 H 0.05 1.18 6.51 -51.93 -0.34 0.85 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.71 6.96 -51.93 -0.36 0.35 16 42 H 0.06 1.40 6.28 -51.93 -0.33 1.07 16 43 H 0.05 0.79 5.24 -51.93 -0.27 0.52 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -32.27 346.59 -7.75 -40.01 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.82 Total: -0.31 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 0.64 Total: -11.49 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.11 Total: -35.62 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.66 Total: -14.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.27 -7.75 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179897474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.321 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds