Wall clock time and date at job start Tue Mar 31 2020 06:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46492 * 2 1 4 4 C 1.52997 * 109.47394 * 293.98438 * 3 2 1 5 5 C 1.52998 * 109.46760 * 173.98014 * 3 2 1 6 6 N 1.46502 * 109.46999 * 53.98632 * 3 2 1 7 7 C 1.46505 * 119.99567 * 236.26124 * 6 3 2 8 8 C 1.50696 * 109.47121 * 276.46897 * 7 6 3 9 9 H 1.07998 * 120.00082 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99774 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99897 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99838 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47304 * 90.00053 * 12 10 8 14 14 H 1.48502 * 109.47271 * 209.99948 * 12 10 8 15 15 H 1.48502 * 109.47387 * 329.99662 * 12 10 8 16 16 C 1.34777 * 120.00172 * 56.26222 * 6 3 2 17 17 O 1.21275 * 119.99905 * 4.98520 * 16 6 3 18 18 C 1.50703 * 119.99967 * 184.97919 * 16 6 3 19 19 C 1.53180 * 109.54212 * 66.73135 * 18 16 6 20 20 C 1.53087 * 109.16195 * 176.85142 * 19 18 16 21 21 O 1.42909 * 109.41289 * 302.38751 * 20 19 18 22 22 C 1.42903 * 114.09739 * 61.15963 * 21 20 19 23 23 C 1.53089 * 109.41382 * 298.84219 * 22 21 20 24 24 H 1.08998 * 109.47220 * 299.99541 * 1 2 3 25 25 H 1.08993 * 109.47879 * 60.00190 * 1 2 3 26 26 H 1.09007 * 109.46644 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47220 * 240.00459 * 2 1 3 28 28 H 1.08995 * 109.47360 * 119.99827 * 2 1 3 29 29 H 1.08998 * 109.47241 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.46773 * 300.00396 * 4 3 2 31 31 H 1.08997 * 109.46932 * 59.99686 * 4 3 2 32 32 H 1.08995 * 109.47460 * 307.66553 * 5 3 2 33 33 H 1.09009 * 109.47024 * 67.66109 * 5 3 2 34 34 H 1.09001 * 109.47136 * 187.66045 * 5 3 2 35 35 H 1.08991 * 109.47098 * 36.47248 * 7 6 3 36 36 H 1.09006 * 109.46548 * 156.47255 * 7 6 3 37 37 H 0.97005 * 119.99771 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.61528 * 306.50980 * 18 16 6 39 39 H 1.09001 * 109.51753 * 296.75305 * 19 18 16 40 40 H 1.08992 * 109.52287 * 56.93761 * 19 18 16 41 41 H 1.09003 * 109.47739 * 182.41074 * 20 19 18 42 42 H 1.08990 * 109.48655 * 62.37117 * 20 19 18 43 43 H 1.09002 * 109.47702 * 178.86069 * 22 21 20 44 44 H 1.09001 * 109.48667 * 58.83339 * 22 21 20 45 45 H 1.08998 * 109.52487 * 297.69973 * 23 22 21 46 46 H 1.09006 * 109.51975 * 177.51225 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6570 2.1189 -1.3179 5 6 3.5624 1.4453 0.1513 6 7 1.4369 2.1736 1.1173 7 6 0.6823 3.4039 0.8654 8 6 1.6359 4.5667 0.7668 9 1 2.6977 4.4055 0.8807 10 6 1.1526 5.8365 0.5321 11 7 -0.1405 6.0329 0.3949 12 14 2.3346 7.2777 0.4091 13 1 2.7620 7.4482 -1.0028 14 1 1.6570 8.5147 0.8739 15 1 3.5243 7.0161 1.2584 16 6 1.5763 1.7144 2.3767 17 8 2.2753 0.7479 2.5958 18 6 0.8636 2.4020 3.5127 19 6 -0.6487 2.2143 3.3573 20 6 -1.3594 2.8478 4.5560 21 8 -0.8769 2.2536 5.7628 22 6 0.5227 2.4380 5.9849 23 6 1.3091 1.7881 4.8435 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0207 3.1464 -1.3181 30 1 2.1057 1.5749 -2.1491 31 1 0.5724 2.1168 -1.4256 32 1 3.8425 0.8469 1.0181 33 1 4.0173 1.0224 -0.7445 34 1 3.9121 2.4686 0.2878 35 1 0.1301 3.3066 -0.0692 36 1 -0.0164 3.5755 1.6843 37 1 -0.4806 6.9264 0.2302 38 1 1.1019 3.4656 3.5038 39 1 -0.9830 2.6968 2.4388 40 1 -0.8813 1.1503 3.3163 41 1 -2.4332 2.6799 4.4723 42 1 -1.1591 3.9190 4.5730 43 1 0.8048 1.9749 6.9305 44 1 0.7478 3.5039 6.0207 45 1 1.1160 0.7154 4.8326 46 1 2.3748 1.9658 4.9880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187524451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:37 Heat of formation + Delta-G solvation = -96.218037 kcal Electronic energy + Delta-G solvation = -25096.254630 eV Core-core repulsion = 21792.529526 eV Total energy + Delta-G solvation = -3303.725104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17379 -38.54431 -36.29867 -34.09820 -32.86772 -31.82098 -30.79650 -29.85361 -27.72298 -26.25613 -25.44454 -23.42121 -23.03704 -22.49061 -21.07254 -19.40114 -17.66170 -16.72323 -16.11821 -15.82743 -15.67920 -15.21713 -14.76477 -14.54066 -14.41784 -14.11423 -13.46391 -13.30605 -13.11167 -12.60849 -12.52066 -12.22797 -12.03963 -11.84491 -11.75990 -11.46294 -11.19339 -11.17264 -11.08732 -11.01025 -10.94909 -10.68923 -10.49886 -10.34264 -10.19929 -10.19429 -10.09182 -9.97948 -9.58068 -9.36596 -8.68638 -8.46346 -7.59937 -6.20003 -4.25666 3.19466 3.27470 3.30052 3.45537 3.89653 4.12448 4.31433 5.05205 5.11037 5.13524 5.19296 5.30393 5.34367 5.48051 5.52984 5.59092 5.66927 5.79954 5.84845 5.91549 5.97653 6.03921 6.08977 6.12759 6.15583 6.21681 6.24334 6.31709 6.32507 6.42731 6.50334 6.52367 6.62695 6.66164 6.71425 6.89266 6.95298 7.05441 7.26189 7.42257 7.64868 7.76551 8.06837 8.45110 8.80393 9.09865 9.41465 10.86074 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.008560 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.025466 B = 3270.275800 C = 4686.411213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.181 3.819 4 C -0.151 4.151 5 C -0.156 4.156 6 N -0.582 5.582 7 C 0.222 3.778 8 C -0.531 4.531 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.524 3.476 17 O -0.570 6.570 18 C -0.106 4.106 19 C -0.151 4.151 20 C 0.064 3.936 21 O -0.389 6.389 22 C 0.062 3.938 23 C -0.132 4.132 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 -6.600 3.039 7.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.096 3.904 4 C -0.208 4.208 5 C -0.214 4.214 6 N -0.312 5.312 7 C 0.103 3.897 8 C -0.569 4.569 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.312 3.688 17 O -0.451 6.451 18 C -0.127 4.127 19 C -0.188 4.188 20 C -0.013 4.013 21 O -0.308 6.308 22 C -0.015 4.015 23 C -0.170 4.170 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.451 -7.031 3.205 7.740 hybrid contribution 0.812 1.275 -0.490 1.589 sum 0.361 -5.756 2.715 6.374 Atomic orbital electron populations 1.21721 0.96150 1.00305 1.02031 1.21934 0.96030 0.96769 1.02421 1.20142 0.92561 0.90666 0.87018 1.22129 1.01759 1.02450 0.94461 1.22177 0.95229 1.02454 1.01562 1.48291 1.52354 1.25999 1.04594 1.19754 0.91845 0.79610 0.98515 1.21485 0.93924 0.91838 1.49696 0.92238 1.24903 0.95099 0.98698 0.95024 1.69909 1.11842 1.22560 1.48630 0.86598 0.81115 0.81919 0.78472 1.20582 1.21128 1.19882 1.20244 0.81051 0.83570 0.83915 1.90519 1.41236 1.29013 1.84350 1.21265 0.95620 1.02242 0.93579 1.22363 0.93925 1.02062 1.00494 1.22570 0.98349 0.96739 0.83596 1.87868 1.23486 1.78038 1.41381 1.22592 0.81224 0.99625 0.98079 1.21968 1.00286 1.01289 0.93427 0.92687 0.92877 0.93814 0.92361 0.90186 0.89894 0.93192 0.92159 0.91351 0.93272 0.92311 0.94311 0.93236 0.92609 0.87829 0.88539 0.91459 0.88971 0.92630 0.89184 0.93198 0.90658 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.45 37.16 0.35 -1.93 16 2 C -0.13 -2.22 4.60 -26.73 -0.12 -2.34 16 3 C 0.18 3.31 0.71 -131.82 -0.09 3.21 16 4 C -0.15 -2.67 7.02 37.16 0.26 -2.40 16 5 C -0.16 -2.82 8.35 37.16 0.31 -2.51 16 6 N -0.58 -11.60 1.54 -160.18 -0.25 -11.85 16 7 C 0.22 4.92 4.05 -5.19 -0.02 4.90 16 8 C -0.53 -13.12 8.20 -34.44 -0.28 -13.40 16 9 H 0.06 1.53 7.67 -52.49 -0.40 1.13 16 10 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -23.47 13.29 55.43 0.74 -22.73 16 12 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.52 10.45 5.87 -10.98 -0.06 10.38 16 17 O -0.57 -12.14 12.33 5.56 0.07 -12.07 16 18 C -0.11 -1.89 1.76 -91.59 -0.16 -2.05 16 19 C -0.15 -2.46 5.04 -26.59 -0.13 -2.59 16 20 C 0.06 0.95 6.84 37.20 0.25 1.20 16 21 O -0.39 -6.02 10.77 -35.23 -0.38 -6.40 16 22 C 0.06 0.86 6.84 37.20 0.25 1.11 16 23 C -0.13 -2.09 4.79 -26.59 -0.13 -2.21 16 24 H 0.05 0.94 7.03 -51.93 -0.36 0.58 16 25 H 0.05 0.81 6.60 -51.93 -0.34 0.47 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.48 6.26 -51.93 -0.33 1.15 16 29 H 0.08 1.67 6.73 -51.93 -0.35 1.32 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.07 5.47 -51.93 -0.28 0.79 16 32 H 0.07 1.31 6.49 -51.93 -0.34 0.97 16 33 H 0.05 0.76 8.13 -51.92 -0.42 0.34 16 34 H 0.06 1.14 8.00 -51.93 -0.42 0.73 16 35 H 0.04 0.91 6.03 -51.93 -0.31 0.60 16 36 H 0.05 1.12 3.95 -51.93 -0.21 0.91 16 37 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.10 2.01 7.67 -51.93 -0.40 1.61 16 39 H 0.10 1.69 5.42 -51.93 -0.28 1.40 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.26 7.94 -51.93 -0.41 0.85 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -26.85 342.75 -7.14 -33.99 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.79 Total: 5.86 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 0.33 Total: -7.07 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.49 Total: -34.57 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.31 Total: -18.47 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.85 -7.14 -33.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187524451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.229 kcal (2) G-P(sol) polarization free energy of solvation -26.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds