Wall clock time and date at job start Tue Mar 31 2020 06:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47418 * 2 1 4 4 C 1.53006 * 109.47065 * 187.47002 * 3 2 1 5 5 C 1.52997 * 109.47287 * 67.46975 * 3 2 1 6 6 N 1.46503 * 109.47078 * 307.46425 * 3 2 1 7 7 C 1.46500 * 119.99631 * 128.04684 * 6 3 2 8 8 C 1.50696 * 109.46840 * 90.00584 * 7 6 3 9 9 H 1.08001 * 120.00428 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00164 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99914 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00424 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47337 * 179.97438 * 12 10 8 14 14 H 1.48506 * 109.46960 * 60.00209 * 12 10 8 15 15 H 1.48502 * 109.47216 * 300.00294 * 12 10 8 16 16 C 1.34778 * 120.00131 * 308.05512 * 6 3 2 17 17 O 1.21280 * 120.00167 * 186.67304 * 16 6 3 18 18 C 1.50703 * 119.99949 * 6.66716 * 16 6 3 19 19 C 1.52999 * 109.47013 * 192.57661 * 18 16 6 20 20 H 1.09005 * 109.82270 * 305.70127 * 19 18 16 21 21 C 1.54384 * 109.82996 * 184.81825 * 19 18 16 22 22 C 1.55448 * 102.18501 * 219.18201 * 21 19 18 23 23 C 1.54940 * 100.98927 * 34.03858 * 22 21 19 24 24 O 1.43237 * 109.83139 * 66.59016 * 19 18 16 25 25 H 1.08998 * 109.47693 * 184.92374 * 1 2 3 26 26 H 1.09004 * 109.46790 * 304.92099 * 1 2 3 27 27 H 1.09004 * 109.47058 * 64.91595 * 1 2 3 28 28 H 1.09002 * 109.46841 * 239.99233 * 2 1 3 29 29 H 1.09005 * 109.47037 * 120.00213 * 2 1 3 30 30 H 1.08996 * 109.46961 * 170.25117 * 4 3 2 31 31 H 1.09001 * 109.46844 * 290.25272 * 4 3 2 32 32 H 1.09002 * 109.47126 * 50.24645 * 4 3 2 33 33 H 1.09002 * 109.47142 * 299.99669 * 5 3 2 34 34 H 1.08992 * 109.47117 * 60.00028 * 5 3 2 35 35 H 1.08999 * 109.46905 * 180.02562 * 5 3 2 36 36 H 1.08992 * 109.47655 * 330.00459 * 7 6 3 37 37 H 1.09004 * 109.46757 * 210.00361 * 7 6 3 38 38 H 0.96995 * 119.99679 * 359.97438 * 11 10 8 39 39 H 1.08999 * 109.47396 * 312.57723 * 18 16 6 40 40 H 1.09010 * 109.46908 * 72.57690 * 18 16 6 41 41 H 1.09009 * 110.84581 * 337.31862 * 21 19 18 42 42 H 1.09001 * 110.84808 * 100.93686 * 21 19 18 43 43 H 1.09002 * 111.05951 * 276.12419 * 22 21 19 44 44 H 1.09004 * 111.18188 * 152.00963 * 22 21 19 45 45 H 1.09000 * 110.31057 * 204.69493 * 23 22 21 46 46 H 1.09002 * 110.31267 * 82.52202 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5586 1.4464 -0.1875 5 6 1.6890 2.1076 1.3324 6 7 1.4108 2.1829 -1.0963 7 6 0.7437 3.4597 -0.8298 8 6 1.7358 4.5847 -0.9752 9 1 2.7608 4.3701 -1.2392 10 6 1.3350 5.8880 -0.7710 11 7 0.0869 6.1494 -0.4490 12 14 2.5649 7.2825 -0.9505 13 1 1.8885 8.5768 -0.6817 14 1 3.1100 7.2870 -2.3319 15 1 3.6739 7.0922 0.0186 16 6 1.4454 1.6895 -2.3501 17 8 1.0329 2.3558 -3.2757 18 6 1.9967 0.3097 -2.6018 19 6 2.2143 0.1136 -4.1035 20 1 1.2900 0.3241 -4.6415 21 6 2.6641 -1.3366 -4.3825 22 6 3.7313 -1.1408 -5.4957 23 6 4.3511 0.2157 -5.0753 24 8 3.2532 0.9867 -4.5620 25 1 -0.3634 -1.0238 0.0882 26 1 -0.3633 0.5883 0.8427 27 1 -0.3633 0.4357 -0.9308 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9006 2.4668 -0.3607 31 1 4.0363 1.0502 0.7085 32 1 3.8205 0.8251 -1.0439 33 1 0.6072 2.1048 1.4660 34 1 2.1572 1.5566 2.1479 35 1 2.0520 3.1353 1.3321 36 1 0.3443 3.4563 0.1843 37 1 -0.0708 3.5994 -1.5406 38 1 -0.5516 5.4253 -0.3554 39 1 2.9466 0.1970 -2.0792 40 1 1.2904 -0.4360 -2.2366 41 1 3.1091 -1.7827 -3.4930 42 1 1.8304 -1.9386 -4.7441 43 1 3.2644 -1.0716 -6.4782 44 1 4.4756 -1.9368 -5.4722 45 1 4.7922 0.7139 -5.9386 46 1 5.1022 0.0644 -4.3000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189901398.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:04 Heat of formation + Delta-G solvation = -73.617051 kcal Electronic energy + Delta-G solvation = -24772.799305 eV Core-core repulsion = 21470.054253 eV Total energy + Delta-G solvation = -3302.745052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25043 -38.92866 -36.62377 -33.71798 -32.25353 -31.71316 -31.33406 -30.10481 -28.26508 -26.14829 -25.81153 -23.30365 -22.63859 -21.86742 -21.37745 -20.12358 -18.02439 -16.98358 -16.74991 -16.06145 -15.62595 -15.35549 -14.75375 -14.64314 -14.01843 -13.84278 -13.65040 -13.43310 -13.19161 -12.87436 -12.70621 -12.28953 -12.07856 -11.82529 -11.79052 -11.72467 -11.51621 -11.33212 -11.14893 -11.09784 -10.96592 -10.93896 -10.73088 -10.58200 -10.44389 -10.29296 -10.04344 -9.95661 -9.21575 -8.98806 -8.78266 -8.27071 -7.44936 -6.26844 -3.97043 3.47445 3.52111 3.54742 3.70520 3.89115 4.00757 4.43364 4.62082 4.70686 4.83055 4.96818 5.06144 5.16125 5.18910 5.25934 5.34891 5.43953 5.47504 5.52683 5.57605 5.61076 5.66999 5.74211 5.77946 5.82805 5.84985 5.92910 6.00058 6.03919 6.10563 6.22204 6.27405 6.31057 6.37603 6.47461 6.71270 6.84544 6.99977 7.24210 7.27445 7.61067 8.18363 8.48425 8.59127 8.90358 9.23179 9.71287 11.09793 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.006277 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.355499 B = 4459.717877 C = 5419.989411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.160 4.160 3 C 0.171 3.829 4 C -0.164 4.164 5 C -0.148 4.148 6 N -0.585 5.585 7 C 0.235 3.765 8 C -0.593 4.593 9 H 0.050 0.950 10 C 0.018 3.982 11 N -0.914 5.914 12 Si 1.068 2.932 13 H -0.283 1.283 14 H -0.288 1.288 15 H -0.289 1.289 16 C 0.514 3.486 17 O -0.533 6.533 18 C -0.170 4.170 19 C 0.093 3.907 20 H 0.087 0.913 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.045 3.955 24 O -0.359 6.359 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.025 0.975 38 H 0.266 0.734 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.523 -18.578 -1.427 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.197 4.197 3 C 0.085 3.915 4 C -0.222 4.222 5 C -0.206 4.206 6 N -0.318 5.318 7 C 0.115 3.885 8 C -0.632 4.632 9 H 0.068 0.932 10 C -0.186 4.186 11 N -0.550 5.550 12 Si 0.896 3.104 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.216 1.216 16 C 0.301 3.699 17 O -0.409 6.409 18 C -0.209 4.209 19 C 0.035 3.965 20 H 0.105 0.895 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.032 4.032 24 O -0.278 6.278 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.437 -16.314 -1.794 17.630 hybrid contribution -0.018 -1.941 -0.005 1.941 sum 6.420 -18.255 -1.799 19.434 Atomic orbital electron populations 1.21765 0.95560 1.00658 1.02745 1.22617 0.96963 0.96897 1.03253 1.20241 0.92149 0.90615 0.88502 1.22421 0.95458 1.03405 1.00925 1.22070 1.01768 1.02524 0.94188 1.48085 1.55176 1.22705 1.05807 1.19343 0.93414 0.79753 0.95987 1.22237 0.97170 0.92756 1.51029 0.93190 1.25725 0.99349 0.99435 0.94044 1.70807 1.03137 1.35990 1.45100 0.83562 0.74553 0.75790 0.76476 1.20818 1.21489 1.21594 1.20005 0.79464 0.87539 0.82937 1.90675 1.47820 1.60365 1.42058 1.22924 1.03383 0.97407 0.97222 1.22592 0.92420 0.87851 0.93667 0.89517 1.23240 0.99382 0.97142 0.99197 1.23278 0.98516 0.98132 0.99389 1.23376 0.90515 0.91083 0.98192 1.88666 1.27183 1.30892 1.81092 0.93309 0.92319 0.92583 0.89772 0.91416 0.91033 0.92360 0.92592 0.92189 0.92752 0.90017 0.95402 0.95698 0.92403 0.88243 0.87716 0.90493 0.90015 0.90444 0.90212 0.90030 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.99 37.16 0.33 -1.70 16 2 C -0.16 -2.08 4.29 -26.73 -0.11 -2.19 16 3 C 0.17 2.86 0.72 -131.82 -0.09 2.77 16 4 C -0.16 -2.57 8.44 37.16 0.31 -2.26 16 5 C -0.15 -2.50 6.94 37.16 0.26 -2.24 16 6 N -0.59 -12.54 1.68 -160.18 -0.27 -12.81 16 7 C 0.23 6.14 3.77 -5.20 -0.02 6.12 16 8 C -0.59 -17.23 8.96 -34.44 -0.31 -17.54 16 9 H 0.05 1.49 7.76 -52.49 -0.41 1.09 16 10 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 11 N -0.91 -28.28 13.65 55.43 0.76 -27.52 16 12 Si 1.07 26.47 29.90 -169.99 -5.08 21.39 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 C 0.51 11.14 6.12 -10.98 -0.07 11.07 16 17 O -0.53 -14.24 15.37 3.99 0.06 -14.17 16 18 C -0.17 -2.64 2.91 -27.88 -0.08 -2.72 16 19 C 0.09 1.41 3.06 -26.01 -0.08 1.33 16 20 H 0.09 1.45 7.77 -51.93 -0.40 1.05 16 21 C -0.15 -1.55 6.56 -24.71 -0.16 -1.71 16 22 C -0.16 -1.48 7.16 -24.41 -0.17 -1.66 16 23 C 0.05 0.56 7.78 38.18 0.30 0.86 16 24 O -0.36 -6.39 10.66 -36.80 -0.39 -6.78 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.83 6.45 -51.93 -0.33 0.49 16 27 H 0.06 0.89 6.63 -51.93 -0.34 0.54 16 28 H 0.08 1.00 3.62 -51.93 -0.19 0.81 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.35 8.09 -51.93 -0.42 0.92 16 31 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 32 H 0.06 0.81 5.16 -51.93 -0.27 0.54 16 33 H 0.06 1.03 5.67 -51.93 -0.29 0.73 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.64 7.14 -51.93 -0.37 1.27 16 36 H 0.03 0.72 5.54 -51.93 -0.29 0.43 16 37 H 0.03 0.74 7.39 -51.93 -0.38 0.36 16 38 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 39 H 0.10 1.43 4.05 -51.93 -0.21 1.22 16 40 H 0.11 1.36 5.61 -51.92 -0.29 1.06 16 41 H 0.08 0.68 7.85 -51.92 -0.41 0.27 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -35.29 342.92 -7.26 -42.55 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.50 Total: 1.62 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 0.00 Total: -9.44 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.49 Total: -40.33 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.33 Total: -20.95 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -5.08 Total: 21.39 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.29 -7.26 -42.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189901398.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.069 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds