Wall clock time and date at job start Tue Mar 31 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46924 * 2 1 4 4 C 1.52996 * 109.47507 * 307.49513 * 3 2 1 5 5 C 1.53004 * 109.47055 * 187.49198 * 3 2 1 6 6 N 1.46504 * 109.46863 * 67.49860 * 3 2 1 7 7 C 1.46501 * 119.99587 * 249.79652 * 6 3 2 8 8 C 1.50701 * 109.47041 * 97.84764 * 7 6 3 9 9 H 1.07998 * 119.99645 * 5.67359 * 8 7 6 10 10 C 1.37872 * 120.00196 * 185.66572 * 8 7 6 11 11 N 1.31511 * 119.99781 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00273 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46727 * 60.00200 * 12 10 8 14 14 H 1.48503 * 109.47132 * 300.00471 * 12 10 8 15 15 H 1.48496 * 109.47123 * 180.02562 * 12 10 8 16 16 C 1.34772 * 120.00073 * 69.80185 * 6 3 2 17 17 O 1.21283 * 119.99780 * 177.11049 * 16 6 3 18 18 C 1.50698 * 120.00495 * 357.10454 * 16 6 3 19 19 C 1.53001 * 109.47570 * 194.52614 * 18 16 6 20 20 H 1.09005 * 109.86895 * 53.99437 * 19 18 16 21 21 C 1.54102 * 109.87932 * 174.99734 * 19 18 16 22 22 C 1.54807 * 104.18269 * 121.45507 * 21 19 18 23 23 C 1.54990 * 102.09715 * 20.88037 * 22 21 19 24 24 O 1.43740 * 109.87682 * 292.83306 * 19 18 16 25 25 H 1.09000 * 109.47398 * 298.27195 * 1 2 3 26 26 H 1.08994 * 109.47351 * 58.27687 * 1 2 3 27 27 H 1.09002 * 109.47443 * 178.27444 * 1 2 3 28 28 H 1.09000 * 109.47459 * 240.00401 * 2 1 3 29 29 H 1.08997 * 109.47413 * 120.00340 * 2 1 3 30 30 H 1.08996 * 109.47124 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.46987 * 299.99848 * 4 3 2 32 32 H 1.09007 * 109.46815 * 59.99735 * 4 3 2 33 33 H 1.08995 * 109.47548 * 327.11241 * 5 3 2 34 34 H 1.09004 * 109.46978 * 87.10953 * 5 3 2 35 35 H 1.09003 * 109.47174 * 207.10506 * 5 3 2 36 36 H 1.09000 * 109.47415 * 337.84872 * 7 6 3 37 37 H 1.09001 * 109.47247 * 217.84455 * 7 6 3 38 38 H 0.97002 * 120.00310 * 359.97438 * 11 10 8 39 39 H 1.09008 * 109.47059 * 314.52686 * 18 16 6 40 40 H 1.09000 * 109.46958 * 74.52050 * 18 16 6 41 41 H 1.09000 * 110.48977 * 240.13346 * 21 19 18 42 42 H 1.08996 * 110.48339 * 2.78011 * 21 19 18 43 43 H 1.09003 * 110.90595 * 139.08295 * 22 21 19 44 44 H 1.09006 * 110.90939 * 262.64200 * 22 21 19 45 45 H 1.09009 * 110.61709 * 81.47460 * 23 22 21 46 46 H 1.08994 * 110.62252 * 204.31963 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.3821 2.2161 -1.1444 5 6 3.5583 1.4466 -0.1881 6 7 1.7042 2.0791 1.2761 7 6 0.6897 3.1348 1.3235 8 6 -0.6293 2.5451 1.7519 9 1 -0.6849 1.5102 2.0555 10 6 -1.7650 3.3268 1.7565 11 7 -1.6973 4.5870 1.3864 12 14 -3.4001 2.5956 2.2868 13 1 -3.2941 2.1088 3.6858 14 1 -3.7485 1.4619 1.3932 15 1 -4.4576 3.6347 2.2026 16 6 2.3289 1.6935 2.4064 17 8 2.0892 2.2560 3.4538 18 6 3.3250 0.5633 2.3689 19 6 3.6108 0.0877 3.7948 20 1 2.6757 -0.1603 4.2970 21 6 4.5308 -1.1481 3.7605 22 6 5.7706 -0.7209 4.5832 23 6 5.2114 0.4520 5.4281 24 8 4.3027 1.1156 4.5233 25 1 -0.3634 0.4868 0.9051 26 1 -0.3634 0.5403 -0.8741 27 1 -0.3634 -1.0272 -0.0309 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7451 3.2438 -1.1441 31 1 1.6319 1.7424 -2.0938 32 1 0.3003 2.2131 -1.0104 33 1 3.9853 0.5613 0.2829 34 1 3.7926 1.4405 -1.2526 35 1 3.9789 2.3412 0.2712 36 1 0.5839 3.5817 0.3349 37 1 0.9945 3.9000 2.0374 38 1 -0.8484 4.9666 1.1107 39 1 2.9164 -0.2620 1.7857 40 1 4.2505 0.9099 1.9091 41 1 4.0397 -2.0024 4.2263 42 1 4.8158 -1.3830 2.7350 43 1 6.1113 -1.5342 5.2241 44 1 6.5736 -0.3814 3.9289 45 1 4.6775 0.0759 6.3010 46 1 6.0143 1.1240 5.7309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189901416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:07 Heat of formation + Delta-G solvation = -73.338785 kcal Electronic energy + Delta-G solvation = -24721.749795 eV Core-core repulsion = 21419.016809 eV Total energy + Delta-G solvation = -3302.732986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12734 -38.91174 -36.63007 -33.58666 -32.24636 -31.68229 -31.49514 -29.88648 -28.36052 -26.01479 -25.74139 -23.14153 -22.76775 -22.08929 -21.10478 -20.17526 -18.04650 -16.86194 -16.45670 -16.06185 -15.49391 -15.29301 -15.07012 -14.41262 -14.18888 -13.74964 -13.64837 -13.60574 -13.11515 -12.96742 -12.49599 -12.36126 -12.06348 -12.04693 -11.76321 -11.67536 -11.28571 -11.23991 -11.15741 -11.06170 -10.91452 -10.62724 -10.57905 -10.47740 -10.37656 -10.29380 -10.07188 -9.80867 -9.39343 -8.90889 -8.74188 -8.30180 -7.44353 -6.29102 -3.99731 3.45021 3.49813 3.55708 3.66611 3.89132 4.05128 4.53297 4.58086 4.72961 4.88554 5.00758 5.06668 5.16563 5.25646 5.29722 5.37841 5.42658 5.44787 5.60111 5.62559 5.66804 5.72166 5.77111 5.82460 5.86544 5.92706 5.98046 6.05685 6.13179 6.17899 6.21515 6.28849 6.37611 6.56350 6.61179 6.81304 6.96676 7.11591 7.16102 7.33709 7.60956 8.14661 8.48917 8.55616 8.86864 9.25009 9.67667 11.06645 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.005846 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.556402 B = 4788.767103 C = 5488.628115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.133 4.133 3 C 0.167 3.833 4 C -0.150 4.150 5 C -0.171 4.171 6 N -0.589 5.589 7 C 0.231 3.769 8 C -0.592 4.592 9 H 0.058 0.942 10 C 0.019 3.981 11 N -0.912 5.912 12 Si 1.064 2.936 13 H -0.289 1.289 14 H -0.288 1.288 15 H -0.283 1.283 16 C 0.509 3.491 17 O -0.525 6.525 18 C -0.160 4.160 19 C 0.092 3.908 20 H 0.070 0.930 21 C -0.153 4.153 22 C -0.155 4.155 23 C 0.041 3.959 24 O -0.350 6.350 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.034 0.966 37 H 0.022 0.978 38 H 0.267 0.733 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.489 -12.769 -1.938 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.171 4.171 3 C 0.081 3.919 4 C -0.207 4.207 5 C -0.229 4.229 6 N -0.322 5.322 7 C 0.111 3.889 8 C -0.631 4.631 9 H 0.075 0.925 10 C -0.185 4.185 11 N -0.549 5.549 12 Si 0.893 3.107 13 H -0.215 1.215 14 H -0.215 1.215 15 H -0.208 1.208 16 C 0.295 3.705 17 O -0.401 6.401 18 C -0.199 4.199 19 C 0.034 3.966 20 H 0.088 0.912 21 C -0.191 4.191 22 C -0.192 4.192 23 C -0.036 4.036 24 O -0.268 6.268 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.697 -11.849 -1.197 16.693 hybrid contribution 1.699 -0.724 -0.290 1.869 sum 13.396 -12.573 -1.487 18.432 Atomic orbital electron populations 1.22241 0.94456 1.00307 1.05949 1.22166 0.98140 0.95753 1.01037 1.20304 0.93275 0.92845 0.85432 1.22143 1.03304 0.99506 0.95758 1.22672 0.95795 1.02422 1.01993 1.48186 1.39796 1.38797 1.05394 1.19393 0.86151 0.86224 0.97128 1.22269 0.93588 0.98951 1.48245 0.92452 1.25685 1.02778 0.94985 0.95049 1.70797 1.29250 1.13077 1.41786 0.83608 0.75516 0.75209 0.76396 1.21506 1.21469 1.20804 1.20077 0.81828 0.84577 0.83984 1.90701 1.64043 1.55481 1.29873 1.22748 1.00687 0.99486 0.97019 1.22492 0.95445 0.86566 0.92110 0.91176 1.23047 0.96172 0.98451 1.01431 1.23125 0.98112 0.98894 0.99100 1.23526 0.92872 0.94040 0.93211 1.89114 1.55251 1.28957 1.53513 0.88210 0.92568 0.94557 0.92208 0.91655 0.92505 0.92584 0.89723 0.91689 0.91974 0.92066 0.94787 0.96025 0.92301 0.87515 0.88273 0.90647 0.90420 0.90579 0.90692 0.92537 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 9.20 37.16 0.34 -2.66 16 2 C -0.13 -1.98 4.77 -26.73 -0.13 -2.11 16 3 C 0.17 2.75 0.72 -131.82 -0.09 2.66 16 4 C -0.15 -2.47 6.40 37.16 0.24 -2.23 16 5 C -0.17 -2.27 7.27 37.16 0.27 -2.00 16 6 N -0.59 -12.45 2.05 -160.18 -0.33 -12.78 16 7 C 0.23 5.92 3.92 -5.19 -0.02 5.90 16 8 C -0.59 -16.39 7.99 -34.44 -0.28 -16.66 16 9 H 0.06 1.61 5.62 -52.49 -0.29 1.31 16 10 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 11 N -0.91 -27.58 13.65 55.43 0.76 -26.82 16 12 Si 1.06 25.62 29.90 -169.99 -5.08 20.54 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 16 C 0.51 11.02 6.97 -10.99 -0.08 10.94 16 17 O -0.53 -14.00 15.12 -11.08 -0.17 -14.17 16 18 C -0.16 -2.52 2.94 -27.88 -0.08 -2.60 16 19 C 0.09 1.42 2.98 -26.16 -0.08 1.34 16 20 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 21 C -0.15 -1.64 6.64 -25.20 -0.17 -1.80 16 22 C -0.15 -1.50 7.15 -24.73 -0.18 -1.67 16 23 C 0.04 0.50 7.72 38.21 0.29 0.80 16 24 O -0.35 -6.14 10.28 -51.87 -0.53 -6.67 16 25 H 0.10 2.14 3.95 -51.93 -0.21 1.93 16 26 H 0.06 0.98 6.22 -51.93 -0.32 0.65 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 29 H 0.07 0.94 4.68 -51.93 -0.24 0.70 16 30 H 0.06 0.96 7.46 -51.93 -0.39 0.57 16 31 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 32 H 0.08 1.63 5.45 -51.93 -0.28 1.35 16 33 H 0.06 0.74 5.18 -51.93 -0.27 0.47 16 34 H 0.06 0.70 7.86 -51.93 -0.41 0.29 16 35 H 0.06 0.90 7.89 -51.93 -0.41 0.49 16 36 H 0.03 0.86 4.96 -51.93 -0.26 0.60 16 37 H 0.02 0.64 7.63 -51.93 -0.40 0.25 16 38 H 0.27 8.03 7.17 -40.82 -0.29 7.74 16 39 H 0.11 1.45 4.11 -51.92 -0.21 1.24 16 40 H 0.10 1.41 5.97 -51.93 -0.31 1.10 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -33.84 337.52 -7.61 -41.45 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.29 Total: 3.04 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.05 Total: -9.67 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.43 Total: -39.60 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.70 Total: -20.84 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.84 -7.61 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189901416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.888 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds