Wall clock time and date at job start Tue Mar 31 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34221 * 117.00057 * 2 1 4 4 O 1.20818 * 120.00287 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99836 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.53661 * 298.84609 * 5 3 2 7 7 C 1.54266 * 110.48505 * 61.45730 * 5 3 2 8 8 C 1.53869 * 106.60029 * 142.28977 * 7 5 3 9 9 C 1.54266 * 106.60080 * 359.97438 * 8 7 5 10 10 H 1.08993 * 110.60227 * 95.12013 * 9 8 7 11 11 N 1.46899 * 110.48813 * 217.71926 * 9 8 7 12 12 C 1.46899 * 110.99419 * 269.76892 * 11 9 8 13 13 C 1.53002 * 109.47388 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47046 * 300.00437 * 13 12 11 15 15 C 1.52996 * 109.46746 * 59.99856 * 13 12 11 16 16 C 1.52992 * 109.47582 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47439 * 180.02562 * 16 13 12 18 18 H 1.08006 * 119.99681 * 359.97438 * 17 16 13 19 19 C 1.37873 * 120.00265 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00133 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99914 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47437 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46920 * 120.00698 * 21 19 17 24 24 H 1.48500 * 109.46919 * 240.00148 * 21 19 17 25 25 C 1.54891 * 110.48520 * 176.22928 * 5 3 2 26 26 H 1.09003 * 109.46443 * 299.99541 * 1 2 3 27 27 H 1.08994 * 109.47333 * 59.99434 * 1 2 3 28 28 H 1.08994 * 109.47415 * 180.02562 * 1 2 3 29 29 H 1.09000 * 110.03049 * 261.57636 * 7 5 3 30 30 H 1.09001 * 110.03650 * 23.00119 * 7 5 3 31 31 H 1.08999 * 110.03445 * 119.28652 * 8 7 5 32 32 H 1.09009 * 110.03169 * 240.71589 * 8 7 5 33 33 H 1.00900 * 111.00192 * 145.82082 * 11 9 8 34 34 H 1.08999 * 109.47809 * 300.00078 * 12 11 9 35 35 H 1.09000 * 109.46960 * 60.00220 * 12 11 9 36 36 H 1.09008 * 109.47133 * 59.99490 * 14 13 12 37 37 H 1.08999 * 109.47032 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.47031 * 299.99653 * 14 13 12 39 39 H 1.09006 * 109.47194 * 60.00800 * 15 13 12 40 40 H 1.09005 * 109.47143 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.47648 * 300.00267 * 15 13 12 42 42 H 1.09004 * 109.46712 * 300.00013 * 16 13 12 43 43 H 1.09000 * 109.47160 * 59.99939 * 16 13 12 44 44 H 0.97001 * 120.00088 * 179.97438 * 20 19 17 45 45 H 1.08997 * 110.75776 * 321.69576 * 25 5 3 46 46 H 1.08994 * 110.75338 * 85.06863 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9744 0.8028 0.8932 7 6 4.1412 0.6137 -1.2704 8 6 5.3446 1.4685 -1.7048 9 6 5.4588 2.6196 -0.6842 10 1 6.1726 2.3675 0.1000 11 7 5.8532 3.8651 -1.3559 12 6 7.3152 4.0043 -1.3903 13 6 7.6868 5.3104 -2.0952 14 6 7.1424 5.2910 -3.5250 15 6 7.0798 6.4910 -1.3345 16 6 9.2094 5.4552 -2.1316 17 6 9.5753 6.7419 -2.8254 18 1 8.7993 7.3914 -3.2030 19 6 10.9006 7.0902 -2.9781 20 7 11.8455 6.2991 -2.5187 21 14 11.3541 8.6849 -3.8387 22 1 10.1166 9.3896 -4.2595 23 1 12.1227 9.5489 -2.9070 24 1 12.1836 8.3842 -5.0331 25 6 4.0320 2.7489 -0.0959 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 4.4660 -0.4027 -1.0478 30 1 3.3882 0.6012 -2.0584 31 1 6.2535 0.8670 -1.6931 32 1 5.1755 1.8710 -2.7037 33 1 5.4241 4.6651 -0.9155 34 1 7.7030 4.0186 -0.3717 35 1 7.7476 3.1630 -1.9319 36 1 6.0576 5.1877 -3.4995 37 1 7.4068 6.2217 -4.0271 38 1 7.5748 4.4500 -4.0670 39 1 7.4676 6.5049 -0.3158 40 1 7.3441 7.4215 -1.8369 41 1 5.9950 6.3877 -1.3089 42 1 9.5975 5.4688 -1.1131 43 1 9.6415 4.6141 -2.6738 44 1 12.7779 6.5439 -2.6265 45 1 3.3872 3.3150 -0.7681 46 1 4.0614 3.2093 0.8916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193506213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:01 Heat of formation + Delta-G solvation = -114.224728 kcal Electronic energy + Delta-G solvation = -22724.730740 eV Core-core repulsion = 19420.224807 eV Total energy + Delta-G solvation = -3304.505933 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89829 -38.64432 -37.07938 -36.48656 -33.47938 -31.99819 -29.43783 -28.54348 -27.37065 -26.68023 -26.29269 -24.71936 -22.73349 -22.32112 -20.31014 -20.02776 -17.88018 -17.71553 -17.10462 -16.61658 -16.20904 -15.81710 -15.23679 -14.60601 -14.29616 -14.08660 -13.74240 -13.61752 -13.33371 -13.06867 -12.68693 -12.49698 -12.10954 -11.97165 -11.80633 -11.71941 -11.47113 -11.28697 -11.10357 -11.05682 -10.95267 -10.83985 -10.73954 -10.66632 -10.47338 -10.41931 -10.20923 -10.06503 -9.65705 -8.99165 -8.79157 -8.30260 -8.08426 -5.94670 -3.94484 1.94833 2.42506 3.33647 3.41527 3.45237 4.13774 4.30838 4.37022 4.51044 4.75741 4.77390 4.85157 4.88216 5.18609 5.20227 5.25197 5.29344 5.37351 5.41269 5.56157 5.67290 5.73763 5.80055 5.91746 5.99747 6.05085 6.07713 6.12871 6.23479 6.31932 6.40104 6.54842 6.69691 6.82733 6.86235 7.23928 7.27326 7.29499 7.45146 7.48237 7.69820 7.73831 7.88085 8.05996 8.50666 9.11198 9.68309 11.17029 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.047427 B = 0.002720 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.234503 B =10290.690524 C =10501.767046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.505 6.505 5 C -0.085 4.085 6 H 0.113 0.887 7 C -0.108 4.108 8 C -0.115 4.115 9 C 0.081 3.919 10 H 0.052 0.948 11 N -0.679 5.679 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.116 4.116 15 C -0.130 4.130 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.059 0.941 19 C 0.053 3.947 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.285 1.285 25 C -0.110 4.110 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.340 0.660 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.258 0.742 45 H 0.091 0.909 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.166 -13.561 5.770 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.392 6.392 5 C -0.105 4.105 6 H 0.131 0.869 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.029 4.029 10 H 0.070 0.930 11 N -0.311 5.311 12 C -0.058 4.058 13 C -0.059 4.059 14 C -0.173 4.173 15 C -0.187 4.187 16 C -0.004 4.004 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.148 4.148 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.067 0.933 45 H 0.109 0.891 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.250 -13.543 5.148 24.093 hybrid contribution 0.411 1.064 0.569 1.275 sum -18.839 -12.478 5.717 23.308 Atomic orbital electron populations 1.23265 0.76503 1.03637 1.02568 1.86524 1.23311 1.33652 1.84124 1.23795 0.92014 0.81212 0.71900 1.90674 1.67132 1.36373 1.44979 1.21896 0.86535 0.99862 1.02213 0.86943 1.22076 0.98114 0.99422 0.94951 1.22205 0.96902 0.95587 1.00671 1.22346 0.94431 0.91830 0.94312 0.93038 1.60657 1.09996 1.03452 1.57000 1.22158 0.85836 0.99472 0.98365 1.20623 0.99011 0.91565 0.94664 1.21600 0.98694 1.01155 0.95869 1.21774 0.97516 0.99832 0.99569 1.19130 0.87478 0.96978 0.96861 1.21280 0.91478 1.05370 1.36179 0.92246 1.25023 0.96832 0.96823 0.96013 1.69979 0.99783 1.37069 1.46961 0.86610 0.78459 0.84000 0.79378 1.19780 1.21223 1.21174 1.22652 0.96674 0.93392 1.02101 0.91965 0.91867 0.88124 0.90602 0.91364 0.91611 0.89923 0.83987 0.95877 0.91560 0.93874 0.92755 0.94211 0.94128 0.91741 0.94761 0.96948 0.96687 0.93255 0.89082 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.41 10.54 -39.24 -0.41 -3.82 16 3 C 0.47 5.06 7.12 36.01 0.26 5.32 16 4 O -0.50 -6.87 15.51 -18.74 -0.29 -7.16 16 5 C -0.09 -0.79 3.37 -90.11 -0.30 -1.09 16 6 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.11 -0.95 6.34 -25.62 -0.16 -1.11 16 8 C -0.12 -1.23 6.53 -25.62 -0.17 -1.40 16 9 C 0.08 0.94 3.19 -66.06 -0.21 0.73 16 10 H 0.05 0.60 7.82 -51.93 -0.41 0.20 16 11 N -0.68 -9.56 5.52 -104.99 -0.58 -10.14 16 12 C 0.07 1.19 4.51 -3.82 -0.02 1.17 16 13 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 14 C -0.12 -2.24 8.06 37.16 0.30 -1.95 16 15 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 16 C 0.03 0.83 4.04 -27.89 -0.11 0.72 16 17 C -0.50 -13.82 7.65 -34.44 -0.26 -14.08 16 18 H 0.06 1.59 5.68 -52.48 -0.30 1.29 16 19 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 20 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C -0.11 -1.17 5.27 -24.75 -0.13 -1.30 16 26 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 27 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.62 7.83 -51.93 -0.41 0.22 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.00 8.04 -51.92 -0.42 0.58 16 33 H 0.34 4.70 6.45 -39.29 -0.25 4.45 16 34 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.75 7.60 -51.92 -0.39 0.36 16 37 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 41 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.09 1.11 7.53 -51.93 -0.39 0.72 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -30.93 361.14 -7.99 -38.92 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.22 Total: -0.11 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 0.36 Total: -13.63 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.16 Total: -36.30 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.70 Total: -10.98 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.93 -7.99 -38.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193506213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.305 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds