Wall clock time and date at job start Tue Mar 31 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42905 * 113.99967 * 2 1 4 4 C 1.53002 * 109.47092 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46691 * 64.24520 * 4 3 2 6 6 C 1.46503 * 119.99528 * 264.65040 * 5 4 3 7 7 C 1.50699 * 109.47139 * 270.00141 * 6 5 4 8 8 H 1.07999 * 120.00171 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99898 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00122 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47247 * 89.99778 * 11 9 7 13 13 H 1.48498 * 109.47384 * 210.00125 * 11 9 7 14 14 H 1.48507 * 109.47149 * 330.00002 * 11 9 7 15 15 C 1.34771 * 120.00168 * 84.65674 * 5 4 3 16 16 O 1.21278 * 120.00370 * 184.81110 * 15 5 4 17 17 C 1.50708 * 120.00097 * 4.80947 * 15 5 4 18 18 H 1.08996 * 110.01460 * 336.41647 * 17 15 5 19 19 C 1.54262 * 110.03022 * 215.02562 * 17 15 5 20 20 C 1.54891 * 104.19535 * 217.05282 * 19 17 15 21 21 C 1.54893 * 102.74661 * 37.94682 * 20 19 17 22 22 C 1.53876 * 110.07324 * 97.83346 * 17 15 5 23 23 C 1.53001 * 110.03154 * 0.02562 * 22 17 15 24 24 C 1.52993 * 110.03178 * 238.59595 * 22 17 15 25 25 H 1.09005 * 109.47161 * 60.00401 * 1 2 3 26 26 H 1.09008 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47640 * 300.00378 * 1 2 3 28 28 H 1.08998 * 109.46970 * 59.99688 * 3 2 1 29 29 H 1.08996 * 109.46842 * 299.99917 * 3 2 1 30 30 H 1.08997 * 109.47579 * 304.24155 * 4 3 2 31 31 H 1.09002 * 109.46968 * 184.24100 * 4 3 2 32 32 H 1.08992 * 109.47249 * 30.00448 * 6 5 4 33 33 H 1.09002 * 109.46482 * 150.00470 * 6 5 4 34 34 H 0.96997 * 120.00090 * 180.02562 * 10 9 7 35 35 H 1.09003 * 110.48715 * 98.38276 * 19 17 15 36 36 H 1.08993 * 110.49093 * 335.73398 * 19 17 15 37 37 H 1.08995 * 110.76179 * 279.63056 * 20 19 17 38 38 H 1.08999 * 110.75717 * 156.25771 * 20 19 17 39 39 H 1.08997 * 110.48879 * 80.73222 * 21 20 19 40 40 H 1.08997 * 110.48652 * 203.38103 * 21 20 19 41 41 H 1.09001 * 109.46936 * 182.26385 * 23 22 17 42 42 H 1.08996 * 109.47321 * 302.26927 * 23 22 17 43 43 H 1.09004 * 109.47217 * 62.26483 * 23 22 17 44 44 H 1.09011 * 109.47142 * 301.37680 * 24 22 17 45 45 H 1.09000 * 109.47714 * 61.37560 * 24 22 17 46 46 H 1.08998 * 109.47395 * 181.38179 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9752 0.5476 -1.2432 6 6 4.2176 -0.8968 -1.2803 7 6 5.6557 -1.1741 -0.9255 8 1 6.3224 -0.3564 -0.6949 9 6 6.1203 -2.4719 -0.8952 10 7 5.3086 -3.4677 -1.1765 11 14 7.9027 -2.8158 -0.4546 12 1 8.0227 -3.0015 1.0139 13 1 8.3550 -4.0486 -1.1481 14 1 8.7475 -1.6707 -0.8794 15 6 4.1570 1.2902 -2.3530 16 8 4.4361 0.7524 -3.4036 17 6 4.0134 2.7890 -2.2887 18 1 3.3815 3.0674 -1.4455 19 6 3.4040 3.3183 -3.6033 20 6 4.1353 4.6618 -3.8472 21 6 5.5810 4.3527 -3.3848 22 6 5.3976 3.4467 -2.1498 23 6 6.4874 2.3732 -2.1210 24 6 5.4534 4.2854 -0.8715 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8517 0.5797 0.8504 31 1 3.9785 2.1777 0.0766 32 1 3.5641 -1.3934 -0.5632 33 1 4.0112 -1.2741 -2.2819 34 1 5.6353 -4.3807 -1.1548 35 1 2.3326 3.4828 -3.4880 36 1 3.5986 2.6242 -4.4207 37 1 3.6975 5.4554 -3.2418 38 1 4.1160 4.9257 -4.9045 39 1 6.1272 3.8256 -4.1670 40 1 6.0983 5.2719 -3.1101 41 1 7.4596 2.8461 -1.9821 42 1 6.2974 1.6845 -1.2978 43 1 6.4816 1.8242 -3.0627 44 1 4.6741 5.0470 -0.9022 45 1 5.2972 3.6406 -0.0066 46 1 6.4285 4.7664 -0.7947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228846992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:03 Heat of formation + Delta-G solvation = -98.087159 kcal Electronic energy + Delta-G solvation = -24657.118798 eV Core-core repulsion = 21353.312643 eV Total energy + Delta-G solvation = -3303.806156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24416 -37.82429 -37.01955 -34.76327 -32.61897 -32.01143 -29.73168 -29.10478 -27.08548 -26.84287 -25.90556 -24.45493 -22.81798 -22.60406 -20.60562 -19.31262 -17.56266 -16.81378 -16.39515 -15.94418 -15.71704 -15.15131 -15.10937 -14.67413 -14.56477 -13.88048 -13.75146 -13.23583 -13.15976 -12.88377 -12.61236 -12.27421 -12.14324 -11.96386 -11.61843 -11.45825 -11.42465 -11.18584 -11.06343 -10.92841 -10.85564 -10.77277 -10.50528 -10.40217 -10.35608 -10.32304 -10.14685 -10.00813 -9.48871 -9.41723 -8.66391 -8.32534 -7.50272 -5.93478 -3.97651 3.34738 3.41149 3.44157 3.52255 3.98901 4.09389 4.52040 4.63854 4.77651 4.87627 5.22915 5.28851 5.39485 5.40123 5.43433 5.46022 5.47888 5.51908 5.57131 5.61647 5.62573 5.66542 5.75338 5.79854 5.84794 5.87568 6.00624 6.05525 6.08344 6.16169 6.24841 6.28799 6.35437 6.47948 6.56478 6.62628 6.88862 7.33103 7.42303 7.65239 7.71452 8.05460 8.37031 8.59457 9.02342 9.24815 9.66577 11.14414 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.007272 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.943506 B = 3849.644046 C = 5263.900231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.043 3.957 4 C 0.110 3.890 5 N -0.590 5.590 6 C 0.250 3.750 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.520 3.480 16 O -0.543 6.543 17 C -0.112 4.112 18 H 0.082 0.918 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.051 4.051 23 C -0.155 4.155 24 C -0.139 4.139 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.261 0.739 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 16.657 1.972 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.035 4.035 4 C -0.015 4.015 5 N -0.320 5.320 6 C 0.131 3.869 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.307 3.693 16 O -0.420 6.420 17 C -0.134 4.134 18 H 0.101 0.899 19 C -0.151 4.151 20 C -0.158 4.158 21 C -0.150 4.150 22 C -0.052 4.052 23 C -0.212 4.212 24 C -0.196 4.196 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.864 15.953 1.411 17.056 hybrid contribution 0.689 -0.070 0.455 0.829 sum -5.175 15.883 1.866 16.809 Atomic orbital electron populations 1.22698 0.82085 1.02572 0.99107 1.88095 1.18679 1.26987 1.95129 1.23161 0.95523 0.85395 0.99442 1.21550 0.90961 0.98987 0.90013 1.48129 1.64809 1.10975 1.08133 1.19253 0.95817 0.72993 0.98822 1.21490 0.95872 0.92195 1.46652 0.92500 1.24911 0.97535 0.96139 0.95486 1.69951 1.35098 0.99149 1.49070 0.86585 0.85297 0.77803 0.78242 1.20760 1.21218 1.19956 1.20070 0.77054 0.88161 0.84023 1.90626 1.48535 1.73425 1.29464 1.22194 0.97688 0.93810 0.99663 0.89949 1.22341 0.98491 0.96950 0.97268 1.22449 0.95766 0.97014 1.00611 1.22483 0.96799 0.98620 0.97145 1.20998 0.93769 0.95087 0.95311 1.22162 0.96688 0.97925 1.04398 1.21959 1.01518 0.99298 0.96809 0.94624 0.89787 0.94678 0.93175 0.93743 0.89023 0.90061 0.94238 0.94255 0.92910 0.92107 0.89704 0.91888 0.91720 0.91223 0.91856 0.93370 0.91087 0.91092 0.92757 0.92431 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.47 10.08 -35.23 -0.36 -6.83 16 3 C 0.04 0.63 5.99 37.16 0.22 0.85 16 4 C 0.11 1.83 5.41 -4.04 -0.02 1.81 16 5 N -0.59 -12.64 2.15 -175.05 -0.38 -13.02 16 6 C 0.25 6.73 5.07 -5.19 -0.03 6.71 16 7 C -0.52 -14.92 9.39 -34.44 -0.32 -15.24 16 8 H 0.06 1.59 6.79 -52.49 -0.36 1.24 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 11 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.52 10.84 4.48 -10.98 -0.05 10.79 16 16 O -0.54 -13.70 14.33 5.56 0.08 -13.62 16 17 C -0.11 -1.73 2.22 -90.65 -0.20 -1.93 16 18 H 0.08 1.10 4.90 -51.93 -0.25 0.85 16 19 C -0.11 -1.59 6.32 -25.07 -0.16 -1.75 16 20 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 21 C -0.11 -1.41 5.90 -25.07 -0.15 -1.56 16 22 C -0.05 -0.72 0.94 -153.39 -0.14 -0.87 16 23 C -0.15 -2.71 7.23 37.16 0.27 -2.44 16 24 C -0.14 -1.58 8.03 37.15 0.30 -1.28 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.62 7.48 -51.93 -0.39 0.23 16 30 H 0.09 1.62 8.03 -51.93 -0.42 1.20 16 31 H 0.08 1.12 4.82 -51.93 -0.25 0.87 16 32 H 0.04 1.12 7.62 -51.93 -0.40 0.72 16 33 H 0.04 1.21 7.36 -51.93 -0.38 0.83 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.43 6.96 -51.93 -0.36 1.07 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.96 7.80 -51.93 -0.41 0.55 16 40 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.41 6.16 -51.93 -0.32 1.09 16 43 H 0.07 1.45 6.81 -51.93 -0.35 1.10 16 44 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 45 H 0.06 0.66 6.60 -51.93 -0.34 0.32 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -33.51 353.97 -7.04 -40.54 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.00 Total: 0.16 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 0.56 Total: -3.26 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.36 Total: -39.49 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.28 Total: -20.45 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.51 -7.04 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228846992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.543 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds