Wall clock time and date at job start Tue Mar 31 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47491 * 2 1 4 4 C 1.53003 * 109.47166 * 240.00369 * 2 1 3 5 5 C 1.53000 * 109.47134 * 120.00546 * 2 1 3 6 6 N 1.46494 * 109.47135 * 55.84464 * 5 2 1 7 7 C 1.46502 * 119.99861 * 267.90218 * 6 5 2 8 8 C 1.50704 * 109.47192 * 264.26247 * 7 6 5 9 9 H 1.08000 * 119.99954 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00161 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00161 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 120.00180 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47168 * 89.99679 * 12 10 8 14 14 H 1.48492 * 109.47125 * 209.99928 * 12 10 8 15 15 H 1.48500 * 109.46522 * 329.99791 * 12 10 8 16 16 C 1.34780 * 120.00157 * 87.90315 * 6 5 2 17 17 O 1.21279 * 119.99668 * 4.13202 * 16 6 5 18 18 C 1.50705 * 119.99920 * 184.13272 * 16 6 5 19 19 C 1.53175 * 109.54270 * 266.46611 * 18 16 6 20 20 C 1.53096 * 109.16016 * 183.14943 * 19 18 16 21 21 O 1.42908 * 109.41120 * 57.61145 * 20 19 18 22 22 C 1.42893 * 114.10055 * 298.84060 * 21 20 19 23 23 C 1.53093 * 109.41899 * 61.15508 * 22 21 20 24 24 H 1.09003 * 109.46887 * 300.00009 * 1 2 3 25 25 H 1.09009 * 109.47129 * 59.99331 * 1 2 3 26 26 H 1.08990 * 109.47652 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46984 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47115 * 300.00187 * 3 2 1 29 29 H 1.09008 * 109.46710 * 60.00397 * 3 2 1 30 30 H 1.09004 * 109.46703 * 304.01188 * 4 2 1 31 31 H 1.08998 * 109.47507 * 64.00996 * 4 2 1 32 32 H 1.08992 * 109.47535 * 184.01125 * 4 2 1 33 33 H 1.08998 * 109.46772 * 295.84359 * 5 2 1 34 34 H 1.09001 * 109.46951 * 175.84408 * 5 2 1 35 35 H 1.09002 * 109.47493 * 24.26151 * 7 6 5 36 36 H 1.09002 * 109.47318 * 144.26638 * 7 6 5 37 37 H 0.96995 * 119.99875 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.61112 * 26.69076 * 18 16 6 39 39 H 1.08997 * 109.52505 * 303.06180 * 19 18 16 40 40 H 1.09006 * 109.52028 * 63.25323 * 19 18 16 41 41 H 1.08996 * 109.48814 * 297.63047 * 20 19 18 42 42 H 1.09005 * 109.47617 * 177.59087 * 20 19 18 43 43 H 1.09006 * 109.47751 * 301.17875 * 22 21 20 44 44 H 1.08994 * 109.49439 * 181.15012 * 22 21 20 45 45 H 1.08996 * 109.52350 * 182.48740 * 23 22 21 46 46 H 1.08998 * 109.52040 * 62.29922 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7214 1.2492 6 7 1.4716 -2.0706 1.3001 7 6 0.2210 -2.3118 2.0241 8 6 0.5322 -2.7965 3.4167 9 1 1.5589 -2.9137 3.7309 10 6 -0.4936 -3.0905 4.2897 11 7 -0.2221 -3.5130 5.5052 12 14 -2.2694 -2.8886 3.7461 13 1 -2.7503 -4.1581 3.1443 14 1 -3.1110 -2.5477 4.9210 15 1 -2.3584 -1.7993 2.7407 16 6 2.0992 -3.0901 0.6810 17 8 3.1718 -2.9062 0.1457 18 6 1.4682 -4.4584 0.6540 19 6 1.9943 -5.2886 1.8288 20 6 1.4087 -6.7008 1.7482 21 8 1.7555 -7.2878 0.4922 22 6 1.2501 -6.5804 -0.6418 23 6 1.8291 -5.1632 -0.6572 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6190 -1.7260 -1.2860 31 1 1.7365 -0.1675 -2.1378 32 1 3.1275 -0.7839 -1.2142 33 1 1.7387 -0.1664 2.1376 34 1 3.1274 -0.7863 1.2127 35 1 -0.3503 -1.3853 2.0812 36 1 -0.3632 -3.0672 1.4986 37 1 -0.9438 -3.7202 6.1192 38 1 0.3850 -4.3633 0.7307 39 1 3.0818 -5.3417 1.7793 40 1 1.6937 -4.8228 2.7674 41 1 0.3237 -6.6503 1.8385 42 1 1.8131 -7.3087 2.5576 43 1 0.1629 -6.5282 -0.5827 44 1 1.5399 -7.1014 -1.5543 45 1 1.4106 -4.6079 -1.4966 46 1 2.9133 -5.2138 -0.7570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330522864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:40 Heat of formation + Delta-G solvation = -103.432130 kcal Electronic energy + Delta-G solvation = -24819.333422 eV Core-core repulsion = 21515.295491 eV Total energy + Delta-G solvation = -3304.037931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05733 -38.47788 -36.69621 -34.54213 -33.01672 -32.40214 -30.71394 -28.35038 -27.04953 -26.95061 -26.55722 -24.44649 -23.20126 -22.45269 -20.43885 -18.80354 -17.99068 -17.12770 -16.51037 -15.96810 -15.67749 -15.20696 -14.97781 -14.38802 -14.21933 -14.10507 -13.65274 -13.46527 -13.33407 -12.86265 -12.61607 -12.44920 -12.19505 -12.03694 -11.93421 -11.80235 -11.43480 -11.23012 -11.17113 -10.96706 -10.94457 -10.80887 -10.57608 -10.46946 -10.28923 -10.22925 -10.20974 -9.94345 -9.62847 -9.42365 -8.81596 -8.72027 -7.70887 -6.26878 -4.27502 3.11696 3.20222 3.22454 3.35380 3.82219 4.19087 4.21194 5.01941 5.04921 5.08102 5.12605 5.15262 5.23736 5.26759 5.40522 5.54767 5.67773 5.77252 5.78336 5.81033 5.82733 5.94862 5.99354 6.01431 6.03211 6.09589 6.13485 6.22069 6.27337 6.32029 6.35635 6.39984 6.43924 6.45679 6.59910 6.65367 6.71448 6.72395 6.87801 7.36353 7.40138 7.51124 8.13597 8.37814 8.77639 8.96905 9.32759 10.85167 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.009242 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.040330 B = 3029.023705 C = 4870.339572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.128 4.128 5 C 0.129 3.871 6 N -0.587 5.587 7 C 0.206 3.794 8 C -0.538 4.538 9 H 0.080 0.920 10 C 0.078 3.922 11 N -0.888 5.888 12 Si 0.866 3.134 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.528 3.472 17 O -0.565 6.565 18 C -0.102 4.102 19 C -0.147 4.147 20 C 0.066 3.934 21 O -0.389 6.389 22 C 0.064 3.936 23 C -0.139 4.139 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.026 0.974 37 H 0.266 0.734 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 1.694 -10.730 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.194 4.194 4 C -0.185 4.185 5 C 0.006 3.994 6 N -0.316 5.316 7 C 0.085 3.915 8 C -0.576 4.576 9 H 0.098 0.902 10 C -0.126 4.126 11 N -0.525 5.525 12 Si 0.692 3.308 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.189 1.189 16 C 0.317 3.683 17 O -0.446 6.446 18 C -0.123 4.123 19 C -0.185 4.185 20 C -0.011 4.011 21 O -0.308 6.308 22 C -0.013 4.013 23 C -0.177 4.177 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.219 1.581 -10.817 10.935 hybrid contribution -1.359 0.421 0.071 1.424 sum -1.140 2.002 -10.747 10.991 Atomic orbital electron populations 1.21924 0.94746 1.02124 1.00904 1.20984 0.95935 0.95272 0.96550 1.21783 1.00906 0.95252 1.01435 1.21799 1.01463 0.99658 0.95579 1.21378 0.98663 0.82874 0.96512 1.47856 1.25686 1.07007 1.51062 1.19911 0.82037 0.97117 0.92450 1.21372 0.95647 1.45366 0.95210 0.90183 1.24848 0.98671 0.94370 0.94662 1.69884 1.32773 1.44161 1.05729 0.87006 0.85575 0.79302 0.78891 1.19881 1.20890 1.18854 1.20269 0.84699 0.85951 0.77402 1.90582 1.21871 1.84442 1.47670 1.21245 1.01678 0.92891 0.96466 1.22233 1.00869 0.95168 1.00257 1.22586 0.99186 0.93984 0.85312 1.87869 1.77011 1.51636 1.14314 1.22517 0.97306 0.92167 0.89292 1.22076 1.03069 0.95863 0.96708 0.92673 0.93505 0.92192 0.92710 0.92900 0.92650 0.92984 0.94070 0.92205 0.90535 0.90816 0.94411 0.95645 0.92342 0.89108 0.91612 0.86784 0.93005 0.88813 0.93499 0.89254 0.91484 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 7.20 37.15 0.27 -1.77 16 2 C -0.09 -1.28 0.85 -154.51 -0.13 -1.41 16 3 C -0.14 -1.68 8.47 37.16 0.31 -1.37 16 4 C -0.13 -1.95 7.11 37.16 0.26 -1.68 16 5 C 0.13 2.28 4.58 -4.05 -0.02 2.26 16 6 N -0.59 -11.47 1.96 -175.06 -0.34 -11.81 16 7 C 0.21 4.32 2.67 -5.19 -0.01 4.31 16 8 C -0.54 -13.33 8.06 -34.44 -0.28 -13.61 16 9 H 0.08 2.24 7.69 -52.49 -0.40 1.84 16 10 C 0.08 2.01 5.47 -17.82 -0.10 1.92 16 11 N -0.89 -24.70 13.96 55.43 0.77 -23.93 16 12 Si 0.87 19.10 27.47 -169.99 -4.67 14.43 16 13 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 16 C 0.53 10.46 5.09 -10.98 -0.06 10.41 16 17 O -0.57 -12.11 13.95 5.56 0.08 -12.03 16 18 C -0.10 -1.83 2.04 -91.59 -0.19 -2.01 16 19 C -0.15 -2.74 5.40 -26.59 -0.14 -2.88 16 20 C 0.07 1.08 6.84 37.21 0.25 1.34 16 21 O -0.39 -6.38 10.77 -35.23 -0.38 -6.75 16 22 C 0.06 0.90 6.84 37.21 0.25 1.15 16 23 C -0.14 -2.17 5.11 -26.59 -0.14 -2.31 16 24 H 0.05 0.80 7.92 -51.93 -0.41 0.39 16 25 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.06 0.96 6.31 -51.93 -0.33 0.63 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.05 0.87 6.33 -51.93 -0.33 0.55 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.97 7.74 -51.93 -0.40 0.57 16 33 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 34 H 0.07 1.36 7.43 -51.93 -0.39 0.97 16 35 H 0.04 0.79 5.60 -51.93 -0.29 0.50 16 36 H 0.03 0.53 5.36 -51.93 -0.28 0.25 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.09 1.64 5.87 -51.93 -0.30 1.33 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.11 2.44 5.75 -51.93 -0.30 2.14 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.08 1.38 7.75 -51.93 -0.40 0.98 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -27.78 344.29 -7.13 -34.91 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.07 Total: 5.66 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 0.30 Total: -5.66 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.43 Total: -35.74 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.30 Total: -18.78 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.67 Total: 14.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.78 -7.13 -34.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330522864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.527 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds