Wall clock time and date at job start Tue Mar 31 2020 06:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46697 * 2 1 4 4 C 1.52997 * 109.46840 * 119.99730 * 2 1 3 5 5 C 1.53003 * 109.47374 * 65.00555 * 4 2 1 6 6 N 1.46500 * 109.47297 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00172 * 270.00147 * 6 5 4 8 8 C 1.50704 * 109.46856 * 264.61845 * 7 6 5 9 9 H 1.07999 * 120.00008 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00015 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99656 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 119.99991 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47511 * 60.00210 * 12 10 8 14 14 H 1.48506 * 109.47064 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47348 * 299.99640 * 12 10 8 16 16 C 1.34780 * 119.99356 * 90.00055 * 6 5 4 17 17 O 1.21280 * 120.00622 * 5.35336 * 16 6 5 18 18 C 1.50708 * 119.99521 * 185.35641 * 16 6 5 19 19 C 1.53175 * 109.54118 * 210.51897 * 18 16 6 20 20 C 1.53091 * 109.16159 * 183.14862 * 19 18 16 21 21 O 1.42905 * 109.41187 * 57.61451 * 20 19 18 22 22 C 1.42901 * 114.09779 * 298.83902 * 21 20 19 23 23 C 1.53092 * 109.41615 * 61.15649 * 22 21 20 24 24 H 1.09007 * 109.46613 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47007 * 299.99539 * 1 2 3 26 26 H 1.08993 * 109.47018 * 60.00178 * 1 2 3 27 27 H 1.08995 * 109.46949 * 239.99919 * 2 1 3 28 28 H 1.08998 * 109.46982 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47627 * 299.99747 * 3 2 1 30 30 H 1.09004 * 109.47327 * 60.00145 * 3 2 1 31 31 H 1.08996 * 109.47517 * 304.99846 * 4 2 1 32 32 H 1.09012 * 109.46717 * 185.00175 * 4 2 1 33 33 H 1.09004 * 109.46771 * 59.99093 * 5 4 2 34 34 H 1.08997 * 109.46497 * 299.99811 * 5 4 2 35 35 H 1.08999 * 109.46975 * 24.61727 * 7 6 5 36 36 H 1.08999 * 109.47117 * 144.62363 * 7 6 5 37 37 H 0.96997 * 119.99652 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.61410 * 330.74313 * 18 16 6 39 39 H 1.08996 * 109.52345 * 303.06319 * 19 18 16 40 40 H 1.09008 * 109.51852 * 63.25133 * 19 18 16 41 41 H 1.08994 * 109.48402 * 297.63030 * 20 19 18 42 42 H 1.09002 * 109.47611 * 177.59176 * 20 19 18 43 43 H 1.09005 * 109.47854 * 301.17987 * 22 21 20 44 44 H 1.08994 * 109.49071 * 181.14938 * 22 21 20 45 45 H 1.09001 * 109.52449 * 182.48409 * 23 22 21 46 46 H 1.09005 * 109.52316 * 62.29745 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1880 6 7 2.1241 -2.8861 2.3840 7 6 3.4524 -3.5040 2.3816 8 6 3.3257 -4.9659 2.0381 9 1 2.3531 -5.3920 1.8409 10 6 4.4516 -5.7592 1.9746 11 7 5.6360 -5.2402 2.2142 12 14 4.2946 -7.5711 1.5481 13 1 3.6804 -7.7118 0.2035 14 1 5.6411 -8.1975 1.5458 15 1 3.4377 -8.2446 2.5568 16 6 1.3517 -2.9530 3.4864 17 8 0.2163 -2.5277 3.4582 18 6 1.8989 -3.5564 4.7544 19 6 0.7596 -4.2049 5.5465 20 6 1.3108 -4.7455 6.8685 21 8 1.9201 -3.6799 7.6002 22 6 3.0224 -3.0666 6.9287 23 6 2.5400 -2.4587 5.6090 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 3.1264 -0.6442 1.2952 33 1 2.0700 -2.6549 0.3002 34 1 0.5490 -2.2723 1.1421 35 1 4.0816 -3.0100 1.6411 36 1 3.9031 -3.4005 3.3686 37 1 6.4281 -5.7983 2.1692 38 1 2.6468 -4.3100 4.5079 39 1 -0.0116 -3.4620 5.7499 40 1 0.3336 -5.0243 4.9673 41 1 2.0530 -5.5172 6.6644 42 1 0.4963 -5.1702 7.4553 43 1 3.7870 -3.8165 6.7253 44 1 3.4412 -2.2821 7.5587 45 1 3.3873 -2.0290 5.0746 46 1 1.8047 -1.6804 5.8137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330590778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:43 Heat of formation + Delta-G solvation = -118.255782 kcal Electronic energy + Delta-G solvation = -23902.610526 eV Core-core repulsion = 20597.929794 eV Total energy + Delta-G solvation = -3304.680733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82866 -38.24595 -36.53302 -34.74691 -33.21288 -32.57776 -30.81599 -29.29355 -27.04212 -26.99092 -25.48938 -23.34676 -23.08470 -22.70419 -20.15722 -19.74460 -18.19770 -16.79183 -16.25944 -15.99032 -15.71901 -15.16807 -14.95020 -14.52139 -14.45362 -14.38274 -13.68264 -13.51082 -13.25715 -12.93928 -12.68212 -12.36322 -12.25357 -12.11051 -11.97118 -11.71655 -11.48088 -11.16750 -11.04889 -10.98043 -10.93468 -10.73665 -10.68610 -10.49930 -10.33726 -10.28088 -10.10198 -9.92606 -9.77580 -9.48423 -8.81930 -8.57699 -7.69774 -6.22926 -4.30848 3.20537 3.25926 3.27824 3.40403 3.90756 4.12465 4.29799 5.00751 5.09075 5.10147 5.12002 5.13541 5.16839 5.25415 5.31301 5.55229 5.59946 5.68828 5.71617 5.82212 5.85022 5.88740 5.90374 5.93416 5.99850 6.01792 6.11107 6.15233 6.17137 6.25842 6.29713 6.34611 6.38302 6.45330 6.62253 6.65685 6.71739 6.78693 7.14904 7.41865 7.54623 7.73265 8.02118 8.33968 8.75880 9.04428 9.37690 10.83354 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.007087 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.831108 B = 3949.984240 C = 5924.373076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.117 3.883 6 N -0.596 5.596 7 C 0.238 3.762 8 C -0.540 4.540 9 H 0.060 0.940 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.895 3.105 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.526 3.474 17 O -0.575 6.575 18 C -0.112 4.112 19 C -0.135 4.135 20 C 0.062 3.938 21 O -0.388 6.388 22 C 0.064 3.936 23 C -0.138 4.138 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 6.639 2.246 8.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.007 4.007 6 N -0.326 5.326 7 C 0.118 3.882 8 C -0.579 4.579 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.723 3.277 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.314 3.686 17 O -0.456 6.456 18 C -0.133 4.133 19 C -0.173 4.173 20 C -0.014 4.014 21 O -0.307 6.307 22 C -0.012 4.012 23 C -0.177 4.177 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.831 6.863 2.398 8.729 hybrid contribution 0.310 -1.190 -0.741 1.436 sum -4.520 5.672 1.658 7.440 Atomic orbital electron populations 1.21873 0.95358 1.02066 1.01116 1.21051 0.95841 0.95907 0.98510 1.21821 1.00897 0.96195 1.01276 1.21996 1.01003 0.95988 0.97550 1.21360 0.99970 0.90969 0.88358 1.48236 1.19437 1.53223 1.11655 1.19419 0.77691 0.92655 0.98412 1.21485 0.93602 0.93962 1.48806 0.92208 1.24931 0.95048 0.98878 0.94834 1.69909 0.98033 1.36441 1.48451 0.86593 0.77295 0.84597 0.79248 1.20123 1.21082 1.20040 1.20337 0.84981 0.78182 0.85084 1.90564 1.18988 1.50845 1.85189 1.21361 0.99595 0.99403 0.92962 1.21998 0.98043 1.01280 0.95961 1.22590 0.97167 0.89075 0.92609 1.87861 1.47912 1.50449 1.44441 1.22553 0.88513 0.97078 0.93106 1.22047 1.01281 0.98045 0.96281 0.92268 0.92800 0.93298 0.91199 0.92773 0.93053 0.92927 0.92135 0.91871 0.90833 0.90786 0.94629 0.94504 0.92428 0.86758 0.90456 0.90894 0.92894 0.89094 0.92598 0.89016 0.90440 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 2 C -0.09 -1.23 2.92 -90.62 -0.26 -1.50 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 4 C -0.13 -2.01 5.01 -26.73 -0.13 -2.14 16 5 C 0.12 2.16 5.18 -4.04 -0.02 2.14 16 6 N -0.60 -12.46 2.47 -175.05 -0.43 -12.90 16 7 C 0.24 5.52 4.79 -5.19 -0.02 5.49 16 8 C -0.54 -13.79 8.74 -34.44 -0.30 -14.09 16 9 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -23.93 13.29 55.43 0.74 -23.20 16 12 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 C 0.53 11.02 6.68 -10.98 -0.07 10.95 16 17 O -0.57 -13.07 15.68 5.56 0.09 -12.98 16 18 C -0.11 -2.09 1.80 -91.59 -0.16 -2.25 16 19 C -0.13 -2.27 5.08 -26.59 -0.14 -2.41 16 20 C 0.06 0.92 6.84 37.20 0.25 1.17 16 21 O -0.39 -6.11 10.77 -35.23 -0.38 -6.49 16 22 C 0.06 0.94 6.84 37.20 0.25 1.19 16 23 C -0.14 -2.25 5.32 -26.59 -0.14 -2.39 16 24 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 34 H 0.07 1.40 5.78 -51.93 -0.30 1.10 16 35 H 0.04 0.87 8.03 -51.93 -0.42 0.45 16 36 H 0.04 0.87 6.04 -51.93 -0.31 0.56 16 37 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.11 2.35 5.98 -51.93 -0.31 2.04 16 39 H 0.08 1.36 7.75 -51.93 -0.40 0.96 16 40 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.25 7.66 -51.93 -0.40 0.85 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -28.21 361.85 -8.10 -36.30 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.37 Total: 3.63 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -0.17 Total: -5.06 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.30 Total: -36.09 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.29 Total: -19.47 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.21 -8.10 -36.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330590778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.955 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds