Wall clock time and date at job start Tue Mar 31 2020 06:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47347 * 2 1 4 4 C 1.53004 * 109.47103 * 119.99971 * 2 1 3 5 5 C 1.53006 * 109.47358 * 64.99865 * 4 2 1 6 6 H 1.08997 * 109.48886 * 305.03626 * 5 4 2 7 7 O 1.42909 * 109.47603 * 65.05790 * 5 4 2 8 8 C 1.42907 * 114.09315 * 181.14173 * 7 5 4 9 9 C 1.53083 * 109.41396 * 298.84269 * 8 7 5 10 10 C 1.53171 * 109.16612 * 57.61076 * 9 8 7 11 11 C 1.53090 * 109.48157 * 185.00013 * 5 4 2 12 12 H 1.08996 * 109.52244 * 62.43994 * 11 5 4 13 13 N 1.46499 * 109.52075 * 302.31637 * 11 5 4 14 14 C 1.34774 * 119.99899 * 155.00192 * 13 11 5 15 15 O 1.21288 * 120.00049 * 359.97438 * 14 13 11 16 16 C 1.50699 * 120.00325 * 179.97438 * 14 13 11 17 17 C 1.53001 * 109.47500 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47168 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99792 * 179.72330 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47088 * 89.99795 * 22 20 18 24 24 H 1.48495 * 109.47293 * 209.99997 * 22 20 18 25 25 H 1.48507 * 109.47015 * 329.99955 * 22 20 18 26 26 H 1.09002 * 109.46895 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46995 * 299.99910 * 1 2 3 28 28 H 1.08994 * 109.46572 * 60.00278 * 1 2 3 29 29 H 1.09006 * 109.47361 * 239.99802 * 2 1 3 30 30 H 1.08996 * 109.46991 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46615 * 299.99839 * 3 2 1 32 32 H 1.09000 * 109.46658 * 59.99793 * 3 2 1 33 33 H 1.08994 * 109.46999 * 304.99876 * 4 2 1 34 34 H 1.09006 * 109.47134 * 185.00211 * 4 2 1 35 35 H 1.08997 * 109.47601 * 58.82529 * 8 7 5 36 36 H 1.08993 * 109.47538 * 178.84629 * 8 7 5 37 37 H 1.09005 * 109.52319 * 177.52024 * 9 8 7 38 38 H 1.09001 * 109.52371 * 297.70263 * 9 8 7 39 39 H 1.09002 * 109.54779 * 183.14912 * 10 9 8 40 40 H 1.09003 * 109.54849 * 62.88509 * 10 9 8 41 41 H 0.97005 * 120.00261 * 334.99955 * 13 11 5 42 42 H 1.09000 * 109.46737 * 59.99782 * 16 14 13 43 43 H 1.09002 * 109.46890 * 299.99893 * 16 14 13 44 44 H 1.08998 * 109.46837 * 60.00023 * 17 16 14 45 45 H 1.09002 * 109.46926 * 299.99827 * 17 16 14 46 46 H 0.97000 * 119.99468 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 -2.1955 1.1881 6 1 0.5564 -2.2711 1.0522 7 8 2.2990 -2.8268 0.0912 8 6 1.9699 -4.2076 -0.0735 9 6 2.3835 -4.9823 1.1804 10 6 1.6818 -4.3769 2.3999 11 6 2.0355 -2.8895 2.4926 12 1 1.4974 -2.4373 3.3257 13 7 3.4777 -2.7414 2.7034 14 6 3.9861 -2.8006 3.9501 15 8 3.2496 -2.9760 4.8977 16 6 5.4697 -2.6489 4.1670 17 6 5.7803 -2.7552 5.6613 18 6 7.2638 -2.6028 5.8781 19 1 7.9196 -2.4463 5.0345 20 6 7.7839 -2.6633 7.1537 21 7 9.0792 -2.5358 7.3424 22 14 6.6497 -2.9348 8.6129 23 1 6.5112 -4.3912 8.8678 24 1 7.2213 -2.2743 9.8137 25 1 5.3150 -2.3549 8.3170 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6443 1.2952 35 1 0.8954 -4.3094 -0.2257 36 1 2.4991 -4.6067 -0.9387 37 1 2.0935 -6.0278 1.0749 38 1 3.4636 -4.9145 1.3107 39 1 2.0148 -4.8879 3.3033 40 1 0.6028 -4.4891 2.2928 41 1 4.0667 -2.6007 1.9456 42 1 5.7933 -1.6762 3.7965 43 1 5.9978 -3.4365 3.6295 44 1 5.4567 -3.7281 6.0313 45 1 5.2521 -1.9678 6.1991 46 1 9.4450 -2.5780 8.2397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330879261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:16 Heat of formation + Delta-G solvation = -120.715163 kcal Electronic energy + Delta-G solvation = -23368.804952 eV Core-core repulsion = 20064.017572 eV Total energy + Delta-G solvation = -3304.787379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48623 -38.60923 -36.42276 -34.76412 -33.44131 -32.71304 -31.44334 -30.49771 -27.43528 -27.34559 -26.02686 -24.34110 -22.67524 -21.68725 -20.09833 -19.91996 -19.43620 -17.34000 -16.70008 -16.34276 -15.91893 -15.60340 -15.19159 -14.98513 -14.51088 -14.36891 -14.05376 -13.87396 -13.47860 -13.12179 -12.87708 -12.55862 -12.50791 -12.47143 -12.35013 -12.26079 -12.00308 -11.51873 -11.39210 -11.32423 -10.95527 -10.86066 -10.82914 -10.78098 -10.35738 -10.14063 -10.01797 -9.76684 -9.69133 -9.19648 -9.12119 -8.75894 -8.48869 -6.01328 -3.99740 3.16884 3.35406 3.38862 3.45355 3.56454 3.70555 4.31488 4.52396 4.57955 4.71598 4.72973 4.76268 4.84833 4.88585 5.05162 5.15301 5.26691 5.34199 5.38192 5.41453 5.43870 5.52510 5.54470 5.57558 5.64612 5.74786 5.77663 5.81167 5.84446 6.00017 6.03551 6.07619 6.12354 6.14274 6.14517 6.24054 6.69096 6.74566 7.02074 7.39015 7.46304 7.80149 7.87938 8.52721 8.71939 9.02266 9.61882 11.11584 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020059 B = 0.003826 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.568517 B = 7316.481595 C = 7956.888952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.106 4.106 5 C 0.084 3.916 6 H 0.071 0.929 7 O -0.374 6.374 8 C 0.062 3.938 9 C -0.155 4.155 10 C -0.134 4.134 11 C 0.116 3.884 12 H 0.093 0.907 13 N -0.727 5.727 14 C 0.511 3.489 15 O -0.544 6.544 16 C -0.122 4.122 17 C 0.003 3.997 18 C -0.524 4.524 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.904 5.904 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.261 1.261 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.402 0.598 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.018 0.982 45 H 0.023 0.977 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.559 1.075 -18.674 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.144 4.144 5 C 0.026 3.974 6 H 0.089 0.911 7 O -0.293 6.293 8 C -0.015 4.015 9 C -0.193 4.193 10 C -0.173 4.173 11 C 0.011 3.989 12 H 0.111 0.889 13 N -0.381 5.381 14 C 0.299 3.701 15 O -0.420 6.420 16 C -0.162 4.162 17 C -0.035 4.035 18 C -0.562 4.562 19 H 0.090 0.910 20 C -0.133 4.133 21 N -0.543 5.543 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.185 1.185 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.237 0.763 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.036 0.964 45 H 0.041 0.959 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.826 1.056 -17.952 26.035 hybrid contribution -0.369 -0.390 0.659 0.850 sum -19.195 0.667 -17.293 25.844 Atomic orbital electron populations 1.21909 0.95654 1.01489 1.01606 1.21077 0.95444 0.96053 0.98740 1.21844 1.01249 0.95915 1.01536 1.21669 1.02561 0.91770 0.98386 1.22479 0.96504 0.92999 0.85395 0.91145 1.87933 1.68965 1.23021 1.49358 1.22573 0.99528 0.81678 0.97706 1.22148 1.02157 0.99729 0.95229 1.21984 1.00088 0.96084 0.99152 1.21481 0.83675 0.95627 0.98160 0.88936 1.46095 1.07350 1.75475 1.09194 1.21525 0.92204 0.74545 0.81793 1.90640 1.61675 1.48388 1.41296 1.21657 0.88856 1.03138 1.02565 1.19352 0.97085 0.97464 0.89623 1.21128 0.90767 1.49952 0.94358 0.90954 1.24977 0.94884 0.94449 0.98958 1.69917 1.11428 1.50835 1.22119 0.86792 0.81939 0.78771 0.82033 1.20287 1.21457 1.18549 0.92781 0.92780 0.92868 0.90383 0.92491 0.92877 0.92784 0.90459 0.90563 0.93440 0.88901 0.91055 0.90660 0.90626 0.91430 0.76340 0.89675 0.89770 0.96382 0.95881 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.96 37.16 0.33 -0.77 16 2 C -0.09 -0.79 2.87 -90.62 -0.26 -1.05 16 3 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 4 C -0.11 -1.01 4.12 -26.73 -0.11 -1.12 16 5 C 0.08 0.81 2.20 -26.68 -0.06 0.75 16 6 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 7 O -0.37 -3.69 9.48 -35.23 -0.33 -4.03 16 8 C 0.06 0.51 6.84 37.20 0.25 0.77 16 9 C -0.15 -1.46 5.97 -26.60 -0.16 -1.62 16 10 C -0.13 -1.49 5.69 -26.55 -0.15 -1.64 16 11 C 0.12 1.38 2.30 -67.79 -0.16 1.22 16 12 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 13 N -0.73 -9.82 3.80 -53.67 -0.20 -10.03 16 14 C 0.51 9.27 7.80 -10.99 -0.09 9.18 16 15 O -0.54 -11.92 15.64 5.55 0.09 -11.84 16 16 C -0.12 -2.40 5.64 -27.88 -0.16 -2.56 16 17 C 0.00 0.07 3.33 -27.89 -0.09 -0.03 16 18 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 19 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 22 Si 0.88 22.80 27.47 -169.99 -4.67 18.13 16 23 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 26 H 0.05 0.39 6.46 -51.93 -0.34 0.05 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.79 7.47 -51.93 -0.39 0.40 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.81 7.76 -51.93 -0.40 0.41 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.40 4.79 7.95 -40.82 -0.32 4.47 16 42 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 45 H 0.02 0.61 7.16 -51.93 -0.37 0.23 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -33.12 359.23 -8.08 -41.21 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.42 Total: -0.13 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.73 Total: -11.25 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.57 Total: -37.50 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.25 Total: -15.87 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.67 Total: 18.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.12 -8.08 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330879261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.508 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds