Wall clock time and date at job start Tue Mar 31 2020 06:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47267 * 2 1 4 4 C 1.53006 * 109.47228 * 120.00459 * 2 1 3 5 5 C 1.52996 * 109.46813 * 174.15806 * 4 2 1 6 6 H 1.08999 * 109.49474 * 56.65147 * 5 4 2 7 7 O 1.42902 * 109.47903 * 296.61440 * 5 4 2 8 8 C 1.42912 * 114.09553 * 178.86122 * 7 5 4 9 9 C 1.53090 * 109.40936 * 61.16456 * 8 7 5 10 10 C 1.53177 * 109.16559 * 302.38528 * 9 8 7 11 11 C 1.53100 * 109.47515 * 176.67970 * 5 4 2 12 12 H 1.08997 * 109.52535 * 57.68036 * 11 5 4 13 13 N 1.46500 * 109.52157 * 297.55372 * 11 5 4 14 14 C 1.34776 * 119.99810 * 155.12101 * 13 11 5 15 15 O 1.21281 * 120.00003 * 0.02562 * 14 13 11 16 16 C 1.50707 * 120.00008 * 179.97438 * 14 13 11 17 17 C 1.53002 * 109.47106 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.46862 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00063 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99649 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99791 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00147 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47294 * 89.99866 * 22 20 18 24 24 H 1.48507 * 109.47081 * 210.00154 * 22 20 18 25 25 H 1.48503 * 109.47173 * 330.00051 * 22 20 18 26 26 H 1.08995 * 109.47143 * 176.72481 * 1 2 3 27 27 H 1.08997 * 109.46739 * 296.72783 * 1 2 3 28 28 H 1.09001 * 109.47151 * 56.72538 * 1 2 3 29 29 H 1.09000 * 109.46864 * 240.00128 * 2 1 3 30 30 H 1.09004 * 109.47098 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47268 * 299.99936 * 3 2 1 32 32 H 1.09000 * 109.47074 * 60.00256 * 3 2 1 33 33 H 1.08998 * 109.47028 * 54.15062 * 4 2 1 34 34 H 1.09006 * 109.46482 * 294.15648 * 4 2 1 35 35 H 1.08995 * 109.47934 * 181.14164 * 8 7 5 36 36 H 1.08992 * 109.47869 * 301.18218 * 8 7 5 37 37 H 1.09000 * 109.52853 * 62.29973 * 9 8 7 38 38 H 1.09010 * 109.51715 * 182.48496 * 9 8 7 39 39 H 1.08998 * 109.54624 * 297.11710 * 10 9 8 40 40 H 1.08999 * 109.54519 * 176.84815 * 10 9 8 41 41 H 0.97004 * 120.00321 * 335.13423 * 13 11 5 42 42 H 1.08998 * 109.47011 * 300.01238 * 16 14 13 43 43 H 1.08998 * 109.46736 * 60.00814 * 16 14 13 44 44 H 1.08998 * 109.47148 * 300.00713 * 17 16 14 45 45 H 1.09006 * 109.46830 * 60.00325 * 17 16 14 46 46 H 0.97002 * 119.99830 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5630 -0.8497 1.1779 6 1 4.0064 0.1395 1.0642 7 8 3.9207 -1.6639 0.0593 8 6 5.3294 -1.8284 -0.1159 9 6 5.9189 -2.5149 1.1190 10 6 5.5991 -1.6770 2.3608 11 6 4.0815 -1.4969 2.4648 12 1 3.6077 -2.4692 2.6001 13 7 3.7666 -0.6356 3.6072 14 6 3.6538 -1.1669 4.8407 15 8 3.8134 -2.3579 5.0050 16 6 3.3304 -0.2808 6.0161 17 6 3.2608 -1.1270 7.2889 18 6 2.9369 -0.2410 8.4641 19 1 2.7944 0.8195 8.3178 20 6 2.8224 -0.7843 9.7261 21 7 2.5392 -0.0112 10.7516 22 14 3.0695 -2.6185 9.9793 23 1 4.5016 -2.8906 10.2625 24 1 2.2427 -3.0759 11.1250 25 1 2.6606 -3.3472 8.7516 26 1 -0.3633 -1.0259 -0.0587 27 1 -0.3633 0.4622 0.9179 28 1 -0.3633 0.5638 -0.8592 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.5937 -1.7143 1.3030 34 1 1.7646 -0.1507 2.1362 35 1 5.5170 -2.4419 -0.9970 36 1 5.7959 -0.8520 -0.2464 37 1 5.4823 -3.5077 1.2272 38 1 6.9997 -2.6015 1.0065 39 1 6.0771 -0.7012 2.2753 40 1 5.9674 -2.1881 3.2503 41 1 3.6392 0.3170 3.4759 42 1 4.1073 0.4760 6.1252 43 1 2.3695 0.2063 5.8503 44 1 2.4842 -1.8840 7.1799 45 1 4.2220 -1.6139 7.4545 46 1 2.4582 -0.3935 11.6394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330879262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:19 Heat of formation + Delta-G solvation = -121.315826 kcal Electronic energy + Delta-G solvation = -23196.348639 eV Core-core repulsion = 19891.535213 eV Total energy + Delta-G solvation = -3304.813426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38250 -38.76527 -36.42719 -34.98059 -33.47618 -32.87012 -31.43814 -30.40643 -27.44326 -27.31851 -26.09197 -24.25271 -22.62124 -21.27050 -20.54832 -20.08188 -19.66179 -17.37124 -16.66155 -16.52575 -15.87705 -15.62830 -15.15605 -14.84203 -14.71092 -14.32302 -14.07910 -13.75467 -13.55994 -13.31426 -13.01245 -12.57171 -12.55051 -12.49678 -12.42178 -12.10534 -11.70465 -11.57328 -11.42260 -11.27209 -11.09701 -10.95505 -10.87001 -10.79210 -10.41147 -10.17000 -10.04508 -9.78608 -9.71666 -9.23465 -9.15919 -8.83936 -8.50697 -6.03128 -4.01851 3.10932 3.22625 3.37848 3.44490 3.55573 3.69788 4.29352 4.50955 4.59883 4.67789 4.72681 4.74706 4.84062 4.88062 4.94424 5.11884 5.27953 5.32485 5.34784 5.43533 5.45634 5.51543 5.55189 5.58062 5.63885 5.71396 5.76537 5.78705 5.84413 5.98914 6.02650 6.07855 6.08920 6.10954 6.15637 6.25238 6.57549 6.69139 6.99591 7.36303 7.43518 7.74311 7.79850 8.49979 8.65342 8.99955 9.60053 11.09725 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.003789 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.977671 B = 7387.154366 C = 8306.605181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.108 4.108 5 C 0.087 3.913 6 H 0.064 0.936 7 O -0.371 6.371 8 C 0.059 3.941 9 C -0.153 4.153 10 C -0.134 4.134 11 C 0.117 3.883 12 H 0.093 0.907 13 N -0.734 5.734 14 C 0.512 3.488 15 O -0.538 6.538 16 C -0.122 4.122 17 C 0.002 3.998 18 C -0.525 4.525 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.904 5.904 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.261 1.261 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.397 0.603 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.023 0.977 45 H 0.018 0.982 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 0.945 -25.817 25.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.145 4.145 5 C 0.029 3.971 6 H 0.082 0.918 7 O -0.289 6.289 8 C -0.017 4.017 9 C -0.191 4.191 10 C -0.173 4.173 11 C 0.011 3.989 12 H 0.111 0.889 13 N -0.388 5.388 14 C 0.301 3.699 15 O -0.414 6.414 16 C -0.162 4.162 17 C -0.036 4.036 18 C -0.563 4.563 19 H 0.091 0.909 20 C -0.132 4.132 21 N -0.543 5.543 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.185 1.185 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.231 0.769 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.042 0.958 45 H 0.037 0.963 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.720 -0.023 -25.619 25.763 hybrid contribution 0.415 -0.337 0.426 0.683 sum 3.135 -0.360 -25.193 25.390 Atomic orbital electron populations 1.21845 0.95259 1.01729 1.01716 1.21067 0.95544 0.96017 0.98664 1.21912 1.00886 0.96136 1.01769 1.21716 0.92379 1.01874 0.98579 1.22346 0.96196 0.93383 0.85200 0.91807 1.87964 1.22682 1.71186 1.47032 1.22604 0.81600 0.99703 0.97830 1.22187 1.01500 1.00438 0.95023 1.22018 0.96050 1.00463 0.98774 1.21498 0.95254 0.96319 0.85820 0.88867 1.46123 1.74237 1.11286 1.07199 1.21542 0.74944 0.89513 0.83931 1.90653 1.49270 1.16576 1.84887 1.21673 1.02627 0.98828 0.93076 1.19365 0.97538 0.95474 0.91231 1.21114 1.48458 0.95901 0.90814 0.90947 1.24967 0.94362 0.97942 0.95937 1.69913 1.49204 1.35513 0.99626 0.86801 0.78460 0.86207 0.78116 1.20262 1.21428 1.18536 0.92718 0.92605 0.92837 0.90480 0.92792 0.92851 0.92564 0.90938 0.90061 0.88790 0.93228 0.90778 0.90694 0.91757 0.90600 0.76855 0.89661 0.89592 0.95834 0.96328 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.16 0.34 -0.86 16 2 C -0.09 -0.81 2.86 -90.62 -0.26 -1.07 16 3 C -0.15 -1.14 8.97 37.15 0.33 -0.80 16 4 C -0.11 -1.06 4.30 -26.73 -0.11 -1.17 16 5 C 0.09 0.86 2.06 -26.68 -0.06 0.81 16 6 H 0.06 0.57 6.45 -51.93 -0.33 0.23 16 7 O -0.37 -3.88 9.78 -35.23 -0.34 -4.23 16 8 C 0.06 0.49 6.84 37.20 0.25 0.75 16 9 C -0.15 -1.41 6.14 -26.59 -0.16 -1.57 16 10 C -0.13 -1.52 5.61 -26.55 -0.15 -1.67 16 11 C 0.12 1.42 2.07 -67.79 -0.14 1.28 16 12 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 13 N -0.73 -9.50 4.40 -53.66 -0.24 -9.73 16 14 C 0.51 9.13 7.80 -10.98 -0.09 9.05 16 15 O -0.54 -11.81 15.65 5.56 0.09 -11.72 16 16 C -0.12 -2.33 5.64 -27.88 -0.16 -2.49 16 17 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 18 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 19 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 22 Si 0.88 22.68 27.47 -169.99 -4.67 18.01 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.72 7.62 -51.93 -0.40 0.32 16 30 H 0.05 0.40 6.52 -51.93 -0.34 0.06 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.79 7.52 -51.93 -0.39 0.40 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.40 4.00 8.53 -40.82 -0.35 3.66 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 45 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -33.40 361.13 -8.13 -41.54 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -8.47 Total: -0.83 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.72 Total: -11.20 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.54 Total: -37.01 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.26 Total: -15.95 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.67 Total: 18.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.40 -8.13 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330879262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.778 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds