Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46916 * 2 1 4 4 C 1.53001 * 109.47134 * 119.99418 * 2 1 3 5 5 C 1.53004 * 109.46638 * 65.00404 * 4 2 1 6 6 H 1.09000 * 109.49194 * 304.96541 * 5 4 2 7 7 C 1.53097 * 109.47989 * 184.94368 * 5 4 2 8 8 C 1.53178 * 109.16320 * 182.40692 * 7 5 4 9 9 H 1.09000 * 109.54126 * 297.02411 * 8 7 5 10 10 N 1.46498 * 109.54224 * 176.84837 * 8 7 5 11 11 C 1.34777 * 120.00128 * 155.00526 * 10 8 7 12 12 O 1.21280 * 119.99874 * 359.97438 * 11 10 8 13 13 C 1.50701 * 120.00250 * 180.02562 * 11 10 8 14 14 C 1.52997 * 109.47005 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.46713 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99931 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00141 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47165 * 89.99992 * 19 17 15 21 21 H 1.48495 * 109.46767 * 210.00342 * 19 17 15 22 22 H 1.48500 * 109.46945 * 329.99866 * 19 17 15 23 23 C 1.53207 * 109.03992 * 56.98185 * 8 7 5 24 24 C 1.53092 * 109.14859 * 303.02293 * 23 8 7 25 25 O 1.42898 * 109.48206 * 65.00072 * 5 4 2 26 26 H 1.08999 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47250 * 300.00348 * 1 2 3 28 28 H 1.09001 * 109.46952 * 60.00346 * 1 2 3 29 29 H 1.08996 * 109.47767 * 239.99662 * 2 1 3 30 30 H 1.08997 * 109.46800 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47027 * 299.99608 * 3 2 1 32 32 H 1.09003 * 109.47009 * 60.00161 * 3 2 1 33 33 H 1.09001 * 109.47510 * 305.00757 * 4 2 1 34 34 H 1.08999 * 109.47626 * 184.99782 * 4 2 1 35 35 H 1.09003 * 109.51867 * 302.31556 * 7 5 4 36 36 H 1.08997 * 109.52106 * 62.49955 * 7 5 4 37 37 H 0.97004 * 120.00366 * 334.99878 * 10 8 7 38 38 H 1.09005 * 109.47006 * 299.99873 * 13 11 10 39 39 H 1.08998 * 109.46753 * 59.99424 * 13 11 10 40 40 H 1.08999 * 109.47124 * 299.99337 * 14 13 11 41 41 H 1.08996 * 109.47135 * 59.99926 * 14 13 11 42 42 H 0.97002 * 119.99518 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.53319 * 183.11811 * 23 8 7 44 44 H 1.08992 * 109.51748 * 62.92028 * 23 8 7 45 45 H 1.09002 * 109.48343 * 297.61643 * 24 23 8 46 46 H 1.08999 * 109.47546 * 177.59237 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6353 -2.1954 1.1880 6 1 0.5563 -2.2710 1.0533 7 6 2.0368 -2.8897 2.4921 8 6 1.6830 -4.3772 2.3994 9 1 0.6038 -4.4894 2.2948 10 7 2.1318 -5.0642 3.6129 11 6 1.5282 -6.2038 4.0046 12 8 0.6130 -6.6603 3.3526 13 6 1.9895 -6.9102 5.2533 14 6 1.1442 -8.1669 5.4701 15 6 1.6060 -8.8737 6.7184 16 1 2.4206 -8.4670 7.2993 17 6 0.9878 -10.0390 7.1196 18 7 -0.0045 -10.5340 6.4126 19 14 1.5597 -10.9147 8.6674 20 1 0.7996 -10.4022 9.8356 21 1 1.3250 -12.3741 8.5257 22 1 3.0091 -10.6639 8.8711 23 6 2.3838 -4.9825 1.1789 24 6 1.9688 -4.2071 -0.0743 25 8 2.2980 -2.8263 0.0904 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2953 35 1 3.1100 -2.7795 2.6479 36 1 1.4985 -2.4385 3.3256 37 1 2.8636 -4.6990 4.1346 38 1 3.0373 -7.1908 5.1459 39 1 1.8774 -6.2451 6.1094 40 1 0.0965 -7.8860 5.5777 41 1 1.2559 -8.8321 4.6139 42 1 -0.4392 -11.3540 6.6946 43 1 2.0936 -6.0278 1.0732 44 1 3.4639 -4.9145 1.3082 45 1 0.8941 -4.3091 -0.2256 46 1 2.4973 -4.6061 -0.9401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330879853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = -126.064577 kcal Electronic energy + Delta-G solvation = -22510.031090 eV Core-core repulsion = 19205.011743 eV Total energy + Delta-G solvation = -3305.019347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17518 -38.79467 -36.48210 -35.03333 -33.44472 -31.91296 -31.64971 -30.57881 -27.50817 -27.31006 -25.78163 -24.01306 -22.83142 -21.44329 -20.55749 -20.09892 -19.52849 -16.92078 -16.60654 -16.42211 -15.71833 -15.49592 -15.18689 -14.99195 -14.63394 -14.43856 -14.27070 -13.89328 -13.40481 -13.26433 -13.03694 -12.55162 -12.43292 -12.25648 -12.16735 -12.13581 -11.63082 -11.59198 -11.25764 -11.16226 -10.99539 -10.92628 -10.89481 -10.85124 -10.61004 -10.33760 -9.95836 -9.81080 -9.65968 -9.15882 -8.96697 -8.79243 -8.32210 -5.96341 -4.00722 3.24134 3.33043 3.38591 3.41087 3.46471 3.60140 4.34958 4.47227 4.56120 4.65207 4.68953 4.78889 4.90318 4.95890 5.06657 5.16802 5.27439 5.33323 5.35048 5.38543 5.46026 5.46793 5.52462 5.56476 5.61855 5.67195 5.70078 5.79302 5.83733 5.93544 5.98730 6.06495 6.15796 6.17217 6.23058 6.25064 6.74861 6.89503 7.06976 7.74128 7.86077 7.89461 8.06982 8.38615 8.78255 9.07931 9.62766 11.14606 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.041931 B = 0.002564 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.605056 B =10916.300175 C =11092.952912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.106 4.106 5 C 0.093 3.907 6 H 0.063 0.937 7 C -0.157 4.157 8 C 0.144 3.856 9 H 0.085 0.915 10 N -0.740 5.740 11 C 0.510 3.490 12 O -0.535 6.535 13 C -0.130 4.130 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.167 4.167 24 C 0.065 3.935 25 O -0.378 6.378 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.397 0.603 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.462 22.595 -12.668 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.143 4.143 5 C 0.034 3.966 6 H 0.081 0.919 7 C -0.195 4.195 8 C 0.039 3.961 9 H 0.103 0.897 10 N -0.393 5.393 11 C 0.299 3.701 12 O -0.410 6.410 13 C -0.170 4.170 14 C 0.000 4.000 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.206 4.206 24 C -0.012 4.012 25 O -0.297 6.297 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.230 0.770 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.776 22.186 -13.256 26.282 hybrid contribution 0.474 -0.606 1.327 1.534 sum 5.249 21.580 -11.929 25.210 Atomic orbital electron populations 1.21915 0.95437 1.01838 1.01593 1.21079 0.95671 0.95850 0.98876 1.21844 1.00945 0.96070 1.01584 1.21671 1.01937 0.92278 0.98411 1.22126 0.96404 0.92516 0.85515 0.91894 1.22523 1.02964 0.95058 0.98973 1.20841 0.99831 0.90465 0.84964 0.89666 1.46275 1.38780 1.26884 1.27345 1.21586 0.81704 0.79543 0.87280 1.90660 1.29144 1.64993 1.56207 1.21870 1.02260 1.00176 0.92726 1.18892 0.94782 0.89523 0.96832 1.21228 1.17684 1.08295 1.09330 0.92617 1.25035 0.95045 0.97324 0.97041 1.70002 1.22952 1.21208 1.38680 0.86583 0.78997 0.78866 0.83452 1.20670 1.21219 1.19898 1.22624 1.01503 1.01297 0.95160 1.22536 1.00018 0.81116 0.97503 1.87905 1.69065 1.23215 1.49502 0.92499 0.92796 0.92828 0.90318 0.92732 0.92808 0.92850 0.90569 0.91016 0.90553 0.90315 0.76965 0.90275 0.90286 0.95862 0.95854 0.92956 0.90079 0.90975 0.93012 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.95 37.16 0.33 -0.75 16 2 C -0.10 -0.72 2.87 -90.62 -0.26 -0.98 16 3 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 4 C -0.11 -0.81 4.39 -26.73 -0.12 -0.92 16 5 C 0.09 0.85 2.51 -26.68 -0.07 0.79 16 6 H 0.06 0.59 6.35 -51.93 -0.33 0.26 16 7 C -0.16 -1.50 4.89 -26.59 -0.13 -1.63 16 8 C 0.14 1.82 2.54 -67.73 -0.17 1.65 16 9 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 10 N -0.74 -10.36 5.08 -53.61 -0.27 -10.63 16 11 C 0.51 9.79 7.80 -10.98 -0.09 9.70 16 12 O -0.53 -12.54 15.64 5.56 0.09 -12.45 16 13 C -0.13 -2.65 5.64 -27.88 -0.16 -2.81 16 14 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 15 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.56 13.29 55.43 0.74 -26.83 16 19 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.17 -2.01 5.72 -26.58 -0.15 -2.17 16 24 C 0.07 0.68 6.84 37.20 0.25 0.93 16 25 O -0.38 -4.03 9.86 -35.23 -0.35 -4.38 16 26 H 0.06 0.44 6.46 -51.93 -0.34 0.10 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.68 7.69 -51.93 -0.40 0.28 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 4.40 8.61 -40.82 -0.35 4.05 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -33.49 365.99 -8.58 -42.07 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.53 Total: -0.36 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -0.74 Total: -9.67 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.46 Total: -37.46 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.26 Total: -16.83 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.49 -8.58 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330879853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.994 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds