Wall clock time and date at job start Tue Mar 31 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47171 * 2 1 4 4 C 1.53003 * 109.47028 * 119.99922 * 2 1 3 5 5 C 1.53002 * 109.47216 * 65.00214 * 4 2 1 6 6 H 1.08998 * 109.48768 * 305.03084 * 5 4 2 7 7 C 1.53091 * 109.48142 * 185.00050 * 5 4 2 8 8 C 1.53176 * 109.21206 * 182.43908 * 7 5 4 9 9 H 1.09009 * 109.54076 * 176.90255 * 8 7 5 10 10 N 1.46496 * 109.54513 * 297.08017 * 8 7 5 11 11 C 1.34779 * 120.00130 * 205.00515 * 10 8 7 12 12 O 1.21282 * 119.99702 * 359.97438 * 11 10 8 13 13 C 1.50698 * 120.00020 * 180.02562 * 11 10 8 14 14 C 1.53003 * 109.47203 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47161 * 179.97438 * 14 13 11 16 16 H 1.07992 * 119.99784 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99434 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00514 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99430 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47099 * 60.00715 * 19 17 15 21 21 H 1.48504 * 109.47106 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47329 * 300.00440 * 19 17 15 23 23 C 1.53174 * 109.03724 * 56.94941 * 8 7 5 24 24 C 1.53084 * 109.16456 * 303.01556 * 23 8 7 25 25 O 1.42906 * 109.41372 * 57.61236 * 24 23 8 26 26 H 1.09000 * 109.46898 * 59.99941 * 1 2 3 27 27 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47187 * 299.99749 * 1 2 3 29 29 H 1.08995 * 109.47198 * 239.99693 * 2 1 3 30 30 H 1.08995 * 109.46974 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.46959 * 299.99825 * 3 2 1 32 32 H 1.09005 * 109.46802 * 59.99964 * 3 2 1 33 33 H 1.09002 * 109.47307 * 305.00074 * 4 2 1 34 34 H 1.09005 * 109.47089 * 184.99890 * 4 2 1 35 35 H 1.09002 * 109.52401 * 62.50061 * 7 5 4 36 36 H 1.09004 * 109.52068 * 302.37706 * 7 5 4 37 37 H 0.96997 * 120.00439 * 25.00018 * 10 8 7 38 38 H 1.09007 * 109.46790 * 299.99390 * 13 11 10 39 39 H 1.08999 * 109.47491 * 59.99628 * 13 11 10 40 40 H 1.08998 * 109.46938 * 300.00114 * 14 13 11 41 41 H 1.08999 * 109.47014 * 59.99564 * 14 13 11 42 42 H 0.96997 * 120.00223 * 179.97438 * 18 17 15 43 43 H 1.09007 * 109.52410 * 62.92341 * 23 8 7 44 44 H 1.09000 * 109.52423 * 183.04692 * 23 8 7 45 45 H 1.09004 * 109.48326 * 177.59400 * 24 23 8 46 46 H 1.08997 * 109.48095 * 297.62758 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1880 6 1 0.5565 -2.2711 1.0522 7 6 2.0355 -2.8895 2.4926 8 6 1.6830 -4.3773 2.4008 9 1 2.0156 -4.8872 3.3050 10 7 0.2330 -4.5294 2.2575 11 6 -0.3672 -5.6699 2.6519 12 8 0.2933 -6.5705 3.1250 13 6 -1.8587 -5.8266 2.5040 14 6 -2.2808 -7.2029 3.0225 15 6 -3.7724 -7.3593 2.8751 16 1 -4.3604 -6.5576 2.4534 17 6 -4.3862 -8.5265 3.2777 18 7 -3.6701 -9.5029 3.7907 19 14 -6.2352 -8.7202 3.0957 20 1 -6.6074 -8.5947 1.6636 21 1 -6.6449 -10.0560 3.5988 22 1 -6.9232 -7.6637 3.8804 23 6 2.3847 -4.9827 1.1813 24 6 1.9698 -4.2090 -0.0728 25 8 2.2979 -2.8278 0.0910 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1264 -0.6444 1.2952 35 1 1.4965 -2.4381 3.3256 36 1 3.1084 -2.7783 2.6500 37 1 -0.2952 -3.8093 1.8789 38 1 -2.3643 -5.0507 3.0788 39 1 -2.1311 -5.7357 1.4525 40 1 -1.7752 -7.9785 2.4474 41 1 -2.0084 -7.2942 4.0739 42 1 -4.1020 -10.3239 4.0743 43 1 3.4648 -4.9139 1.3111 44 1 2.0963 -6.0287 1.0771 45 1 2.4991 -4.6083 -0.9380 46 1 0.8954 -4.3119 -0.2245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330879855.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:59 Heat of formation + Delta-G solvation = -123.522760 kcal Electronic energy + Delta-G solvation = -22993.074349 eV Core-core repulsion = 19688.165223 eV Total energy + Delta-G solvation = -3304.909126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38307 -38.64973 -36.46287 -34.90641 -33.45029 -31.87443 -31.63689 -30.52273 -27.50301 -27.31366 -25.73689 -24.28415 -22.73502 -21.98758 -20.27984 -19.89288 -19.31092 -17.02086 -16.54365 -16.24595 -15.89574 -15.57734 -15.27725 -15.05965 -14.48826 -14.41321 -14.26161 -13.65115 -13.35337 -13.22883 -12.85095 -12.51654 -12.41176 -12.29095 -12.15005 -12.12916 -12.03225 -11.59701 -11.39873 -11.16770 -10.94196 -10.91926 -10.88588 -10.81441 -10.62540 -10.26550 -9.96123 -9.67244 -9.53647 -9.19065 -9.01756 -8.79741 -8.32305 -5.96447 -4.01033 3.23596 3.33967 3.38442 3.39926 3.50860 3.61625 4.31904 4.47091 4.55667 4.68066 4.73396 4.78665 4.92178 4.95380 4.99642 5.18825 5.34763 5.35831 5.38347 5.39214 5.48178 5.49844 5.54475 5.59633 5.63785 5.72385 5.75007 5.83770 5.90570 5.94888 6.00608 6.05422 6.09775 6.18940 6.21355 6.23322 6.74401 6.88267 7.10360 7.73415 7.85611 7.86129 8.06665 8.38221 8.77163 9.07431 9.62485 11.14465 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.003228 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.653386 B = 8672.656408 C = 9439.565455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.106 4.106 5 C 0.088 3.912 6 H 0.060 0.940 7 C -0.157 4.157 8 C 0.143 3.857 9 H 0.090 0.910 10 N -0.741 5.741 11 C 0.510 3.490 12 O -0.533 6.533 13 C -0.131 4.131 14 C 0.038 3.962 15 C -0.528 4.528 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.166 4.166 24 C 0.064 3.936 25 O -0.377 6.377 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.393 0.607 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.670 20.486 -7.447 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.143 4.143 5 C 0.030 3.970 6 H 0.078 0.922 7 C -0.195 4.195 8 C 0.038 3.962 9 H 0.108 0.892 10 N -0.396 5.396 11 C 0.299 3.701 12 O -0.408 6.408 13 C -0.171 4.171 14 C 0.001 3.999 15 C -0.567 4.567 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.205 4.205 24 C -0.013 4.013 25 O -0.297 6.297 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.228 0.772 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.265 19.719 -7.125 24.811 hybrid contribution -1.428 -0.050 -0.053 1.429 sum 11.837 19.669 -7.178 24.052 Atomic orbital electron populations 1.21916 0.95346 1.01880 1.01661 1.21079 0.95733 0.95810 0.98854 1.21842 1.00880 0.96121 1.01597 1.21678 1.01884 0.92367 0.98412 1.22151 0.96140 0.92579 0.86093 0.92222 1.22503 1.03169 0.95176 0.98701 1.20845 0.81385 0.95067 0.98924 0.89186 1.46364 1.07463 1.19049 1.66675 1.21570 0.91720 0.80855 0.75953 1.90666 1.66721 1.39998 1.43409 1.21875 0.88510 1.04080 1.02613 1.18883 0.95374 0.88509 0.97181 1.21188 0.92722 1.00904 1.41843 0.92681 1.25023 0.98140 0.95953 0.95245 1.69982 1.35500 1.05677 1.41683 0.86652 0.85640 0.77223 0.78406 1.20243 1.21274 1.20251 1.22555 1.00991 1.01247 0.95733 1.22524 1.00110 0.81120 0.97539 1.87903 1.69081 1.23206 1.49463 0.92790 0.92473 0.92761 0.90356 0.92791 0.92801 0.92859 0.90595 0.91075 0.90264 0.89805 0.77238 0.90309 0.90348 0.95859 0.95858 0.92882 0.90546 0.90055 0.88979 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.95 37.16 0.33 -0.79 16 2 C -0.10 -0.74 2.87 -90.62 -0.26 -1.00 16 3 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 4 C -0.11 -0.82 4.39 -26.73 -0.12 -0.93 16 5 C 0.09 0.80 2.33 -26.68 -0.06 0.74 16 6 H 0.06 0.54 4.92 -51.93 -0.26 0.28 16 7 C -0.16 -1.48 5.07 -26.59 -0.13 -1.62 16 8 C 0.14 1.77 2.82 -67.75 -0.19 1.58 16 9 H 0.09 1.30 7.58 -51.92 -0.39 0.91 16 10 N -0.74 -10.17 4.40 -53.63 -0.24 -10.41 16 11 C 0.51 9.65 7.80 -10.99 -0.09 9.57 16 12 O -0.53 -12.37 15.64 5.56 0.09 -12.28 16 13 C -0.13 -2.64 5.64 -27.88 -0.16 -2.80 16 14 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 15 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 19 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.17 -1.98 5.80 -26.60 -0.15 -2.13 16 24 C 0.06 0.69 6.68 37.20 0.25 0.93 16 25 O -0.38 -4.07 9.86 -35.23 -0.35 -4.41 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.45 6.46 -51.93 -0.34 0.12 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.70 7.70 -51.93 -0.40 0.30 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.39 4.43 7.08 -40.82 -0.29 4.14 16 38 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.58 7.75 -51.93 -0.40 0.18 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -33.13 362.16 -8.47 -41.60 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.38 Total: 0.06 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -0.77 Total: -9.90 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.50 Total: -37.18 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.26 Total: -16.70 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.13 -8.47 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330879855.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.926 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds