Wall clock time and date at job start Tue Mar 31 2020 05:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99489 * 2 1 4 4 C 1.52998 * 109.47243 * 304.38770 * 3 2 1 5 5 N 1.46500 * 109.47551 * 300.56811 * 4 3 2 6 6 C 1.34783 * 120.00047 * 185.27765 * 5 4 3 7 7 O 1.21278 * 119.99715 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99626 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46951 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47420 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99624 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00262 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00099 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00111 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47185 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47169 * 120.00062 * 14 12 10 17 17 H 1.48499 * 109.47776 * 240.00550 * 14 12 10 18 18 C 1.52994 * 109.47406 * 64.39144 * 3 2 1 19 19 C 1.53005 * 109.47012 * 59.99791 * 18 3 2 20 20 C 1.52994 * 109.47347 * 59.99942 * 19 18 3 21 21 C 1.53002 * 109.47062 * 60.00227 * 20 19 18 22 22 C 1.52999 * 109.47315 * 300.00469 * 20 19 18 23 23 C 1.53001 * 109.46973 * 184.39365 * 3 2 1 24 24 H 1.08997 * 109.46942 * 184.79220 * 1 2 3 25 25 H 1.09003 * 109.46863 * 304.78781 * 1 2 3 26 26 H 1.08999 * 109.47657 * 64.78910 * 1 2 3 27 27 H 1.09001 * 109.47087 * 60.56854 * 4 3 2 28 28 H 1.09000 * 109.47336 * 180.56753 * 4 3 2 29 29 H 0.97001 * 119.99704 * 5.27310 * 5 4 3 30 30 H 1.08995 * 109.47329 * 299.99980 * 8 6 5 31 31 H 1.09002 * 109.47183 * 60.00245 * 8 6 5 32 32 H 1.09008 * 109.47123 * 299.99822 * 9 8 6 33 33 H 1.08993 * 109.47301 * 59.99741 * 9 8 6 34 34 H 0.97000 * 120.00094 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.47713 * 179.97438 * 18 3 2 36 36 H 1.09004 * 109.46853 * 300.00080 * 18 3 2 37 37 H 1.08999 * 109.46873 * 180.02562 * 19 18 3 38 38 H 1.09002 * 109.47101 * 300.00025 * 19 18 3 39 39 H 1.09003 * 109.47515 * 180.02562 * 20 19 18 40 40 H 1.09003 * 109.46812 * 300.00256 * 21 20 19 41 41 H 1.08999 * 109.47039 * 59.99555 * 21 20 19 42 42 H 1.08991 * 109.47359 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.46720 * 299.99664 * 22 20 19 44 44 H 1.09000 * 109.47332 * 179.97438 * 22 20 19 45 45 H 1.08999 * 109.47680 * 59.99777 * 23 3 2 46 46 H 1.09002 * 109.47276 * 179.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4732 2.1028 -1.1904 5 7 1.8083 1.4070 -2.4353 6 6 1.5283 1.9788 -3.6233 7 8 0.9986 3.0691 -3.6616 8 6 1.8736 1.2632 -4.9038 9 6 1.4531 2.1227 -6.0976 10 6 1.7977 1.4070 -7.3782 11 1 2.2691 0.4359 -7.3440 12 6 1.5102 1.9913 -8.5935 13 7 0.9357 3.1736 -8.6352 14 14 1.9381 1.1044 -10.1808 15 1 2.5731 -0.2000 -9.8634 16 1 0.7001 0.8732 -10.9678 17 1 2.8806 1.9344 -10.9732 18 6 1.6480 2.0250 1.3007 19 6 2.1849 1.2277 2.4911 20 6 3.7062 1.1087 2.3807 21 6 4.3285 2.5064 2.3807 22 6 4.0685 0.3893 1.0799 23 6 3.5315 1.1866 -0.1105 24 1 -0.3633 -1.0241 0.0859 25 1 -0.3633 0.5863 0.8440 26 1 -0.3634 0.4377 -0.9297 27 1 0.3905 2.1962 -1.1065 28 1 1.9241 3.0951 -1.1961 29 1 2.2317 0.5348 -2.4045 30 1 2.9485 1.0870 -4.9431 31 1 1.3474 0.3093 -4.9402 32 1 0.3780 2.2985 -6.0581 33 1 1.9787 3.0769 -6.0614 34 1 0.7332 3.5846 -9.4901 35 1 2.0916 3.0207 1.3010 36 1 0.5641 2.1098 1.3794 37 1 1.9265 1.7401 3.4178 38 1 1.7416 0.2319 2.4911 39 1 4.0888 0.5403 3.2285 40 1 3.9460 3.0744 1.5327 41 1 4.0704 3.0190 3.3074 42 1 5.4123 2.4217 2.3016 43 1 3.6251 -0.6065 1.0799 44 1 5.1523 0.3048 1.0010 45 1 3.7896 0.6740 -1.0372 46 1 3.9748 2.1824 -0.1110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330880332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:35 Heat of formation + Delta-G solvation = -115.502336 kcal Electronic energy + Delta-G solvation = -23303.889682 eV Core-core repulsion = 19999.328348 eV Total energy + Delta-G solvation = -3304.561334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66313 -38.80431 -36.83658 -34.32582 -33.41407 -31.59592 -31.16552 -30.78547 -27.89622 -26.92860 -25.95192 -24.65148 -22.99817 -21.59615 -20.75695 -19.59117 -18.95393 -17.00136 -16.37984 -16.19138 -15.79247 -15.65480 -15.35220 -14.79980 -14.70328 -14.40518 -14.34940 -13.86453 -13.38434 -13.12159 -12.95715 -12.70758 -12.50055 -12.39351 -12.16324 -12.05266 -11.74952 -11.52669 -11.42478 -11.15401 -11.12001 -10.92725 -10.59872 -10.56852 -10.52566 -10.12202 -9.93097 -9.66723 -9.63541 -9.13689 -8.96058 -8.72858 -8.30201 -5.94240 -3.98373 3.29838 3.33915 3.38894 3.41592 3.44928 3.78482 4.35184 4.37023 4.49247 4.51059 4.80613 4.82392 4.89586 5.08528 5.13427 5.25861 5.27648 5.30108 5.38072 5.40741 5.46035 5.49816 5.54524 5.57073 5.66191 5.69861 5.75424 5.80081 5.87634 5.94977 6.01977 6.05359 6.12795 6.26629 6.27145 6.29254 6.74601 6.93482 7.05200 7.77131 7.89101 7.95678 8.09612 8.41417 8.83169 9.10663 9.65096 11.16781 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032209 B = 0.003052 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.119451 B = 9171.856355 C = 9288.597283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.370 6.370 3 C 0.111 3.889 4 C 0.094 3.906 5 N -0.737 5.737 6 C 0.509 3.491 7 O -0.538 6.538 8 C -0.130 4.130 9 C 0.037 3.963 10 C -0.525 4.525 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.143 4.143 19 C -0.107 4.107 20 C -0.092 4.092 21 C -0.153 4.153 22 C -0.110 4.110 23 C -0.106 4.106 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.400 0.600 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.260 0.740 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -6.048 25.220 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.289 6.289 3 C 0.071 3.929 4 C -0.030 4.030 5 N -0.392 5.392 6 C 0.297 3.703 7 O -0.413 6.413 8 C -0.169 4.169 9 C -0.001 4.001 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.181 4.181 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.210 4.210 22 C -0.148 4.148 23 C -0.143 4.143 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.235 0.765 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.896 -5.270 25.056 25.898 hybrid contribution 0.084 -0.548 -0.874 1.035 sum 3.981 -5.818 24.182 25.188 Atomic orbital electron populations 1.22805 0.81491 1.02545 1.00514 1.87943 1.19458 1.26626 1.94837 1.21731 0.94389 0.83678 0.93113 1.21826 1.00467 0.96640 0.84109 1.46107 1.64970 1.23024 1.05063 1.21572 0.77198 0.86201 0.85304 1.90662 1.41994 1.21162 1.87527 1.21852 1.02050 1.00650 0.92397 1.18897 0.97584 0.94490 0.89087 1.21271 1.40014 1.04074 0.91014 0.92551 1.25031 0.95260 0.94950 0.99214 1.70012 1.42095 1.15393 1.25390 0.86537 0.78068 0.79737 0.83625 1.19734 1.21042 1.21032 1.22083 1.01400 1.00012 0.94623 1.21438 0.95306 1.00660 0.97022 1.21093 0.95392 0.96546 0.97972 1.21966 1.00494 0.96741 1.01834 1.21497 1.00207 0.99547 0.93537 1.21571 0.91696 1.01676 0.99350 0.89786 0.93897 0.93412 0.91811 0.90837 0.76466 0.90282 0.90303 0.95890 0.95851 0.93039 0.90381 0.91439 0.92173 0.91361 0.91419 0.92035 0.92966 0.92804 0.91017 0.92041 0.90921 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.14 101.05 1.02 1.24 16 2 O -0.37 -3.83 8.65 -35.23 -0.30 -4.14 16 3 C 0.11 1.09 0.36 -90.62 -0.03 1.05 16 4 C 0.09 1.20 4.06 -4.04 -0.02 1.19 16 5 N -0.74 -10.72 5.09 -60.30 -0.31 -11.03 16 6 C 0.51 10.00 7.83 -10.99 -0.09 9.92 16 7 O -0.54 -12.91 15.98 5.56 0.09 -12.82 16 8 C -0.13 -2.69 5.64 -27.89 -0.16 -2.85 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.53 -15.10 9.11 -34.44 -0.31 -15.42 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 14 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.14 -1.20 4.21 -26.73 -0.11 -1.31 16 19 C -0.11 -0.81 5.30 -26.73 -0.14 -0.95 16 20 C -0.09 -0.67 3.19 -90.62 -0.29 -0.96 16 21 C -0.15 -1.07 8.50 37.16 0.32 -0.76 16 22 C -0.11 -0.90 5.31 -26.73 -0.14 -1.04 16 23 C -0.11 -0.98 4.50 -26.73 -0.12 -1.10 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.35 6.32 -51.93 -0.33 0.02 16 26 H 0.05 0.51 6.64 -51.93 -0.34 0.17 16 27 H 0.06 0.86 6.63 -51.93 -0.34 0.51 16 28 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.40 5.02 7.33 -40.82 -0.30 4.72 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.02 0.68 8.10 -51.92 -0.42 0.26 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 0.63 6.43 -51.93 -0.33 0.30 16 36 H 0.07 0.55 6.53 -51.93 -0.34 0.21 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.46 4.81 -51.93 -0.25 0.21 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.64 7.68 -51.93 -0.40 0.24 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.71 7.01 -51.93 -0.36 0.35 16 46 H 0.08 0.73 6.43 -51.93 -0.33 0.39 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -33.56 350.74 -7.73 -41.29 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.92 Total: 0.06 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -0.29 Total: -8.52 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.43 Total: -38.01 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.22 Total: -16.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.56 -7.73 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330880332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.213 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds