Wall clock time and date at job start Tue Mar 31 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34777 * 120.00000 * 119.99453 * 12 2 1 15 15 O 1.21274 * 120.00145 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 12 2 17 17 O 1.42907 * 109.47139 * 180.02562 * 16 14 12 18 18 C 1.42895 * 114.00027 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47249 * 269.99841 * 18 17 16 20 20 C 1.53004 * 109.47050 * 300.00304 * 19 18 17 21 21 C 1.53004 * 109.47026 * 299.99835 * 20 19 18 22 22 C 1.52992 * 109.46949 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47217 * 59.99836 * 21 20 19 24 24 C 1.52999 * 109.47440 * 300.00328 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 30 30 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 31 31 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 32 32 H 1.09002 * 109.47152 * 300.00044 * 16 14 12 33 33 H 1.09000 * 109.47333 * 60.00571 * 16 14 12 34 34 H 1.08997 * 109.47473 * 29.99745 * 18 17 16 35 35 H 1.08997 * 109.46962 * 60.00006 * 19 18 17 36 36 H 1.08999 * 109.47306 * 180.02562 * 19 18 17 37 37 H 1.08996 * 109.46951 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.47154 * 59.99799 * 20 19 18 39 39 H 1.08998 * 109.46669 * 300.00255 * 21 20 19 40 40 H 1.08999 * 109.46953 * 299.99794 * 22 21 20 41 41 H 1.09002 * 109.47609 * 59.99670 * 22 21 20 42 42 H 1.09005 * 109.47194 * 179.97438 * 22 21 20 43 43 H 1.08997 * 109.47109 * 180.02562 * 23 21 20 44 44 H 1.08999 * 109.46954 * 60.00041 * 23 21 20 45 45 H 1.08999 * 109.46813 * 299.99799 * 24 23 21 46 46 H 1.08992 * 109.47424 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7457 -3.3141 17 8 4.0894 0.1524 -4.0917 18 6 4.6166 -0.4248 -5.2879 19 6 5.9824 -1.0486 -4.9943 20 6 6.9381 0.0325 -4.4854 21 6 7.0924 1.1195 -5.5511 22 6 8.0485 2.2002 -5.0425 23 6 5.7265 1.7433 -5.8448 24 6 4.7708 0.6622 -6.3536 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 0.7376 -2.1442 -1.9994 30 1 2.4629 -2.5818 -1.9864 31 1 1.5295 -2.5968 -0.4710 32 1 3.9004 -1.6023 -3.0178 33 1 2.4470 -1.0878 -3.9074 34 1 3.9358 -1.1949 -5.6504 35 1 5.8725 -1.8229 -4.2351 36 1 6.3848 -1.4884 -5.9068 37 1 7.9112 -0.4118 -4.2767 38 1 6.5360 0.4727 -3.5730 39 1 7.4945 0.6792 -6.4635 40 1 7.6467 2.6405 -4.1300 41 1 9.0215 1.7555 -4.8336 42 1 8.1588 2.9744 -5.8019 43 1 5.8364 2.5173 -6.6043 44 1 5.3244 2.1835 -4.9324 45 1 5.1730 0.2220 -7.2660 46 1 3.7977 1.1065 -6.5624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331077828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:45 Heat of formation + Delta-G solvation = -104.459183 kcal Electronic energy + Delta-G solvation = -23435.014893 eV Core-core repulsion = 20130.932425 eV Total energy + Delta-G solvation = -3304.082467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.66318 -38.72666 -36.29999 -35.16022 -32.87119 -31.82741 -30.80733 -29.78368 -27.19094 -26.07786 -25.88333 -25.19031 -22.72381 -21.30553 -21.11768 -19.57653 -18.42413 -16.71961 -16.51372 -16.06612 -15.78917 -15.31833 -15.02391 -14.47507 -14.26128 -14.17457 -13.80884 -13.30752 -13.00951 -12.89411 -12.55389 -12.35145 -12.33589 -12.04491 -11.74391 -11.59243 -11.51503 -11.49794 -11.33723 -11.07304 -11.02904 -10.84121 -10.68215 -10.45604 -10.28940 -10.22992 -10.15840 -10.04979 -9.35450 -9.17774 -8.82686 -8.40631 -7.57818 -6.06025 -4.14234 3.28356 3.32383 3.33941 3.41103 3.41883 4.29406 4.43689 4.64078 4.69033 4.78664 5.06571 5.10104 5.14789 5.24538 5.28886 5.30925 5.36304 5.45756 5.50380 5.54350 5.63622 5.72591 5.74453 5.81144 5.83000 5.96275 5.99969 6.01411 6.20047 6.25320 6.30518 6.33022 6.34699 6.58829 6.76466 6.84227 7.07251 7.24639 7.47793 7.56753 7.72570 8.03728 8.21117 8.53380 8.84810 9.09148 9.52124 10.99312 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.003772 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.245974 B = 7421.884651 C = 7799.476512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.082 3.918 14 C 0.504 3.496 15 O -0.532 6.532 16 C 0.045 3.955 17 O -0.348 6.348 18 C 0.086 3.914 19 C -0.140 4.140 20 C -0.112 4.112 21 C -0.089 4.089 22 C -0.148 4.148 23 C -0.113 4.113 24 C -0.112 4.112 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.011 0.989 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 -5.247 -17.178 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.327 5.327 13 C -0.062 4.062 14 C 0.290 3.710 15 O -0.409 6.409 16 C -0.035 4.035 17 O -0.266 6.266 18 C 0.027 3.973 19 C -0.178 4.178 20 C -0.149 4.149 21 C -0.107 4.107 22 C -0.205 4.205 23 C -0.151 4.151 24 C -0.150 4.150 25 H 0.112 0.888 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.730 -4.301 -16.855 19.035 hybrid contribution 0.197 -1.030 0.798 1.318 sum 7.927 -5.331 -16.057 18.684 Atomic orbital electron populations 1.22082 0.98157 0.99369 1.00816 1.18933 0.90849 0.94568 0.79699 0.91874 1.21280 1.31921 1.13059 0.90321 0.92304 1.24890 0.94929 0.94977 0.98936 1.69870 1.36264 1.22525 1.23867 0.86553 0.79254 0.79538 0.82011 1.20238 1.21151 1.20248 1.48200 1.49339 1.11617 1.23572 1.21615 0.98669 0.83378 1.02514 1.20011 0.79726 0.87341 0.83938 1.90668 1.57221 1.16807 1.76160 1.22368 0.95136 0.93112 0.92879 1.88084 1.67598 1.36554 1.34393 1.22123 0.93893 0.95232 0.86017 1.22015 0.96118 0.98344 1.01291 1.21499 0.98342 0.95657 0.99415 1.21099 0.95525 0.95893 0.98201 1.21824 0.98838 0.98442 1.01391 1.21525 0.94345 0.97237 1.01953 1.21591 1.00425 0.96508 0.96457 0.88816 0.95175 0.97011 0.92612 0.93826 0.93062 0.89904 0.91163 0.91254 0.92455 0.91901 0.91445 0.92547 0.90597 0.91956 0.92295 0.93034 0.93011 0.92479 0.90389 0.91127 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.73 2.64 -69.08 -0.18 6.55 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.53 -14.32 7.99 -34.44 -0.28 -14.60 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.59 -12.84 2.75 -175.27 -0.48 -13.33 16 13 C 0.08 1.36 9.24 59.85 0.55 1.91 16 14 C 0.50 10.88 7.75 -10.99 -0.09 10.79 16 15 O -0.53 -13.96 15.83 -14.35 -0.23 -14.18 16 16 C 0.05 0.71 4.78 36.00 0.17 0.88 16 17 O -0.35 -5.64 8.17 -55.14 -0.45 -6.09 16 18 C 0.09 1.01 2.92 -26.73 -0.08 0.93 16 19 C -0.14 -1.49 5.63 -26.73 -0.15 -1.64 16 20 C -0.11 -1.31 5.06 -26.73 -0.14 -1.44 16 21 C -0.09 -0.94 2.72 -90.62 -0.25 -1.18 16 22 C -0.15 -1.50 9.19 37.15 0.34 -1.16 16 23 C -0.11 -1.30 5.06 -26.73 -0.14 -1.44 16 24 C -0.11 -1.19 5.66 -26.73 -0.15 -1.34 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 26 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.67 6.44 -51.93 -0.33 0.34 16 31 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 32 H 0.07 0.96 7.13 -51.93 -0.37 0.59 16 33 H 0.07 0.91 8.05 -51.93 -0.42 0.50 16 34 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 35 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.12 7.68 -51.93 -0.40 0.72 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.08 1.13 7.68 -51.93 -0.40 0.73 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 357.34 15.07 5.38 5.38 Total: -1.00 -31.76 357.34 -8.64 -40.41 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.34 Total: -0.35 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.13 Total: -3.25 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.14 Total: -37.98 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.68 Total: -20.28 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.76 -8.64 -40.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331077828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.052 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds