Wall clock time and date at job start Tue Mar 31 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 C 1.34779 * 119.99763 * 239.99831 * 12 2 1 15 15 O 1.21282 * 120.00170 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00024 * 179.97438 * 14 12 2 17 17 O 1.42896 * 109.47126 * 180.02562 * 16 14 12 18 18 C 1.42897 * 114.00065 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47234 * 270.00127 * 18 17 16 20 20 C 1.53004 * 109.46749 * 299.99755 * 19 18 17 21 21 C 1.52992 * 109.47232 * 299.99752 * 20 19 18 22 22 C 1.53004 * 109.47232 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47051 * 60.00433 * 21 20 19 24 24 C 1.52997 * 109.47192 * 299.99682 * 23 21 20 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 30 30 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 31 31 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 32 32 H 1.09004 * 109.47134 * 299.99971 * 16 14 12 33 33 H 1.09001 * 109.46597 * 60.00090 * 16 14 12 34 34 H 1.09005 * 109.47106 * 29.99964 * 18 17 16 35 35 H 1.09001 * 109.47080 * 59.99758 * 19 18 17 36 36 H 1.08998 * 109.47116 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46478 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.46944 * 60.00345 * 20 19 18 39 39 H 1.08998 * 109.47640 * 300.00167 * 21 20 19 40 40 H 1.08998 * 109.46944 * 300.00593 * 22 21 20 41 41 H 1.09000 * 109.46962 * 60.00317 * 22 21 20 42 42 H 1.09001 * 109.47332 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47080 * 179.97438 * 23 21 20 44 44 H 1.08994 * 109.47550 * 59.99653 * 23 21 20 45 45 H 1.09006 * 109.47165 * 300.00062 * 24 23 21 46 46 H 1.09000 * 109.47405 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2953 -0.7459 3.3140 17 8 4.0887 0.1524 4.0920 18 6 4.6168 -0.4251 5.2877 19 6 3.6273 -0.2154 6.4356 20 6 3.4037 1.2832 6.6487 21 6 4.7349 1.9534 6.9940 22 6 4.5114 3.4521 7.2064 23 6 5.7244 1.7437 5.8461 24 6 5.9482 0.2452 5.6330 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1618 -3.4844 29 1 2.4157 -2.7377 0.9716 30 1 1.6239 -2.2853 2.5002 31 1 0.6905 -2.3003 0.9847 32 1 2.4472 -1.0881 3.9073 33 1 3.9006 -1.6025 3.0176 34 1 4.7762 -1.4927 5.1359 35 1 2.6789 -0.6929 6.1896 36 1 4.0304 -0.6555 7.3477 37 1 2.6991 1.4326 7.4668 38 1 3.0009 1.7236 5.7367 39 1 5.1378 1.5130 7.9060 40 1 4.1088 3.8922 6.2942 41 1 3.8063 3.6020 8.0240 42 1 5.4599 3.9297 7.4520 43 1 6.6727 2.2216 6.0919 44 1 5.3217 2.1841 4.9341 45 1 6.3510 -0.1953 6.5450 46 1 6.6528 0.0957 4.8149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331077829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:48 Heat of formation + Delta-G solvation = -103.785514 kcal Electronic energy + Delta-G solvation = -23410.132802 eV Core-core repulsion = 20106.079547 eV Total energy + Delta-G solvation = -3304.053255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66934 -38.73248 -36.30842 -35.16686 -32.87173 -31.83572 -30.81956 -29.78516 -27.18512 -26.10863 -25.91074 -25.17751 -22.73420 -21.30919 -21.11952 -19.58745 -18.41423 -16.72246 -16.45267 -16.25395 -15.59880 -15.36638 -15.07436 -14.48771 -14.26214 -14.18206 -13.83263 -13.23242 -13.04726 -12.96634 -12.62336 -12.37055 -12.34549 -12.05943 -11.74356 -11.58146 -11.52641 -11.48168 -11.34706 -11.08012 -11.05177 -10.79824 -10.69088 -10.47250 -10.27966 -10.22230 -10.16098 -10.06026 -9.35738 -9.15374 -8.83256 -8.41201 -7.57519 -6.05976 -4.13876 3.26706 3.32495 3.35858 3.41446 3.42402 4.29311 4.43734 4.62849 4.68140 4.77530 5.05582 5.09353 5.14133 5.23816 5.28658 5.28837 5.35872 5.46759 5.49789 5.53434 5.62400 5.70277 5.72795 5.79547 5.81639 5.95299 5.98867 6.04487 6.18324 6.23969 6.27495 6.29365 6.31299 6.57329 6.76860 6.82554 7.06155 7.24465 7.48092 7.55859 7.72894 8.03728 8.20834 8.53450 8.85782 9.09044 9.52695 10.99400 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027990 B = 0.003527 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.124666 B = 7936.568628 C = 7999.424958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.594 5.594 13 C 0.085 3.915 14 C 0.504 3.496 15 O -0.532 6.532 16 C 0.045 3.955 17 O -0.348 6.348 18 C 0.085 3.915 19 C -0.140 4.140 20 C -0.111 4.111 21 C -0.089 4.089 22 C -0.148 4.148 23 C -0.113 4.113 24 C -0.113 4.113 25 H 0.012 0.988 26 H 0.094 0.906 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 -4.368 18.792 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.328 5.328 13 C -0.059 4.059 14 C 0.290 3.710 15 O -0.409 6.409 16 C -0.035 4.035 17 O -0.266 6.266 18 C 0.027 3.973 19 C -0.178 4.178 20 C -0.149 4.149 21 C -0.107 4.107 22 C -0.205 4.205 23 C -0.151 4.151 24 C -0.150 4.150 25 H 0.031 0.969 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.234 -3.428 18.475 19.506 hybrid contribution 0.157 -1.006 -0.807 1.299 sum 5.391 -4.434 17.668 18.997 Atomic orbital electron populations 1.22097 0.98207 0.99340 1.00901 1.18949 0.90831 0.94576 0.79771 0.91838 1.21359 1.31722 1.12957 0.90279 0.92241 1.24900 0.94975 0.94991 0.98980 1.69889 1.36464 1.22606 1.23640 0.86434 0.78581 0.79574 0.82758 1.19838 1.20958 1.20899 1.48195 1.49256 1.11664 1.23644 1.21572 1.01855 0.83324 0.99106 1.20010 0.79688 0.87339 0.83980 1.90670 1.57181 1.16774 1.76238 1.22369 0.95483 0.92988 0.92652 1.88083 1.67789 1.36728 1.34021 1.22125 0.93549 0.96443 0.85167 1.22016 0.99673 0.97685 0.98377 1.21496 0.96734 0.94703 1.01943 1.21101 0.95941 0.95649 0.98036 1.21825 1.01151 0.95776 1.01737 1.21526 0.98525 0.95624 0.99402 1.21593 0.95532 0.96615 1.01276 0.96937 0.88759 0.95103 0.92742 0.93223 0.93203 0.90669 0.91294 0.91117 0.92419 0.91950 0.91425 0.92574 0.90656 0.91933 0.92320 0.93047 0.92986 0.92460 0.90388 0.91125 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.95 37.16 0.33 -3.21 16 2 C 0.26 6.71 2.64 -69.08 -0.18 6.53 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.52 -14.32 8.37 -34.44 -0.29 -14.61 16 5 H 0.06 1.60 7.65 -52.48 -0.40 1.20 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.59 -12.84 2.75 -175.26 -0.48 -13.32 16 13 C 0.09 1.41 9.48 59.85 0.57 1.98 16 14 C 0.50 10.86 7.75 -10.98 -0.09 10.78 16 15 O -0.53 -13.94 15.83 -14.36 -0.23 -14.17 16 16 C 0.05 0.71 4.78 36.01 0.17 0.88 16 17 O -0.35 -5.63 8.17 -55.14 -0.45 -6.08 16 18 C 0.09 1.00 2.92 -26.73 -0.08 0.93 16 19 C -0.14 -1.45 5.63 -26.73 -0.15 -1.60 16 20 C -0.11 -1.26 5.06 -26.73 -0.14 -1.39 16 21 C -0.09 -0.92 2.72 -90.62 -0.25 -1.17 16 22 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 23 C -0.11 -1.30 5.06 -26.73 -0.14 -1.43 16 24 C -0.11 -1.21 5.66 -26.73 -0.15 -1.36 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 31 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 32 H 0.07 0.91 7.13 -51.93 -0.37 0.54 16 33 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 34 H 0.06 0.59 7.79 -51.93 -0.40 0.18 16 35 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 1.13 7.68 -51.93 -0.40 0.73 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -31.92 356.65 -8.59 -40.51 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.27 Total: -0.62 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -0.13 Total: -3.13 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.15 Total: -38.03 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.68 Total: -20.26 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.92 -8.59 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331077829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.276 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds