Wall clock time and date at job start Tue Mar 31 2020 05:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46822 * 2 1 4 4 C 1.42905 * 113.99662 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.90688 * 338.24841 * 4 3 2 6 6 C 1.53774 * 113.61639 * 109.50145 * 4 3 2 7 7 C 1.53784 * 87.08335 * 139.97754 * 6 4 3 8 8 H 1.09001 * 113.61442 * 89.11230 * 7 6 4 9 9 N 1.46494 * 113.61619 * 220.02333 * 7 6 4 10 10 C 1.46498 * 120.00168 * 5.22906 * 9 7 6 11 11 C 1.34784 * 119.99817 * 185.23691 * 9 7 6 12 12 O 1.21685 * 119.99903 * 359.97438 * 11 9 7 13 13 C 1.46372 * 119.99930 * 179.97438 * 11 9 7 14 14 H 1.08001 * 119.99995 * 359.97438 * 13 11 9 15 15 C 1.40050 * 119.99985 * 179.97438 * 13 11 9 16 16 N 1.30672 * 119.99757 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99861 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46811 * 60.00409 * 17 15 13 19 19 H 1.48503 * 109.46909 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47354 * 300.00278 * 17 15 13 21 21 C 1.53780 * 87.07982 * 334.56814 * 7 6 4 22 22 C 1.52998 * 113.61423 * 270.88347 * 21 7 6 23 23 C 1.53007 * 109.47175 * 271.84755 * 22 21 7 24 24 C 1.52998 * 113.61909 * 139.97695 * 21 7 6 25 25 C 1.52993 * 109.47531 * 197.25156 * 24 21 7 26 26 H 1.08993 * 109.47457 * 300.00149 * 1 2 3 27 27 H 1.08999 * 109.46681 * 60.00453 * 1 2 3 28 28 H 1.09003 * 109.46667 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47073 * 239.99683 * 2 1 3 30 30 H 1.08999 * 109.46681 * 119.99547 * 2 1 3 31 31 H 1.08998 * 113.61996 * 254.52493 * 6 4 3 32 32 H 1.09004 * 113.61661 * 25.43010 * 6 4 3 33 33 H 1.09001 * 109.47054 * 86.22462 * 10 9 7 34 34 H 1.09005 * 109.46966 * 206.22299 * 10 9 7 35 35 H 1.09000 * 109.47289 * 326.22545 * 10 9 7 36 36 H 0.97001 * 119.99593 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47240 * 31.84893 * 22 21 7 38 38 H 1.08999 * 109.47300 * 151.85388 * 22 21 7 39 39 H 1.08995 * 109.47179 * 184.44620 * 23 22 21 40 40 H 1.09002 * 109.47096 * 304.44708 * 23 22 21 41 41 H 1.08998 * 109.46686 * 64.44294 * 23 22 21 42 42 H 1.09001 * 109.47140 * 317.25355 * 24 21 7 43 43 H 1.09008 * 109.46998 * 77.24673 * 24 21 7 44 44 H 1.09006 * 109.47173 * 184.92299 * 25 24 21 45 45 H 1.08995 * 109.47107 * 304.92342 * 25 24 21 46 46 H 1.08994 * 109.47219 * 64.92521 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9276 0.5639 0.3712 6 6 4.0073 1.9779 -1.3289 7 6 4.9915 2.8078 -0.4877 8 1 5.9149 2.2800 -0.2491 9 7 5.2243 4.1543 -1.0157 10 6 4.4580 4.6313 -2.1696 11 6 6.1436 4.9543 -0.4399 12 8 6.7798 4.5582 0.5188 13 6 6.3766 6.2995 -0.9678 14 1 5.8122 6.6508 -1.8189 15 6 7.3315 7.1309 -0.3692 16 7 8.0147 6.7056 0.6603 17 14 7.6293 8.8474 -1.0434 18 1 6.3718 9.6336 -0.9687 19 1 8.6821 9.5191 -0.2396 20 1 8.0714 8.7539 -2.4579 21 6 3.9461 2.7603 0.6391 22 6 2.9376 3.9097 0.5884 23 6 3.4872 5.1052 1.3693 24 6 4.5522 2.5608 2.0296 25 6 3.4621 2.1024 3.0003 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.4887 1.2043 -1.9271 32 1 3.3056 2.5829 -1.9031 33 1 3.5168 5.0619 -1.8279 34 1 5.0337 5.3903 -2.6994 35 1 4.2535 3.7966 -2.8401 36 1 8.6758 7.2816 1.0751 37 1 2.7690 4.1997 -0.4488 38 1 1.9962 3.5871 1.0331 39 1 2.7367 5.8951 1.4002 40 1 3.7299 4.7948 2.3856 41 1 4.3864 5.4774 0.8785 42 1 5.3355 1.8045 1.9795 43 1 4.9776 3.5017 2.3789 44 1 3.8738 2.0445 4.0080 45 1 2.6384 2.8159 2.9848 46 1 3.0977 1.1201 2.6998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332079881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:34 Heat of formation + Delta-G solvation = -63.992078 kcal Electronic energy + Delta-G solvation = -24780.048406 eV Core-core repulsion = 21477.720724 eV Total energy + Delta-G solvation = -3302.327682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38050 -37.39470 -36.12163 -33.65861 -32.46434 -32.25746 -30.77196 -30.45601 -26.54865 -26.06122 -24.89909 -23.53751 -22.87809 -22.50383 -20.74675 -19.37659 -17.38857 -16.72824 -16.24402 -15.74142 -15.55991 -15.23543 -14.98565 -14.28460 -14.05473 -13.79114 -13.22415 -12.74794 -12.66262 -12.58503 -12.28396 -12.17621 -12.07535 -11.78962 -11.60504 -11.52052 -11.33652 -11.19702 -11.17534 -10.97180 -10.92531 -10.72899 -10.52419 -10.26591 -10.23089 -10.07664 -9.84605 -9.73805 -9.59539 -8.94889 -8.79336 -7.50172 -7.05527 -6.15013 -4.59800 3.17016 3.22424 3.23609 3.80874 4.13455 4.59356 4.70441 4.85234 4.93295 5.05387 5.08830 5.24553 5.26950 5.34986 5.53401 5.59576 5.66530 5.80835 5.84631 5.85104 5.89671 5.94221 6.02232 6.04367 6.05465 6.11499 6.29477 6.34671 6.38141 6.41178 6.52162 6.54694 6.61700 6.71597 6.83337 6.87906 6.97566 7.09257 7.38613 7.48425 7.50119 7.67951 8.20147 8.42373 9.06620 9.50717 10.62800 10.82714 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027725 B = 0.005001 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.692291 B = 5597.612647 C = 5921.715944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.070 3.930 5 H 0.080 0.920 6 C -0.167 4.167 7 C 0.153 3.847 8 H 0.089 0.911 9 N -0.631 5.631 10 C 0.095 3.905 11 C 0.563 3.437 12 O -0.572 6.572 13 C -0.545 4.545 14 H 0.070 0.930 15 C 0.090 3.910 16 N -0.767 5.767 17 Si 0.902 3.098 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.269 1.269 21 C -0.074 4.074 22 C -0.076 4.076 23 C -0.158 4.158 24 C -0.107 4.107 25 C -0.143 4.143 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.267 0.733 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.036 0.964 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.472 -9.804 -1.809 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.012 3.988 5 H 0.098 0.902 6 C -0.205 4.205 7 C 0.047 3.953 8 H 0.107 0.893 9 N -0.368 5.368 10 C -0.049 4.049 11 C 0.369 3.631 12 O -0.454 6.454 13 C -0.582 4.582 14 H 0.088 0.912 15 C -0.130 4.130 16 N -0.396 5.396 17 Si 0.727 3.273 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.076 4.076 22 C -0.113 4.113 23 C -0.215 4.215 24 C -0.144 4.144 25 C -0.201 4.201 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.079 -9.815 -1.141 14.845 hybrid contribution 0.251 0.538 -0.456 0.748 sum -10.829 -9.277 -1.596 14.348 Atomic orbital electron populations 1.21725 0.94235 1.01730 1.03006 1.22429 0.95226 0.84992 0.99527 1.87974 1.20938 1.24975 1.94558 1.23655 0.80420 0.97971 0.96738 0.90180 1.23872 0.99397 0.99877 0.97365 1.21823 0.95103 0.85663 0.92672 0.89294 1.47815 1.42529 1.13240 1.33237 1.21542 0.95714 0.98633 0.89010 1.18061 0.77419 0.85022 0.82574 1.90603 1.50028 1.75578 1.29205 1.20994 1.22732 0.98053 1.16444 0.91192 1.25686 0.94466 0.99038 0.93822 1.70008 1.17378 1.35419 1.16748 0.86528 0.78533 0.82738 0.79527 1.19309 1.20657 1.19374 1.22620 0.96135 0.93452 0.95442 1.20962 0.96202 0.93516 1.00652 1.21967 1.02264 0.96932 1.00342 1.21468 0.96776 1.02458 0.93717 1.21724 0.99301 1.00529 0.98507 0.91978 0.91994 0.91621 0.93877 0.93858 0.91752 0.88589 0.94888 0.90872 0.93934 0.92202 0.91931 0.92788 0.94532 0.93330 0.89735 0.92826 0.89923 0.93670 0.92718 0.93815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.06 0.61 6.51 37.16 0.24 0.85 16 3 O -0.37 -5.21 9.22 -35.23 -0.32 -5.54 16 4 C 0.07 1.04 3.11 -25.92 -0.08 0.96 16 5 H 0.08 1.10 7.86 -51.93 -0.41 0.69 16 6 C -0.17 -2.57 6.35 -25.92 -0.16 -2.74 16 7 C 0.15 2.95 3.32 -67.12 -0.22 2.72 16 8 H 0.09 1.87 7.88 -51.93 -0.41 1.46 16 9 N -0.63 -13.81 2.00 -174.66 -0.35 -14.15 16 10 C 0.10 1.76 8.67 59.85 0.52 2.28 16 11 C 0.56 15.27 5.18 -12.98 -0.07 15.20 16 12 O -0.57 -17.49 14.92 5.20 0.08 -17.41 16 13 C -0.55 -14.91 8.75 -35.63 -0.31 -15.22 16 14 H 0.07 1.77 5.91 -52.49 -0.31 1.46 16 15 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 16 N -0.77 -22.49 11.83 55.55 0.66 -21.84 16 17 Si 0.90 19.98 29.56 -169.99 -5.02 14.95 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 C -0.07 -1.30 0.61 -153.70 -0.09 -1.40 16 22 C -0.08 -1.36 3.90 -26.73 -0.10 -1.47 16 23 C -0.16 -3.16 9.19 37.16 0.34 -2.82 16 24 C -0.11 -1.91 4.76 -26.74 -0.13 -2.04 16 25 C -0.14 -2.14 9.45 37.15 0.35 -1.79 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.48 5.74 -51.93 -0.30 1.18 16 33 H 0.03 0.59 6.40 -51.93 -0.33 0.25 16 34 H 0.07 1.41 5.88 -51.93 -0.31 1.10 16 35 H 0.04 0.67 6.21 -51.93 -0.32 0.35 16 36 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 37 H 0.06 1.14 4.63 -51.93 -0.24 0.90 16 38 H 0.05 0.92 7.10 -51.93 -0.37 0.56 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.96 5.87 -51.93 -0.31 0.65 16 41 H 0.08 2.05 5.01 -51.93 -0.26 1.79 16 42 H 0.05 0.95 8.06 -51.93 -0.42 0.53 16 43 H 0.08 1.76 6.22 -51.92 -0.32 1.44 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.83 6.92 -51.93 -0.36 0.47 16 46 H 0.04 0.60 7.77 -51.93 -0.40 0.19 16 LS Contribution 345.33 15.07 5.20 5.20 Total: -1.00 -31.43 345.33 -6.77 -38.20 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.58 Total: 4.69 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 0.57 Total: -4.11 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.31 Total: -35.99 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.25 Total: -22.95 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.43 -6.77 -38.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332079881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.790 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds