Wall clock time and date at job start Tue Mar 31 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46822 * 2 1 4 4 C 1.42905 * 113.99662 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.90688 * 338.24841 * 4 3 2 6 6 C 1.53774 * 113.61639 * 109.50145 * 4 3 2 7 7 C 1.53784 * 87.08335 * 139.97754 * 6 4 3 8 8 H 1.09001 * 113.61442 * 89.11230 * 7 6 4 9 9 N 1.46494 * 113.61619 * 220.02333 * 7 6 4 10 10 C 1.46498 * 120.00168 * 5.22906 * 9 7 6 11 11 C 1.34784 * 119.99817 * 185.23691 * 9 7 6 12 12 O 1.21685 * 119.99903 * 359.97438 * 11 9 7 13 13 C 1.46372 * 119.99930 * 179.97438 * 11 9 7 14 14 H 1.08001 * 119.99995 * 359.97438 * 13 11 9 15 15 C 1.40050 * 119.99985 * 179.97438 * 13 11 9 16 16 N 1.30672 * 119.99757 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99861 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46811 * 60.00409 * 17 15 13 19 19 H 1.48503 * 109.46909 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47354 * 300.00278 * 17 15 13 21 21 C 1.53780 * 87.07982 * 334.56814 * 7 6 4 22 22 C 1.52998 * 113.61423 * 270.88347 * 21 7 6 23 23 C 1.53007 * 109.47175 * 271.84755 * 22 21 7 24 24 C 1.52998 * 113.61909 * 139.97695 * 21 7 6 25 25 C 1.52993 * 109.47531 * 197.25156 * 24 21 7 26 26 H 1.08993 * 109.47457 * 300.00149 * 1 2 3 27 27 H 1.08999 * 109.46681 * 60.00453 * 1 2 3 28 28 H 1.09003 * 109.46667 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47073 * 239.99683 * 2 1 3 30 30 H 1.08999 * 109.46681 * 119.99547 * 2 1 3 31 31 H 1.08998 * 113.61996 * 254.52493 * 6 4 3 32 32 H 1.09004 * 113.61661 * 25.43010 * 6 4 3 33 33 H 1.09001 * 109.47054 * 86.22462 * 10 9 7 34 34 H 1.09005 * 109.46966 * 206.22299 * 10 9 7 35 35 H 1.09000 * 109.47289 * 326.22545 * 10 9 7 36 36 H 0.97001 * 119.99593 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47240 * 31.84893 * 22 21 7 38 38 H 1.08999 * 109.47300 * 151.85388 * 22 21 7 39 39 H 1.08995 * 109.47179 * 184.44620 * 23 22 21 40 40 H 1.09002 * 109.47096 * 304.44708 * 23 22 21 41 41 H 1.08998 * 109.46686 * 64.44294 * 23 22 21 42 42 H 1.09001 * 109.47140 * 317.25355 * 24 21 7 43 43 H 1.09008 * 109.46998 * 77.24673 * 24 21 7 44 44 H 1.09006 * 109.47173 * 184.92299 * 25 24 21 45 45 H 1.08995 * 109.47107 * 304.92342 * 25 24 21 46 46 H 1.08994 * 109.47219 * 64.92521 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9276 0.5639 0.3712 6 6 4.0073 1.9779 -1.3289 7 6 4.9915 2.8078 -0.4877 8 1 5.9149 2.2800 -0.2491 9 7 5.2243 4.1543 -1.0157 10 6 4.4580 4.6313 -2.1696 11 6 6.1436 4.9543 -0.4399 12 8 6.7798 4.5582 0.5188 13 6 6.3766 6.2995 -0.9678 14 1 5.8122 6.6508 -1.8189 15 6 7.3315 7.1309 -0.3692 16 7 8.0147 6.7056 0.6603 17 14 7.6293 8.8474 -1.0434 18 1 6.3718 9.6336 -0.9687 19 1 8.6821 9.5191 -0.2396 20 1 8.0714 8.7539 -2.4579 21 6 3.9461 2.7603 0.6391 22 6 2.9376 3.9097 0.5884 23 6 3.4872 5.1052 1.3693 24 6 4.5522 2.5608 2.0296 25 6 3.4621 2.1024 3.0003 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.4887 1.2043 -1.9271 32 1 3.3056 2.5829 -1.9031 33 1 3.5168 5.0619 -1.8279 34 1 5.0337 5.3903 -2.6994 35 1 4.2535 3.7966 -2.8401 36 1 8.6758 7.2816 1.0751 37 1 2.7690 4.1997 -0.4488 38 1 1.9962 3.5871 1.0331 39 1 2.7367 5.8951 1.4002 40 1 3.7299 4.7948 2.3856 41 1 4.3864 5.4774 0.8785 42 1 5.3355 1.8045 1.9795 43 1 4.9776 3.5017 2.3789 44 1 3.8738 2.0445 4.0080 45 1 2.6384 2.8159 2.9848 46 1 3.0977 1.1201 2.6998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332079881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:33 Heat of formation + Delta-G solvation = -82.988621 kcal Electronic energy + Delta-G solvation = -24780.872158 eV Core-core repulsion = 21477.720724 eV Total energy + Delta-G solvation = -3303.151434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79715 -38.98824 -37.56124 -35.33762 -34.51813 -33.75788 -31.97512 -31.62792 -28.47645 -27.69280 -26.31515 -24.97512 -24.29768 -23.45308 -22.22360 -21.09340 -18.88284 -18.33681 -17.87778 -17.38802 -17.04846 -16.41572 -16.39708 -15.87953 -15.60576 -15.27709 -14.63340 -14.18959 -13.99590 -13.82935 -13.64820 -13.58133 -13.35800 -13.30421 -13.16980 -13.05226 -12.89905 -12.71772 -12.66980 -12.35913 -12.22490 -12.12104 -12.00169 -11.91501 -11.84454 -11.68472 -11.25963 -11.19194 -11.01800 -10.83813 -10.13784 -9.62217 -8.83573 -8.20535 -6.74068 1.39896 1.42750 1.52974 2.25929 2.55875 2.69545 3.16318 3.53977 3.59357 3.74095 3.83467 3.93092 4.21065 4.27119 4.32346 4.39300 4.47459 4.51163 4.57292 4.58196 4.60006 4.65312 4.75083 4.82924 4.88824 4.92816 4.95491 5.02378 5.08203 5.09358 5.12705 5.17537 5.24038 5.31103 5.38915 5.41439 5.44361 5.53524 5.56268 5.73369 5.86180 6.22353 6.45410 6.57158 6.96552 7.57078 8.59588 8.79357 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027725 B = 0.005001 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.692291 B = 5597.612647 C = 5921.715944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.377 6.377 4 C 0.090 3.910 5 H 0.096 0.904 6 C -0.150 4.150 7 C 0.132 3.868 8 H 0.061 0.939 9 N -0.629 5.629 10 C 0.094 3.906 11 C 0.556 3.444 12 O -0.620 6.620 13 C -0.572 4.572 14 H 0.086 0.914 15 C 0.034 3.966 16 N -0.820 5.820 17 Si 0.984 3.016 18 H -0.257 1.257 19 H -0.278 1.278 20 H -0.256 1.256 21 C -0.079 4.079 22 C -0.065 4.065 23 C -0.151 4.151 24 C -0.104 4.104 25 C -0.132 4.132 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.270 0.730 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.037 0.963 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 -10.700 -3.329 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.297 6.297 4 C 0.032 3.968 5 H 0.113 0.887 6 C -0.187 4.187 7 C 0.027 3.973 8 H 0.079 0.921 9 N -0.365 5.365 10 C -0.049 4.049 11 C 0.361 3.639 12 O -0.506 6.506 13 C -0.608 4.608 14 H 0.104 0.896 15 C -0.181 4.181 16 N -0.450 5.450 17 Si 0.804 3.196 18 H -0.181 1.181 19 H -0.203 1.203 20 H -0.180 1.180 21 C -0.080 4.080 22 C -0.102 4.102 23 C -0.209 4.209 24 C -0.141 4.141 25 C -0.189 4.189 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.454 -10.740 -2.700 17.426 hybrid contribution 0.926 0.734 0.030 1.182 sum -12.528 -10.006 -2.670 16.254 Atomic orbital electron populations 1.21734 0.92963 1.03118 1.02569 1.22696 0.96256 0.83445 1.00564 1.87952 1.19878 1.27291 1.94531 1.23355 0.81361 0.96780 0.95338 0.88669 1.23785 0.97909 0.99428 0.97628 1.22006 0.95249 0.84629 0.95378 0.92122 1.47602 1.41535 1.13780 1.33577 1.21676 0.95275 0.99747 0.88231 1.18259 0.77817 0.85715 0.82116 1.90555 1.52187 1.76665 1.31213 1.21497 1.23356 0.98794 1.17166 0.89598 1.26818 0.93707 1.03876 0.93708 1.70190 1.18509 1.37562 1.18727 0.85272 0.78744 0.76449 0.79101 1.18124 1.20258 1.17961 1.22600 0.95621 0.95290 0.94526 1.20862 0.96593 0.92581 1.00176 1.21862 1.00711 0.98392 0.99888 1.21376 0.97632 1.00033 0.95076 1.21623 0.97983 1.01257 0.98056 0.92541 0.92304 0.89363 0.92682 0.92970 0.89590 0.87997 0.93929 0.91867 0.90593 0.92040 0.91939 0.91310 0.93208 0.93979 0.94058 0.93408 0.94447 0.92923 0.92889 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.85 6.51 71.98 0.47 1.32 16 3 O -0.38 -9.48 9.22 -148.98 -1.37 -10.85 16 4 C 0.09 2.45 3.11 31.12 0.10 2.55 16 5 H 0.10 2.33 7.86 -2.39 -0.02 2.31 16 6 C -0.15 -4.23 6.35 31.12 0.20 -4.04 16 7 C 0.13 5.13 3.32 45.52 0.15 5.28 16 8 H 0.06 2.67 7.88 -2.39 -0.02 2.65 16 9 N -0.63 -28.02 2.00 -824.73 -1.65 -29.67 16 10 C 0.09 3.36 8.67 127.77 1.11 4.47 16 11 C 0.56 31.43 5.18 86.36 0.45 31.88 16 12 O -0.62 -40.36 14.92 -4.30 -0.06 -40.42 16 13 C -0.57 -32.12 8.75 24.83 0.22 -31.90 16 14 H 0.09 4.37 5.91 -2.91 -0.02 4.36 16 15 C 0.03 1.89 5.50 85.30 0.47 2.36 16 16 N -0.82 -50.35 11.83 21.84 0.26 -50.09 16 17 Si 0.98 41.58 29.56 68.60 2.03 43.61 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 C -0.08 -2.71 0.61 -51.66 -0.03 -2.74 16 22 C -0.06 -2.27 3.90 30.60 0.12 -2.15 16 23 C -0.15 -6.23 9.19 71.98 0.66 -5.56 16 24 C -0.10 -3.80 4.76 30.59 0.15 -3.65 16 25 C -0.13 -3.80 9.45 71.98 0.68 -3.12 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.10 2.80 5.74 -2.38 -0.01 2.78 16 33 H 0.04 1.45 6.40 -2.39 -0.02 1.44 16 34 H 0.06 2.39 5.88 -2.38 -0.01 2.37 16 35 H 0.08 2.21 6.21 -2.39 -0.01 2.19 16 36 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 37 H 0.06 2.18 4.63 -2.39 -0.01 2.17 16 38 H 0.07 2.22 7.10 -2.39 -0.02 2.20 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.04 1.74 5.87 -2.39 -0.01 1.72 16 41 H 0.04 2.08 5.01 -2.39 -0.01 2.06 16 42 H 0.05 1.75 8.06 -2.39 -0.02 1.73 16 43 H 0.04 1.70 6.22 -2.38 -0.01 1.68 16 44 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.05 1.53 6.92 -2.39 -0.02 1.52 16 46 H 0.06 1.58 7.77 -2.39 -0.02 1.56 16 Total: -1.00 -72.67 345.33 5.63 -67.03 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.96 Total: 27.17 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 5.47 Total: -6.78 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.39 Total: -79.76 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -1.44 Total: -51.27 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -72.67 5.63 -67.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332079881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.955 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds