Wall clock time and date at job start Tue Mar 31 2020 05:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42891 * 109.47220 * 2 1 4 4 C 1.42900 * 114.00140 * 180.02562 * 3 2 1 5 5 H 1.08993 * 112.85129 * 18.80053 * 4 3 2 6 6 C 1.53789 * 113.68707 * 247.53387 * 4 3 2 7 7 C 1.53776 * 87.08191 * 270.87178 * 6 4 3 8 8 H 1.09000 * 113.69103 * 220.00958 * 7 6 4 9 9 N 1.46497 * 113.61473 * 89.11702 * 7 6 4 10 10 C 1.46497 * 120.00196 * 308.02318 * 9 7 6 11 11 C 1.34779 * 119.99879 * 128.29712 * 9 7 6 12 12 O 1.21685 * 119.99870 * 0.02562 * 11 9 7 13 13 C 1.46374 * 120.00147 * 179.97438 * 11 9 7 14 14 H 1.08005 * 119.99721 * 359.97438 * 13 11 9 15 15 C 1.40047 * 120.00298 * 180.02562 * 13 11 9 16 16 N 1.30669 * 119.99716 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00111 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47120 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47311 * 120.00142 * 17 15 13 20 20 H 1.48506 * 109.46992 * 240.00233 * 17 15 13 21 21 C 1.53777 * 87.08154 * 334.56592 * 7 6 4 22 22 C 1.53007 * 113.61484 * 139.97968 * 21 7 6 23 23 C 1.53004 * 109.46731 * 66.71601 * 22 21 7 24 24 C 1.52996 * 113.61940 * 270.79993 * 21 7 6 25 25 C 1.52999 * 109.47455 * 174.82259 * 24 21 7 26 26 H 1.09005 * 109.47300 * 59.99965 * 1 2 3 27 27 H 1.09007 * 109.47300 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47091 * 299.99583 * 1 2 3 29 29 H 1.09005 * 109.46712 * 240.00107 * 2 1 3 30 30 H 1.08995 * 109.47092 * 120.00543 * 2 1 3 31 31 H 1.09004 * 113.60946 * 156.31937 * 6 4 3 32 32 H 1.08999 * 113.61230 * 25.42221 * 6 4 3 33 33 H 1.09003 * 109.46688 * 82.07608 * 10 9 7 34 34 H 1.08993 * 109.47465 * 202.07919 * 10 9 7 35 35 H 1.08999 * 109.46814 * 322.08143 * 10 9 7 36 36 H 0.97001 * 119.99867 * 180.02562 * 16 15 13 37 37 H 1.08990 * 109.47325 * 186.71691 * 22 21 7 38 38 H 1.09000 * 109.46796 * 306.72143 * 22 21 7 39 39 H 1.09006 * 109.46831 * 185.01842 * 23 22 21 40 40 H 1.08994 * 109.47315 * 305.01604 * 23 22 21 41 41 H 1.08999 * 109.47042 * 65.02281 * 23 22 21 42 42 H 1.09001 * 109.47204 * 294.82292 * 24 21 7 43 43 H 1.09000 * 109.46792 * 54.82208 * 24 21 7 44 44 H 1.09002 * 109.47426 * 65.08784 * 25 24 21 45 45 H 1.08997 * 109.47488 * 185.09091 * 25 24 21 46 46 H 1.09005 * 109.46955 * 305.08902 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 1 3.9277 0.5457 -0.3246 6 6 4.0048 2.0451 1.3007 7 6 3.8416 3.4319 0.6566 8 1 4.6695 4.1105 0.8624 9 7 2.5321 4.0418 0.9003 10 6 1.3086 3.2921 0.6050 11 6 2.4530 5.2946 1.3909 12 8 3.4693 5.9193 1.6310 13 6 1.1446 5.9042 1.6338 14 1 0.2426 5.3502 1.4195 15 6 1.0623 7.2062 2.1431 16 7 2.1537 7.8770 2.4009 17 14 -0.6074 7.9838 2.4538 18 1 -1.6776 7.0236 2.0821 19 1 -0.7316 8.3318 3.8921 20 1 -0.7406 9.2146 1.6335 21 6 3.9484 2.7253 -0.7050 22 6 2.9861 3.2769 -1.7590 23 6 3.3849 4.7111 -2.1126 24 6 5.3838 2.5990 -1.2193 25 6 5.3933 1.7735 -2.5074 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.0430 1.7678 1.4834 32 1 3.3648 1.8890 2.1691 33 1 1.0845 2.6213 1.4344 34 1 0.4809 3.9876 0.4664 35 1 1.4502 2.7097 -0.3053 36 1 2.0967 8.7787 2.7540 37 1 3.0321 2.6559 -2.6535 38 1 1.9705 3.2693 -1.3631 39 1 2.6487 5.1349 -2.7958 40 1 3.4252 5.3116 -1.2039 41 1 4.3646 4.7085 -2.5904 42 1 5.7861 3.5917 -1.4209 43 1 5.9973 2.1044 -0.4662 44 1 4.8552 2.3116 -3.2878 45 1 6.4227 1.6069 -2.8246 46 1 4.9088 0.8138 -2.3275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332079882.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:37 Heat of formation + Delta-G solvation = -21.608292 kcal Electronic energy + Delta-G solvation = -25096.319790 eV Core-core repulsion = 21795.830007 eV Total energy + Delta-G solvation = -3300.489783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81612 -37.05790 -36.35704 -33.44630 -32.40769 -32.34708 -30.96891 -30.44845 -26.45505 -25.99211 -25.14530 -23.77141 -23.01552 -22.48537 -20.90904 -19.32607 -17.46315 -16.55298 -16.25809 -15.98579 -15.50717 -15.17768 -14.77224 -14.44154 -14.22154 -13.85500 -13.46584 -12.98553 -12.86766 -12.57988 -12.37739 -12.28018 -11.94341 -11.83110 -11.70360 -11.52594 -11.42340 -11.37394 -11.06173 -10.99290 -10.97096 -10.67761 -10.55306 -10.28784 -10.00375 -9.97160 -9.73002 -9.40250 -9.09028 -8.99659 -8.77221 -7.42847 -6.93597 -6.11805 -4.55433 3.16138 3.24512 3.28758 3.78832 4.14436 4.60049 4.64097 4.86303 4.94960 5.16107 5.22178 5.28051 5.32241 5.37378 5.44523 5.47320 5.63126 5.66852 5.74298 5.79431 5.96103 6.00259 6.04089 6.04981 6.08548 6.16558 6.19844 6.23221 6.27956 6.39080 6.42406 6.51748 6.62962 6.69986 6.73836 6.85547 6.94104 7.06128 7.26359 7.51094 7.59847 7.83130 8.28701 8.52487 9.10558 9.58682 10.66735 10.87002 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.006251 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.190080 B = 4477.964671 C = 5294.993287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.023 3.977 3 O -0.319 6.319 4 C 0.061 3.939 5 H 0.064 0.936 6 C -0.178 4.178 7 C 0.156 3.844 8 H 0.094 0.906 9 N -0.618 5.618 10 C 0.072 3.928 11 C 0.559 3.441 12 O -0.581 6.581 13 C -0.541 4.541 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.769 5.769 17 Si 0.903 3.097 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.095 4.095 22 C -0.116 4.116 23 C -0.147 4.147 24 C -0.095 4.095 25 C -0.148 4.148 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.026 0.974 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.266 0.734 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -14.618 -7.721 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.052 4.052 3 O -0.239 6.239 4 C 0.004 3.996 5 H 0.082 0.918 6 C -0.217 4.217 7 C 0.049 3.951 8 H 0.112 0.888 9 N -0.353 5.353 10 C -0.069 4.069 11 C 0.365 3.635 12 O -0.464 6.464 13 C -0.578 4.578 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.398 5.398 17 Si 0.728 3.272 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.097 4.097 22 C -0.153 4.153 23 C -0.205 4.205 24 C -0.132 4.132 25 C -0.205 4.205 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.912 -13.926 -7.497 15.842 hybrid contribution -0.724 -0.021 0.281 0.777 sum 0.188 -13.948 -7.216 15.705 Atomic orbital electron populations 1.21719 0.94148 1.01587 1.03183 1.22695 0.95663 0.87593 0.99280 1.89200 1.19029 1.21562 1.94112 1.23188 0.82663 0.96943 0.96836 0.91759 1.23915 1.00518 0.99315 0.97981 1.21344 0.89726 0.92392 0.91616 0.88805 1.47529 1.02727 1.16076 1.68996 1.22703 0.87860 0.94704 1.01617 1.18232 0.90644 0.78197 0.76401 1.90581 1.37835 1.61686 1.56309 1.21054 0.91835 0.99466 1.45435 0.90952 1.25722 0.97106 0.96966 0.93364 1.70041 1.28080 1.09774 1.31878 0.86393 0.83106 0.79394 0.78335 1.18780 1.20266 1.20245 1.22656 0.95165 0.95386 0.96494 1.21770 1.00869 0.95804 0.96815 1.21708 0.99498 0.97107 1.02158 1.21207 0.94408 1.00760 0.96865 1.21766 1.00879 0.99874 0.97996 0.92012 0.92014 0.91700 0.94181 0.93935 0.89846 0.90905 0.95502 0.92014 0.86106 0.92348 0.93426 0.88884 0.93815 0.91043 0.94071 0.91092 0.92056 0.92416 0.93220 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 37.16 0.38 -1.16 16 2 C 0.02 0.27 6.50 37.16 0.24 0.51 16 3 O -0.32 -4.60 3.82 -35.23 -0.13 -4.73 16 4 C 0.06 0.87 3.67 -25.91 -0.09 0.78 16 5 H 0.06 0.80 7.29 -51.93 -0.38 0.42 16 6 C -0.18 -2.91 7.16 -25.92 -0.19 -3.10 16 7 C 0.16 3.09 3.28 -67.12 -0.22 2.87 16 8 H 0.09 2.13 7.12 -51.93 -0.37 1.76 16 9 N -0.62 -14.12 2.24 -174.67 -0.39 -14.51 16 10 C 0.07 1.42 7.13 59.85 0.43 1.85 16 11 C 0.56 15.99 7.11 -12.99 -0.09 15.89 16 12 O -0.58 -18.81 14.47 5.20 0.08 -18.74 16 13 C -0.54 -15.40 8.76 -35.63 -0.31 -15.72 16 14 H 0.07 1.92 5.83 -52.48 -0.31 1.61 16 15 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 16 N -0.77 -23.26 11.83 55.55 0.66 -22.61 16 17 Si 0.90 20.45 29.56 -169.99 -5.02 15.42 16 18 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 C -0.10 -1.48 0.49 -153.70 -0.08 -1.55 16 22 C -0.12 -1.85 4.31 -26.73 -0.12 -1.97 16 23 C -0.15 -2.60 9.50 37.16 0.35 -2.24 16 24 C -0.09 -1.25 4.92 -26.73 -0.13 -1.39 16 25 C -0.15 -1.63 9.27 37.16 0.34 -1.29 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.19 7.62 -51.93 -0.40 0.80 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.03 0.52 7.54 -51.93 -0.39 0.13 16 34 H 0.06 1.30 5.67 -51.93 -0.29 1.00 16 35 H 0.12 2.13 1.82 -58.41 -0.11 2.03 16 36 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 37 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 38 H 0.09 1.62 3.94 -51.93 -0.20 1.42 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.58 6.66 -51.93 -0.35 1.23 16 41 H 0.04 0.65 7.24 -51.93 -0.38 0.27 16 42 H 0.07 1.01 7.30 -51.93 -0.38 0.63 16 43 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 44 H 0.06 0.65 6.83 -51.93 -0.35 0.30 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.53 7.49 -51.93 -0.39 0.14 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -32.95 340.77 -6.79 -39.73 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.53 Total: 4.43 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 0.42 Total: -4.14 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.27 Total: -37.12 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.06 Total: -23.47 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.95 -6.79 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332079882.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.127 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds