Wall clock time and date at job start Tue Mar 31 2020 05:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47531 * 2 1 4 4 C 1.42896 * 114.00044 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.85411 * 338.30665 * 4 3 2 6 6 C 1.53782 * 113.61186 * 109.50770 * 4 3 2 7 7 C 1.53776 * 87.08295 * 89.11672 * 6 4 3 8 8 H 1.09008 * 113.61170 * 270.79872 * 7 6 4 9 9 N 1.46502 * 113.61787 * 139.97940 * 7 6 4 10 10 C 1.46496 * 119.99632 * 354.49314 * 9 7 6 11 11 C 1.34777 * 120.00061 * 174.49072 * 9 7 6 12 12 O 1.21685 * 119.99972 * 359.97438 * 11 9 7 13 13 C 1.46377 * 119.99760 * 179.72808 * 11 9 7 14 14 H 1.07993 * 119.99711 * 0.27243 * 13 11 9 15 15 C 1.40051 * 119.99755 * 180.27695 * 13 11 9 16 16 N 1.30668 * 120.00091 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99763 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47030 * 89.99918 * 17 15 13 19 19 H 1.48501 * 109.46796 * 209.99839 * 17 15 13 20 20 H 1.48505 * 109.47157 * 329.99534 * 17 15 13 21 21 C 1.53781 * 87.17453 * 25.38684 * 7 6 4 22 22 C 1.53003 * 113.61199 * 89.16082 * 21 7 6 23 23 C 1.53000 * 109.47238 * 65.66823 * 22 21 7 24 24 C 1.53002 * 113.61467 * 220.06181 * 21 7 6 25 25 C 1.53008 * 109.46897 * 174.62518 * 24 21 7 26 26 H 1.08994 * 109.47167 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47253 * 300.00571 * 1 2 3 28 28 H 1.09008 * 109.46659 * 60.00043 * 1 2 3 29 29 H 1.08996 * 109.47253 * 239.99429 * 2 1 3 30 30 H 1.09008 * 109.46659 * 119.99957 * 2 1 3 31 31 H 1.08997 * 113.61352 * 334.56586 * 6 4 3 32 32 H 1.09001 * 113.68707 * 203.67314 * 6 4 3 33 33 H 1.08996 * 109.47276 * 269.64455 * 10 9 7 34 34 H 1.08996 * 109.47362 * 29.65064 * 10 9 7 35 35 H 1.08999 * 109.47061 * 149.64993 * 10 9 7 36 36 H 0.96998 * 119.99997 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.47136 * 185.66809 * 22 21 7 38 38 H 1.08999 * 109.47236 * 305.66708 * 22 21 7 39 39 H 1.08999 * 109.47316 * 45.38549 * 23 22 21 40 40 H 1.08999 * 109.47168 * 165.38737 * 23 22 21 41 41 H 1.09004 * 109.47192 * 285.38568 * 23 22 21 42 42 H 1.09000 * 109.47335 * 294.62044 * 24 21 7 43 43 H 1.08993 * 109.47352 * 54.62636 * 24 21 7 44 44 H 1.09001 * 109.46902 * 185.86108 * 25 24 21 45 45 H 1.09002 * 109.46680 * 305.86249 * 25 24 21 46 46 H 1.08996 * 109.46742 * 65.86238 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.9264 0.5630 0.3722 6 6 4.0084 1.9774 -1.3274 7 6 3.8428 3.3955 -0.7563 8 1 2.8692 3.8393 -0.9649 9 7 4.9567 4.2913 -1.0771 10 6 6.1390 3.7713 -1.7683 11 6 4.8938 5.5938 -0.7362 12 8 3.9115 6.0257 -0.1625 13 6 6.0094 6.4875 -1.0515 14 1 6.8810 6.1041 -1.5610 15 6 5.9464 7.8396 -0.6921 16 7 4.8917 8.3035 -0.0759 17 14 7.3704 8.9800 -1.0938 18 1 7.1590 9.5827 -2.4343 19 1 7.4456 10.0563 -0.0734 20 1 8.6387 8.2075 -1.0927 21 6 3.9443 2.7623 0.6414 22 6 5.3779 2.6632 1.1666 23 6 5.9381 4.0696 1.3887 24 6 2.9772 3.3681 1.6605 25 6 3.0617 2.5847 2.9721 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 3.3711 1.7763 -2.1885 32 1 5.0473 1.6924 -1.4939 33 1 6.8695 3.4321 -1.0339 34 1 5.8493 2.9357 -2.4054 35 1 6.5781 4.5594 -2.3801 36 1 4.8482 9.2399 0.1733 37 1 5.3823 2.1172 2.1100 38 1 5.9958 2.1367 0.4393 39 1 5.1951 4.6797 1.9024 40 1 6.8413 4.0092 1.9959 41 1 6.1769 4.5218 0.4261 42 1 3.2450 4.4091 1.8413 43 1 1.9603 3.3168 1.2716 44 1 2.3007 2.9487 3.6624 45 1 2.8961 1.5257 2.7740 46 1 4.0486 2.7217 3.4141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332079883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:40 Heat of formation + Delta-G solvation = -51.513343 kcal Electronic energy + Delta-G solvation = -24891.913297 eV Core-core repulsion = 21590.126734 eV Total energy + Delta-G solvation = -3301.786563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.46846 -37.52738 -36.04742 -33.51881 -32.46363 -32.35351 -30.67128 -30.34461 -26.61093 -26.08096 -24.79506 -23.60839 -23.02734 -22.39590 -20.65028 -19.39990 -17.63417 -16.42468 -16.11888 -15.68697 -15.53317 -15.47860 -15.04441 -14.34673 -13.94547 -13.80455 -13.09619 -12.80238 -12.66370 -12.47069 -12.38202 -12.12849 -12.04451 -11.80301 -11.65805 -11.38453 -11.29274 -11.26301 -11.06448 -10.94810 -10.88395 -10.71227 -10.43953 -10.28644 -10.12873 -10.05481 -9.84959 -9.58181 -9.49549 -9.00292 -8.79330 -7.48033 -6.96648 -6.13915 -4.59265 3.15541 3.23018 3.25427 3.72169 4.12249 4.61128 4.65033 4.86682 4.93891 5.08869 5.21370 5.28467 5.33938 5.40293 5.47205 5.63648 5.67314 5.83498 5.84434 5.87521 5.89171 5.95893 6.03056 6.04730 6.08575 6.11783 6.19907 6.38224 6.42894 6.48130 6.57820 6.60327 6.64642 6.72958 6.86772 6.93834 7.02451 7.20921 7.48477 7.49850 7.54608 7.69361 8.20104 8.43120 9.07246 9.51528 10.63913 10.83948 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.005055 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.970501 B = 5537.886384 C = 5679.787714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.358 6.358 4 C 0.072 3.928 5 H 0.066 0.934 6 C -0.172 4.172 7 C 0.163 3.837 8 H 0.092 0.908 9 N -0.637 5.637 10 C 0.092 3.908 11 C 0.566 3.434 12 O -0.569 6.569 13 C -0.547 4.547 14 H 0.070 0.930 15 C 0.090 3.910 16 N -0.766 5.766 17 Si 0.901 3.099 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.080 4.080 22 C -0.082 4.082 23 C -0.169 4.169 24 C -0.099 4.099 25 C -0.142 4.142 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.267 0.733 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.029 0.971 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.158 -15.066 0.385 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.277 6.277 4 C 0.013 3.987 5 H 0.084 0.916 6 C -0.210 4.210 7 C 0.058 3.942 8 H 0.110 0.890 9 N -0.375 5.375 10 C -0.052 4.052 11 C 0.372 3.628 12 O -0.451 6.451 13 C -0.584 4.584 14 H 0.088 0.912 15 C -0.130 4.130 16 N -0.395 5.395 17 Si 0.726 3.274 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.189 1.189 21 C -0.082 4.082 22 C -0.119 4.119 23 C -0.226 4.226 24 C -0.137 4.137 25 C -0.200 4.200 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.929 -14.479 0.779 14.628 hybrid contribution 0.957 0.179 -0.254 1.006 sum -0.972 -14.300 0.525 14.342 Atomic orbital electron populations 1.21730 0.94046 1.01769 1.03239 1.22450 0.95340 0.84621 0.99528 1.87935 1.20028 1.25198 1.94491 1.23090 0.80972 0.97803 0.96814 0.91577 1.23869 1.01358 0.98150 0.97617 1.21994 0.92354 0.87489 0.92413 0.89006 1.48048 1.16691 1.09697 1.63023 1.21533 0.88853 0.98785 0.96006 1.17992 0.87901 0.78536 0.78393 1.90610 1.34844 1.74302 1.45320 1.21026 1.03272 0.93356 1.40740 0.91185 1.25679 0.95737 0.98477 0.93094 1.70014 1.26402 1.14322 1.28712 0.86480 0.82217 0.80096 0.78623 1.19867 1.20559 1.18939 1.22623 0.95354 0.93415 0.96769 1.21126 0.93223 0.98645 0.98942 1.22313 0.99175 0.95926 1.05194 1.21244 0.98849 1.00141 0.93435 1.21726 1.00734 0.99535 0.97957 0.91530 0.91840 0.91869 0.93822 0.93805 0.91230 0.88852 0.94822 0.93690 0.91205 0.92252 0.93271 0.93041 0.92435 0.95209 0.87593 0.90525 0.91703 0.93693 0.93848 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.11 16 2 C 0.06 0.66 6.51 37.16 0.24 0.90 16 3 O -0.36 -5.42 8.90 -35.23 -0.31 -5.74 16 4 C 0.07 1.07 3.55 -25.83 -0.09 0.98 16 5 H 0.07 0.87 7.86 -51.93 -0.41 0.47 16 6 C -0.17 -2.65 6.37 -25.92 -0.16 -2.82 16 7 C 0.16 3.22 3.27 -67.12 -0.22 3.00 16 8 H 0.09 2.11 7.94 -51.92 -0.41 1.70 16 9 N -0.64 -13.91 1.64 -174.67 -0.29 -14.20 16 10 C 0.09 1.66 8.19 59.84 0.49 2.15 16 11 C 0.57 15.34 5.10 -12.99 -0.07 15.27 16 12 O -0.57 -17.61 14.66 5.20 0.08 -17.53 16 13 C -0.55 -14.87 8.17 -35.63 -0.29 -15.16 16 14 H 0.07 1.75 6.01 -52.49 -0.32 1.44 16 15 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 16 N -0.77 -22.55 11.83 55.55 0.66 -21.90 16 17 Si 0.90 19.95 29.56 -169.99 -5.02 14.93 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 C -0.08 -1.40 0.54 -153.60 -0.08 -1.48 16 22 C -0.08 -1.39 4.39 -26.73 -0.12 -1.51 16 23 C -0.17 -3.45 8.23 37.16 0.31 -3.15 16 24 C -0.10 -1.87 4.84 -26.73 -0.13 -2.00 16 25 C -0.14 -2.21 9.25 37.16 0.34 -1.87 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.31 5.54 -51.93 -0.29 1.02 16 33 H 0.03 0.57 6.27 -51.93 -0.33 0.25 16 34 H 0.04 0.68 5.94 -51.93 -0.31 0.37 16 35 H 0.07 1.31 6.12 -51.93 -0.32 0.99 16 36 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 37 H 0.05 0.76 6.53 -51.93 -0.34 0.42 16 38 H 0.05 0.81 6.29 -51.93 -0.33 0.48 16 39 H 0.06 1.34 6.46 -51.93 -0.34 1.00 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.11 2.39 2.38 -51.93 -0.12 2.27 16 42 H 0.08 1.74 6.62 -51.93 -0.34 1.40 16 43 H 0.06 1.26 7.16 -51.93 -0.37 0.89 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.62 7.92 -51.93 -0.41 0.20 16 46 H 0.05 0.76 6.86 -51.93 -0.36 0.40 16 LS Contribution 341.39 15.07 5.14 5.14 Total: -1.00 -31.77 341.39 -6.74 -38.51 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.50 Total: 5.21 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 0.51 Total: -4.42 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.37 Total: -36.09 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.24 Total: -23.27 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.77 -6.74 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332079883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.008 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds