Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46839 * 111.00222 * 294.21135 * 12 11 10 14 14 C 1.53034 * 109.52552 * 174.16216 * 13 12 11 15 15 C 1.53123 * 109.28182 * 59.17780 * 14 13 12 16 16 O 1.42895 * 109.57737 * 182.41149 * 15 14 13 17 17 C 1.42902 * 113.99965 * 269.71243 * 16 15 14 18 18 H 1.09003 * 110.45572 * 27.39807 * 17 16 15 19 19 C 1.54507 * 110.51160 * 150.00134 * 17 16 15 20 20 C 1.54475 * 104.06291 * 118.64600 * 19 17 16 21 21 O 1.44423 * 104.80315 * 23.97997 * 20 19 17 22 22 C 1.44424 * 105.27682 * 319.48948 * 21 20 19 23 23 C 1.53120 * 109.16070 * 302.35293 * 15 14 13 24 24 C 1.46849 * 110.99649 * 169.99929 * 12 11 10 25 25 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 27 27 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 28 28 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 29 29 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 31 31 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 32 32 H 1.09006 * 109.46266 * 294.17473 * 13 12 11 33 33 H 1.09002 * 109.46276 * 54.14664 * 13 12 11 34 34 H 1.09006 * 109.50444 * 299.24199 * 14 13 12 35 35 H 1.09002 * 109.53860 * 179.13912 * 14 13 12 36 36 H 1.09005 * 109.51783 * 62.25186 * 15 14 13 37 37 H 1.09002 * 110.51543 * 237.29421 * 19 17 16 38 38 H 1.09003 * 110.50778 * 0.02562 * 19 17 16 39 39 H 1.08999 * 110.37232 * 142.81481 * 20 19 17 40 40 H 1.09004 * 110.37607 * 265.14964 * 20 19 17 41 41 H 1.09000 * 110.36909 * 281.68080 * 22 21 20 42 42 H 1.08994 * 110.37598 * 159.34307 * 22 21 20 43 43 H 1.09005 * 109.50142 * 297.71204 * 23 15 14 44 44 H 1.08993 * 109.53791 * 177.61458 * 23 15 14 45 45 H 1.08991 * 109.46839 * 305.85721 * 24 12 11 46 46 H 1.09001 * 109.46094 * 65.83266 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 7 6.0412 -4.0216 0.0009 13 6 5.6876 -4.7041 1.2520 14 6 6.0831 -6.1795 1.1592 15 6 7.5898 -6.2842 0.9071 16 8 7.9570 -7.6577 0.7635 17 6 8.3223 -8.2930 1.9902 18 1 7.8204 -7.8146 2.8313 19 6 7.9816 -9.7993 1.9422 20 6 9.3487 -10.4989 2.1098 21 8 10.1779 -9.5306 2.7885 22 6 9.8548 -8.2607 2.1812 23 6 7.9388 -5.5243 -0.3756 24 6 7.4893 -4.0679 -0.2384 25 1 -0.4849 0.8401 -0.0004 26 1 3.8752 -0.6797 0.8895 27 1 3.8746 -0.6808 -0.8905 28 1 3.6579 -3.1513 -0.8880 29 1 3.6586 -3.1495 0.8919 30 1 5.9142 -2.1238 -0.8908 31 1 5.9156 -2.1217 0.8892 32 1 6.2175 -4.2376 2.0825 33 1 4.6130 -4.6259 1.4172 34 1 5.5432 -6.6501 0.3374 35 1 5.8346 -6.6830 2.0935 36 1 8.1307 -5.8484 1.7472 37 1 7.3132 -10.0661 2.7608 38 1 7.5350 -10.0594 0.9825 39 1 9.2427 -11.3988 2.7156 40 1 9.7715 -10.7440 1.1355 41 1 10.3553 -8.1626 1.2179 42 1 10.1377 -7.4412 2.8419 43 1 7.4279 -5.9845 -1.2215 44 1 9.0159 -5.5591 -0.5383 45 1 7.7234 -3.5276 -1.1555 46 1 8.0107 -3.6045 0.5992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336724721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = -103.754978 kcal Electronic energy + Delta-G solvation = -22520.673874 eV Core-core repulsion = 19216.621944 eV Total energy + Delta-G solvation = -3304.051931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.20196 -39.09857 -37.17651 -34.39806 -32.70192 -31.57784 -31.01155 -30.54143 -28.98214 -26.81856 -24.01812 -23.61256 -22.96331 -21.75348 -21.45996 -19.94610 -19.87719 -17.64333 -16.90871 -16.71863 -16.02778 -15.79178 -15.38824 -15.16899 -14.53347 -14.29944 -14.25397 -14.07267 -13.85639 -13.51670 -13.13434 -12.74567 -12.63764 -12.35202 -12.29023 -11.97075 -11.78410 -11.64467 -11.35628 -11.26494 -11.11586 -10.97861 -10.93980 -10.68902 -10.55956 -10.26329 -9.91987 -9.72121 -9.59525 -9.53636 -9.15929 -8.52549 -8.17192 -6.02948 -4.00608 3.14534 3.30928 3.38116 3.41534 3.68518 3.99589 4.14970 4.36582 4.45996 4.53452 4.61126 4.68827 4.80651 4.84892 4.92637 5.09642 5.20885 5.26017 5.29421 5.30894 5.31079 5.38069 5.43450 5.48395 5.53792 5.55097 5.63249 5.72887 5.76429 5.89132 5.98849 6.04830 6.15340 6.19202 6.30458 6.54817 6.57225 6.91675 6.98168 7.23527 7.24660 7.36541 7.47445 7.81643 8.56369 9.02675 9.59698 11.10628 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.043242 B = 0.002537 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.367940 B =11031.937283 C =11349.328693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.098 4.098 11 C 0.054 3.946 12 N -0.538 5.538 13 C 0.054 3.946 14 C -0.136 4.136 15 C 0.089 3.911 16 O -0.367 6.367 17 C 0.056 3.944 18 H 0.077 0.923 19 C -0.156 4.156 20 C 0.045 3.955 21 O -0.374 6.374 22 C 0.024 3.976 23 C -0.111 4.111 24 C 0.057 3.943 25 H 0.262 0.738 26 H 0.013 0.987 27 H 0.011 0.989 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.715 -17.534 3.795 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.136 4.136 11 C -0.073 4.073 12 N -0.263 5.263 13 C -0.074 4.074 14 C -0.174 4.174 15 C 0.031 3.969 16 O -0.286 6.286 17 C -0.003 4.003 18 H 0.095 0.905 19 C -0.194 4.194 20 C -0.031 4.031 21 O -0.293 6.293 22 C -0.053 4.053 23 C -0.149 4.149 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.029 0.971 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 20.488 -17.795 3.408 27.350 hybrid contribution 0.533 1.576 0.749 1.824 sum 21.020 -16.219 4.157 26.873 Atomic orbital electron populations 1.69923 1.06287 1.26813 1.51353 1.25050 0.94744 0.99178 0.94674 0.86763 0.80290 0.83641 0.78476 1.20299 1.21450 1.19119 1.21146 0.89514 0.94439 1.50496 0.91036 1.19555 0.97176 0.92346 0.96060 1.21484 0.90921 0.99508 1.01637 1.22310 0.98099 0.86693 1.00202 1.61981 1.12476 1.17200 1.34627 1.22092 1.02175 0.92942 0.90146 1.22098 0.95841 0.96889 1.02588 1.22289 0.94951 0.81367 0.98286 1.87985 1.86716 1.24410 1.29504 1.23493 0.94649 0.94034 0.88081 0.90510 1.23034 0.98489 0.93535 1.04298 1.23425 0.89136 0.92890 0.97699 1.89142 1.63358 1.16980 1.59771 1.23962 0.94977 0.87232 0.99176 1.21640 1.01000 0.94610 0.97620 1.22038 0.88475 0.95640 1.00934 0.92790 0.96919 0.97070 0.91931 0.92862 0.91109 0.95369 0.95269 0.89277 0.89987 0.91723 0.92576 0.89770 0.88904 0.88823 0.91901 0.91101 0.88931 0.90018 0.91221 0.90155 0.95221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -14.91 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -1.93 5.08 -26.73 -0.14 -2.07 16 11 C 0.05 0.87 4.96 -3.82 -0.02 0.85 16 12 N -0.54 -7.56 4.66 -234.67 -1.09 -8.65 16 13 C 0.05 0.71 5.29 -3.84 -0.02 0.69 16 14 C -0.14 -1.51 5.72 -26.65 -0.15 -1.66 16 15 C 0.09 0.90 2.51 -26.61 -0.07 0.83 16 16 O -0.37 -3.77 9.63 -35.23 -0.34 -4.10 16 17 C 0.06 0.48 3.41 -25.17 -0.09 0.39 16 18 H 0.08 0.62 7.80 -51.93 -0.41 0.22 16 19 C -0.16 -1.14 6.90 -25.17 -0.17 -1.31 16 20 C 0.05 0.33 7.63 37.93 0.29 0.62 16 21 O -0.37 -3.65 11.65 -35.23 -0.41 -4.06 16 22 C 0.02 0.20 7.38 37.93 0.28 0.48 16 23 C -0.11 -1.13 5.75 -26.65 -0.15 -1.29 16 24 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.05 1.05 6.43 -51.93 -0.33 0.72 16 30 H 0.07 1.11 7.99 -51.93 -0.41 0.69 16 31 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 1.27 6.21 -51.93 -0.32 0.95 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.53 7.79 -51.93 -0.40 0.12 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.69 8.00 -51.93 -0.42 0.27 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 46 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -31.44 356.45 -9.73 -41.17 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -8.56 Total: -3.82 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -0.80 Total: -15.73 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.32 Total: -36.03 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.75 Total: -8.16 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.44 -9.73 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336724721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.589 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds