Wall clock time and date at job start Tue Mar 31 2020 05:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00097 * 2 1 4 4 H 1.48496 * 109.47199 * 269.99744 * 3 2 1 5 5 H 1.48503 * 109.47264 * 29.99863 * 3 2 1 6 6 H 1.48498 * 109.46878 * 149.99849 * 3 2 1 7 7 C 1.37875 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00056 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47416 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47540 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47214 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00251 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99707 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00169 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47131 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47540 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47540 * 179.97438 * 17 16 15 19 19 C 1.53175 * 109.53913 * 65.44548 * 18 17 16 20 20 C 1.53092 * 109.16179 * 176.85000 * 19 18 17 21 21 O 1.42910 * 109.41107 * 302.39040 * 20 19 18 22 22 C 1.42900 * 114.09727 * 61.16189 * 21 20 19 23 23 C 1.53090 * 109.41229 * 298.83586 * 22 21 20 24 24 H 0.97001 * 119.99928 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47496 * 60.00078 * 9 7 2 26 26 H 1.09005 * 109.47246 * 299.99836 * 9 7 2 27 27 H 1.09000 * 109.47170 * 59.99759 * 10 9 7 28 28 H 1.09005 * 109.47030 * 300.00276 * 10 9 7 29 29 H 1.08995 * 109.46736 * 60.00521 * 11 10 9 30 30 H 1.08997 * 109.47032 * 300.00248 * 11 10 9 31 31 H 0.97007 * 120.00045 * 359.97438 * 12 11 10 32 32 H 1.08995 * 109.46854 * 60.00454 * 15 13 12 33 33 H 1.08997 * 109.47397 * 299.99886 * 15 13 12 34 34 H 1.09009 * 109.47020 * 60.00053 * 16 15 13 35 35 H 1.09005 * 109.47341 * 300.00316 * 16 15 13 36 36 H 1.09005 * 109.46474 * 59.99952 * 17 16 15 37 37 H 1.09005 * 109.47030 * 300.00468 * 17 16 15 38 38 H 1.08997 * 109.61228 * 305.22843 * 18 17 16 39 39 H 1.09006 * 109.52647 * 296.75300 * 19 18 17 40 40 H 1.08998 * 109.52537 * 56.94192 * 19 18 17 41 41 H 1.08998 * 109.48147 * 182.40843 * 20 19 18 42 42 H 1.08997 * 109.48550 * 62.37144 * 20 19 18 43 43 H 1.09003 * 109.47953 * 178.86010 * 22 21 20 44 44 H 1.08995 * 109.49265 * 58.82602 * 22 21 20 45 45 H 1.09001 * 109.52724 * 297.70937 * 23 22 21 46 46 H 1.09000 * 109.52338 * 177.51272 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1006 0.0018 13 6 1.9829 -7.3713 0.0019 14 8 0.7904 -7.5929 0.0010 15 6 2.9621 -8.5168 0.0020 16 6 2.1971 -9.8418 0.0027 17 6 3.1912 -11.0048 0.0034 18 6 2.4262 -12.3298 0.0048 19 6 1.6501 -12.4746 -1.3078 20 6 0.9517 -13.8367 -1.3309 21 8 1.9247 -14.8721 -1.1780 22 6 2.6488 -14.8152 0.0527 23 6 3.4154 -13.4925 0.1313 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8533 -5.0451 -0.8886 30 1 0.8537 -5.0445 0.8913 31 1 3.3858 -5.9234 0.0014 32 1 3.5887 -8.4590 0.8919 33 1 3.5887 -8.4592 -0.8880 34 1 1.5701 -9.8998 -0.8871 35 1 1.5707 -9.8992 0.8930 36 1 3.8179 -10.9465 0.8935 37 1 3.8180 -10.9475 -0.8866 38 1 1.7307 -12.3497 0.8438 39 1 0.9052 -11.6821 -1.3800 40 1 2.3402 -12.4048 -2.1486 41 1 0.4327 -13.9631 -2.2810 42 1 0.2324 -13.8904 -0.5137 43 1 3.3524 -15.6464 0.0993 44 1 1.9518 -14.8817 0.8881 45 1 4.1411 -13.4432 -0.6804 46 1 3.9330 -13.4277 1.0884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336920213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:37 Heat of formation + Delta-G solvation = -156.399270 kcal Electronic energy + Delta-G solvation = -21416.207237 eV Core-core repulsion = 18109.872478 eV Total energy + Delta-G solvation = -3306.334758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80389 -40.29753 -37.17251 -36.64945 -35.18172 -33.71798 -32.89687 -31.98170 -29.47811 -28.12169 -25.52631 -24.57174 -24.18037 -22.31678 -22.15260 -21.06240 -20.84060 -18.56380 -17.87034 -17.12897 -17.07471 -16.90075 -16.73568 -16.39307 -16.24456 -15.68559 -15.45232 -14.99152 -14.72276 -14.51746 -14.23305 -13.88599 -13.72887 -13.56313 -13.23186 -12.79522 -12.72779 -12.66626 -12.55977 -12.43422 -12.35282 -12.20393 -11.81749 -11.68599 -11.59653 -11.59594 -11.25303 -11.16066 -11.13634 -10.78718 -10.56557 -10.38939 -10.07291 -8.20456 -6.32282 1.41276 1.42756 1.53755 1.69121 2.27237 2.42701 2.99085 3.13165 3.67432 3.77652 3.83742 3.96139 4.10851 4.15993 4.16771 4.21308 4.26156 4.34153 4.52784 4.53021 4.53873 4.66503 4.74069 4.76608 4.79667 4.86313 4.92776 4.96174 5.00255 5.04586 5.11822 5.15501 5.16215 5.21285 5.31675 5.43833 5.47772 5.52598 5.56009 5.68894 5.82784 6.20878 6.28299 6.63122 6.85378 7.32082 7.37506 8.91628 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.061799 B = 0.001881 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.969785 B =14883.807412 C =15157.250111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.718 5.718 13 C 0.499 3.501 14 O -0.596 6.596 15 C -0.130 4.130 16 C -0.103 4.103 17 C -0.104 4.104 18 C -0.091 4.091 19 C -0.152 4.152 20 C 0.056 3.944 21 O -0.407 6.407 22 C 0.052 3.948 23 C -0.146 4.146 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.417 0.583 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.156 -28.424 0.356 30.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.370 5.370 13 C 0.288 3.712 14 O -0.477 6.477 15 C -0.169 4.169 16 C -0.141 4.141 17 C -0.141 4.141 18 C -0.110 4.110 19 C -0.189 4.189 20 C -0.021 4.021 21 O -0.326 6.326 22 C -0.024 4.024 23 C -0.184 4.184 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.254 0.746 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.122 0.878 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.211 -28.604 0.224 30.373 hybrid contribution -0.109 1.528 0.146 1.539 sum 10.102 -27.076 0.370 28.901 Atomic orbital electron populations 1.70119 1.07975 1.27803 1.51651 1.26055 0.95778 1.03657 0.94769 0.85387 0.78666 0.78157 0.78460 1.19811 1.21050 1.18365 1.21683 0.93780 0.91976 1.50494 0.91445 1.18961 0.94504 0.93143 0.94974 1.21590 0.98377 0.91782 1.02141 1.21186 0.92149 0.85969 1.00296 1.46069 1.11110 1.05266 1.74582 1.21667 0.90042 0.84954 0.74542 1.90679 1.19631 1.85550 1.51863 1.21738 0.97438 0.90973 1.06753 1.21337 0.97939 0.92700 1.02092 1.21569 0.97305 0.91942 1.03286 1.21213 0.97313 0.95095 0.97351 1.22276 1.00500 0.97621 0.98543 1.22674 0.90277 0.86757 1.02342 1.87895 1.53451 1.51216 1.40072 1.22756 0.95165 0.98489 0.85970 1.22217 0.98375 0.94194 1.03568 0.92820 0.99094 0.99058 0.91311 0.91308 0.93638 0.93622 0.74639 0.86277 0.86401 0.92713 0.93012 0.90273 0.90886 0.91488 0.91006 0.91260 0.88459 0.93002 0.87822 0.92900 0.91144 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 13.29 21.45 0.28 -57.02 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.54 -30.23 9.11 25.60 0.23 -29.99 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 11 C 0.13 4.56 5.67 86.38 0.49 5.05 16 12 N -0.72 -18.99 5.56 -463.07 -2.57 -21.57 16 13 C 0.50 13.56 7.83 87.66 0.69 14.25 16 14 O -0.60 -22.29 15.98 -3.04 -0.05 -22.34 16 15 C -0.13 -2.03 5.70 29.85 0.17 -1.86 16 16 C -0.10 -1.75 4.27 30.59 0.13 -1.62 16 17 C -0.10 -1.18 4.69 30.59 0.14 -1.04 16 18 C -0.09 -1.15 2.27 -10.68 -0.02 -1.17 16 19 C -0.15 -2.18 5.10 30.68 0.16 -2.03 16 20 C 0.06 0.83 6.84 72.01 0.49 1.32 16 21 O -0.41 -7.13 10.77 -148.98 -1.60 -8.74 16 22 C 0.05 0.64 6.84 72.01 0.49 1.13 16 23 C -0.15 -1.53 5.42 30.68 0.17 -1.36 16 24 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 25 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 26 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.42 7.91 8.47 -92.70 -0.79 7.13 16 32 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.12 6.62 -2.38 -0.02 1.11 16 35 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 36 H 0.08 0.70 8.14 -2.38 -0.02 0.69 16 37 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.13 6.75 -2.38 -0.02 1.12 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -72.82 368.45 2.14 -70.69 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.14 Total: 12.82 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 3.91 Total: -19.57 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -2.29 Total: -78.58 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.65 Total: -31.08 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -72.82 2.14 -70.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336920213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.714 kcal (2) G-P(sol) polarization free energy of solvation -72.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds