Wall clock time and date at job start Tue Mar 31 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 116.99931 * 2 1 4 4 O 1.20833 * 120.00277 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00218 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47270 * 59.99651 * 5 3 2 7 7 C 1.53006 * 109.46903 * 299.99920 * 5 3 2 8 8 C 1.52995 * 109.47346 * 180.02562 * 5 3 2 9 9 C 1.53006 * 109.47017 * 179.97438 * 8 5 3 10 10 N 1.46505 * 109.46781 * 179.97438 * 9 8 5 11 11 C 1.36934 * 120.00271 * 269.99617 * 10 9 8 12 12 H 1.07997 * 119.99611 * 141.59467 * 11 10 9 13 13 C 1.38806 * 119.99912 * 321.60221 * 11 10 9 14 14 N 1.31619 * 120.00328 * 339.25655 * 13 11 10 15 15 Si 1.86804 * 119.99791 * 159.26105 * 13 11 10 16 16 H 1.48496 * 109.47253 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47152 * 119.99669 * 15 13 11 18 18 H 1.48503 * 109.46704 * 239.99685 * 15 13 11 19 19 C 1.46507 * 119.99405 * 90.00426 * 10 9 8 20 20 C 1.54271 * 110.02786 * 242.54455 * 19 10 9 21 21 C 1.54963 * 104.15763 * 217.13746 * 20 19 10 22 22 C 1.54893 * 102.77774 * 37.89144 * 21 20 19 23 23 C 1.53877 * 110.03291 * 125.33076 * 19 10 9 24 24 H 1.08999 * 109.46564 * 299.99533 * 1 2 3 25 25 H 1.08999 * 109.47402 * 60.00036 * 1 2 3 26 26 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47485 * 180.02562 * 6 5 3 28 28 H 1.09002 * 109.47170 * 300.00311 * 6 5 3 29 29 H 1.09000 * 109.47286 * 60.00349 * 6 5 3 30 30 H 1.09000 * 109.47002 * 300.00451 * 7 5 3 31 31 H 1.09005 * 109.46870 * 59.99488 * 7 5 3 32 32 H 1.08996 * 109.46951 * 179.97438 * 7 5 3 33 33 H 1.09000 * 109.47731 * 59.99553 * 8 5 3 34 34 H 1.09006 * 109.47060 * 299.99378 * 8 5 3 35 35 H 1.08997 * 109.47226 * 59.99836 * 9 8 5 36 36 H 1.08993 * 109.47119 * 299.99622 * 9 8 5 37 37 H 0.96993 * 120.00077 * 175.04271 * 14 13 11 38 38 H 1.08991 * 110.01763 * 3.93027 * 19 10 9 39 39 H 1.08998 * 110.48427 * 335.78442 * 20 19 10 40 40 H 1.08996 * 110.48441 * 98.42490 * 20 19 10 41 41 H 1.08997 * 110.71956 * 279.57501 * 21 20 19 42 42 H 1.09005 * 110.92065 * 156.29224 * 21 20 19 43 43 H 1.08997 * 110.48445 * 203.40774 * 22 21 20 44 44 H 1.09002 * 110.59990 * 80.81496 * 22 21 20 45 45 H 1.09001 * 110.02815 * 238.56886 * 23 19 10 46 46 H 1.08998 * 110.02925 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1130 0.5816 -1.2501 7 6 4.1139 0.5811 1.2484 8 6 4.0001 2.7421 0.0002 9 6 5.5281 2.8222 0.0002 10 7 5.9434 4.2271 0.0004 11 6 6.1376 4.8838 -1.1854 12 1 5.8369 5.9161 -1.2865 13 6 6.7208 4.2226 -2.2575 14 7 7.4463 3.1442 -2.0499 15 14 6.4761 4.8634 -3.9951 16 1 5.6257 6.0802 -3.9588 17 1 7.7952 5.1984 -4.5895 18 1 5.8126 3.8206 -4.8183 19 6 6.1511 4.9293 1.2693 20 6 5.1566 6.1023 1.3930 21 6 5.9732 7.2196 2.0902 22 6 7.3767 7.0666 1.4530 23 6 7.5621 5.5421 1.3079 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 5.2014 0.6383 -1.2503 28 1 3.8039 -0.4637 -1.2502 29 1 3.7229 1.0758 -2.1399 30 1 3.7244 1.0750 2.1386 31 1 3.8048 -0.4642 1.2483 32 1 5.2024 0.6378 1.2477 33 1 3.6107 3.2357 0.8906 34 1 3.6101 3.2368 -0.8894 35 1 5.9178 2.3285 -0.8900 36 1 5.9178 2.3277 0.8899 37 1 7.7940 2.6412 -2.8028 38 1 6.0205 4.2397 2.1031 39 1 4.8278 6.4292 0.4065 40 1 4.3019 5.8147 2.0051 41 1 6.0169 7.0510 3.1662 42 1 5.5546 8.2020 1.8712 43 1 8.1409 7.4830 2.1092 44 1 7.4092 7.5496 0.4764 45 1 8.1160 5.1502 2.1610 46 1 8.0924 5.3165 0.3827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338545222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:00 Heat of formation + Delta-G solvation = -89.360769 kcal Electronic energy + Delta-G solvation = -24122.101426 eV Core-core repulsion = 20818.673675 eV Total energy + Delta-G solvation = -3303.427751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.44870 -37.83975 -36.74552 -35.79614 -33.86239 -31.03857 -28.54716 -27.76760 -27.46397 -27.04646 -26.28300 -24.56089 -23.02979 -21.06720 -19.92116 -18.98180 -18.68587 -17.03230 -16.59488 -16.16938 -15.83056 -15.26340 -14.75517 -14.26326 -13.96460 -13.86962 -13.59579 -13.18746 -12.86379 -12.65348 -12.49049 -12.41487 -12.13243 -11.83408 -11.63725 -11.36840 -11.10694 -10.96527 -10.76473 -10.66603 -10.55484 -10.47975 -10.41852 -10.34258 -10.18141 -10.10714 -10.03840 -9.81759 -9.59371 -9.44913 -9.34198 -8.39277 -6.50213 -5.70048 -3.33307 2.49872 2.92645 3.37552 3.47214 3.50587 4.52501 4.92905 5.09833 5.11852 5.15948 5.24569 5.32196 5.38648 5.47712 5.49572 5.54995 5.65690 5.83947 5.92560 6.00926 6.11663 6.21445 6.30052 6.33037 6.33618 6.37901 6.42895 6.47220 6.53063 6.58054 6.63292 6.65558 6.71718 6.77992 6.85725 6.94022 7.08810 7.20765 7.29502 7.45981 7.74509 7.89862 8.02473 8.59259 9.26531 9.88604 10.47226 11.25089 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.005991 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.316175 B = 4672.817877 C = 5742.789230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.506 6.506 5 C -0.048 4.048 6 C -0.140 4.140 7 C -0.139 4.139 8 C -0.114 4.114 9 C 0.146 3.854 10 N -0.577 5.577 11 C -0.241 4.241 12 H 0.059 0.941 13 C 0.012 3.988 14 N -0.886 5.886 15 Si 0.885 3.115 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.289 1.289 19 C 0.171 3.829 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.130 4.130 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.026 0.974 37 H 0.251 0.749 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 -5.134 6.298 10.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.393 6.393 5 C -0.049 4.049 6 C -0.197 4.197 7 C -0.197 4.197 8 C -0.154 4.154 9 C 0.019 3.981 10 N -0.296 5.296 11 C -0.371 4.371 12 H 0.077 0.923 13 C -0.187 4.187 14 N -0.529 5.529 15 Si 0.715 3.285 16 H -0.202 1.202 17 H -0.218 1.218 18 H -0.216 1.216 19 C 0.063 3.937 20 C -0.175 4.175 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.060 -4.909 6.185 10.592 hybrid contribution -0.570 0.379 -0.979 1.194 sum -7.630 -4.530 5.206 10.288 Atomic orbital electron populations 1.23188 0.77464 1.03124 1.02276 1.86541 1.22561 1.34273 1.84371 1.24323 0.92432 0.80839 0.71395 1.90638 1.67177 1.36433 1.45011 1.20681 0.84987 1.00649 0.98629 1.21887 1.03381 0.99187 0.95225 1.21892 1.02750 0.99710 0.95302 1.22247 1.01359 0.89530 1.02274 1.21089 0.88558 0.86653 1.01764 1.43912 1.76591 1.08500 1.00571 1.18936 1.32158 0.97207 0.88808 0.92302 1.25091 0.96021 0.98806 0.98828 1.70071 1.33496 1.19605 1.29687 0.86505 0.77475 0.78666 0.85849 1.20195 1.21783 1.21573 1.21045 0.91749 0.92191 0.88668 1.22866 0.97853 0.96527 1.00287 1.22440 0.96578 0.98317 0.98743 1.22252 0.95751 0.97769 0.99744 1.22538 0.99116 0.93626 1.01682 0.92257 0.92192 0.88526 0.89519 0.92415 0.92438 0.92678 0.92120 0.90130 0.93068 0.91517 0.88266 0.95597 0.93889 0.93592 0.90861 0.93598 0.92783 0.93026 0.93528 0.92035 0.94216 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.23 10.37 -39.25 -0.41 -5.64 16 3 C 0.47 7.99 6.55 36.01 0.24 8.23 16 4 O -0.51 -10.05 15.73 -18.76 -0.30 -10.35 16 5 C -0.05 -0.80 0.74 -155.66 -0.11 -0.91 16 6 C -0.14 -2.25 8.05 37.16 0.30 -1.95 16 7 C -0.14 -1.98 8.05 37.16 0.30 -1.68 16 8 C -0.11 -2.28 3.88 -26.73 -0.10 -2.38 16 9 C 0.15 3.17 4.57 -4.04 -0.02 3.16 16 10 N -0.58 -13.57 2.38 -164.39 -0.39 -13.96 16 11 C -0.24 -6.25 7.75 -15.06 -0.12 -6.37 16 12 H 0.06 1.58 6.94 -52.49 -0.36 1.21 16 13 C 0.01 0.32 4.96 -17.43 -0.09 0.24 16 14 N -0.89 -24.04 11.48 55.49 0.64 -23.40 16 15 Si 0.89 21.22 29.61 -169.99 -5.03 16.19 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 C 0.17 3.54 3.42 -66.80 -0.23 3.32 16 20 C -0.14 -2.59 6.43 -25.03 -0.16 -2.75 16 21 C -0.12 -2.02 6.91 -24.70 -0.17 -2.19 16 22 C -0.12 -2.05 6.83 -25.07 -0.17 -2.23 16 23 C -0.13 -2.62 6.24 -25.61 -0.16 -2.78 16 24 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.48 6.43 -51.93 -0.33 1.15 16 28 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 32 H 0.08 1.15 6.43 -51.93 -0.33 0.82 16 33 H 0.05 1.05 8.10 -51.93 -0.42 0.62 16 34 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 35 H 0.10 2.38 3.84 -51.93 -0.20 2.19 16 36 H 0.03 0.53 6.19 -51.93 -0.32 0.21 16 37 H 0.25 6.63 8.32 -40.82 -0.34 6.29 16 38 H 0.05 0.92 7.81 -51.93 -0.41 0.51 16 39 H 0.07 1.56 6.64 -51.93 -0.34 1.21 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 2.05 7.17 -51.93 -0.37 1.67 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -28.58 357.59 -7.67 -36.26 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.14 Total: 2.37 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 0.57 Total: -6.85 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.25 Total: -37.36 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.70 Total: -15.99 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.58 -7.67 -36.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338545222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.105 kcal (2) G-P(sol) polarization free energy of solvation -28.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds