Wall clock time and date at job start Tue Mar 31 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.78489 * 2 1 4 4 C 1.53313 * 109.62282 * 120.47567 * 2 1 3 5 5 N 1.46878 * 108.34392 * 60.02761 * 4 2 1 6 6 C 1.46908 * 110.99677 * 183.32698 * 5 4 2 7 7 C 1.52999 * 109.46776 * 66.04346 * 6 5 4 8 8 O 1.42898 * 109.47174 * 65.00267 * 7 6 5 9 9 C 1.42906 * 113.99824 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46706 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.45567 * 112.34957 * 58.38163 * 5 4 2 19 19 H 1.09004 * 109.70351 * 184.76587 * 18 5 4 20 20 C 1.53807 * 111.55377 * 63.21373 * 18 5 4 21 21 C 1.54295 * 105.98336 * 213.41100 * 20 18 5 22 22 C 1.54503 * 106.31539 * 0.08829 * 21 20 18 23 23 C 1.54404 * 111.82296 * 306.72178 * 18 5 4 24 24 H 1.09002 * 112.94629 * 282.28557 * 23 18 5 25 25 O 1.42701 * 109.63029 * 239.51799 * 2 1 3 26 26 H 1.09005 * 109.46865 * 299.52556 * 1 2 3 27 27 H 1.09000 * 109.46712 * 59.51894 * 1 2 3 28 28 H 1.09001 * 109.47093 * 179.52298 * 1 2 3 29 29 H 1.08995 * 109.47590 * 180.47769 * 3 2 1 30 30 H 1.09002 * 109.46812 * 300.48202 * 3 2 1 31 31 H 1.08999 * 109.47165 * 60.47389 * 3 2 1 32 32 H 1.08998 * 109.69042 * 300.30406 * 4 2 1 33 33 H 1.09001 * 109.68280 * 179.73927 * 4 2 1 34 34 H 1.09003 * 109.47076 * 306.04661 * 6 5 4 35 35 H 1.08993 * 109.47323 * 186.04116 * 6 5 4 36 36 H 1.09002 * 109.47561 * 304.99666 * 7 6 5 37 37 H 1.09008 * 109.47150 * 184.99785 * 7 6 5 38 38 H 1.09000 * 109.47141 * 60.00107 * 9 8 7 39 39 H 1.08993 * 109.47732 * 299.99746 * 9 8 7 40 40 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 41 41 H 1.09001 * 110.14889 * 94.27805 * 20 18 5 42 42 H 1.08998 * 110.14466 * 332.53466 * 20 18 5 43 43 H 1.08997 * 110.08588 * 240.87145 * 21 20 18 44 44 H 1.09002 * 110.13755 * 119.32869 * 21 20 18 45 45 H 1.08998 * 110.58875 * 266.66497 * 22 21 20 46 46 H 1.09001 * 110.58837 * 143.75109 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0479 1.4397 0.0000 4 6 2.0449 -0.7324 1.2446 5 7 1.5441 -2.1127 1.2089 6 6 1.9389 -2.8473 2.4183 7 6 1.2407 -2.2380 3.6358 8 8 -0.1707 -2.4297 3.5209 9 6 -0.9207 -1.8948 4.6134 10 6 -2.3886 -2.1516 4.3885 11 1 -2.7159 -2.6717 3.5003 12 6 -3.3135 -1.7226 5.3166 13 7 -4.5945 -1.9472 5.1205 14 14 -2.7475 -0.8225 6.8524 15 1 -2.4866 -1.8054 7.9344 16 1 -1.5014 -0.0714 6.5548 17 1 -3.8044 0.1251 7.2886 18 6 1.9613 -2.8221 0.0082 19 1 1.4987 -3.8088 -0.0151 20 6 3.4908 -2.9695 -0.0583 21 6 3.8595 -2.9026 -1.5550 22 6 2.5310 -2.7152 -2.3213 23 6 1.5945 -2.0446 -1.2744 24 1 0.5408 -2.1340 -1.5389 25 8 2.0094 -0.6818 -1.1583 26 1 -0.3633 0.5065 0.8943 27 1 -0.3633 0.5213 -0.8857 28 1 -0.3633 -1.0276 -0.0086 29 1 3.1378 1.4338 -0.0086 30 1 1.6803 1.9580 -0.8857 31 1 1.6943 1.9530 0.8942 32 1 1.6804 -0.2324 2.1420 33 1 3.1349 -0.7370 1.2432 34 1 3.0191 -2.7804 2.5477 35 1 1.6489 -3.8933 2.3190 36 1 1.4598 -1.1714 3.6843 37 1 1.6008 -2.7245 4.5424 38 1 -0.7465 -0.8210 4.6825 39 1 -0.6054 -2.3744 5.5400 40 1 -5.2452 -1.6457 5.7737 41 1 3.7941 -3.9290 0.3607 42 1 3.9704 -2.1541 0.4833 43 1 4.3421 -3.8299 -1.8635 44 1 4.5214 -2.0567 -1.7411 45 1 2.1291 -3.6793 -2.6331 46 1 2.6738 -2.0619 -3.1820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339154751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:27 Heat of formation + Delta-G solvation = -88.140093 kcal Electronic energy + Delta-G solvation = -24219.422265 eV Core-core repulsion = 20916.047447 eV Total energy + Delta-G solvation = -3303.374818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74806 -37.20087 -36.43242 -35.39084 -32.64091 -32.20829 -29.68748 -28.26386 -27.69206 -27.19529 -26.94282 -24.74127 -21.87765 -21.59337 -21.32297 -20.17594 -18.26038 -16.90787 -16.81920 -16.35707 -15.99726 -15.55361 -15.23220 -14.70063 -14.46764 -14.30058 -13.83317 -13.58063 -13.01634 -12.93768 -12.79306 -12.60849 -12.40778 -12.15243 -11.89787 -11.78541 -11.67251 -11.50442 -11.42392 -11.29710 -11.14131 -11.01500 -10.89832 -10.67603 -10.51976 -10.38787 -10.05126 -9.83969 -9.33122 -9.13414 -8.79625 -8.41574 -8.02607 -6.08671 -4.06847 3.25451 3.32534 3.33844 3.63919 3.86646 4.37499 4.48336 4.60803 4.65402 4.79642 4.85144 5.05927 5.10155 5.22743 5.24841 5.28969 5.34029 5.40820 5.50663 5.52301 5.57832 5.64625 5.68561 5.73964 5.78864 5.80394 5.85263 5.87694 5.94147 5.97328 6.00145 6.11799 6.15696 6.19560 6.22703 6.33008 6.63267 6.64689 7.03261 7.17885 7.25982 7.42743 7.63691 8.08711 8.72089 9.04610 9.51284 11.04551 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.004301 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.551423 B = 6508.785256 C = 6813.406311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 C -0.135 4.135 4 C 0.032 3.968 5 N -0.516 5.516 6 C 0.064 3.936 7 C 0.062 3.938 8 O -0.363 6.363 9 C 0.168 3.832 10 C -0.514 4.514 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.875 3.125 15 H -0.275 1.275 16 H -0.267 1.267 17 H -0.283 1.283 18 C 0.057 3.943 19 H 0.093 0.907 20 C -0.154 4.154 21 C -0.113 4.113 22 C -0.119 4.119 23 C 0.095 3.905 24 H 0.081 0.919 25 O -0.373 6.373 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.000 1.000 39 H -0.005 1.005 40 H 0.266 0.734 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.086 1.698 -11.930 21.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.079 3.921 3 C -0.193 4.193 4 C -0.096 4.096 5 N -0.238 5.238 6 C -0.063 4.063 7 C -0.016 4.016 8 O -0.282 6.282 9 C 0.093 3.907 10 C -0.552 4.552 11 H 0.101 0.899 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.701 3.299 15 H -0.200 1.200 16 H -0.192 1.192 17 H -0.208 1.208 18 C -0.052 4.052 19 H 0.111 0.889 20 C -0.193 4.193 21 C -0.151 4.151 22 C -0.157 4.157 23 C 0.037 3.963 24 H 0.099 0.901 25 O -0.293 6.293 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.018 0.982 39 H 0.012 0.988 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.417 1.746 -12.129 21.295 hybrid contribution 1.028 0.405 1.490 1.855 sum 18.445 2.150 -10.639 21.401 Atomic orbital electron populations 1.22242 0.94118 1.04054 1.01869 1.21512 0.94394 0.91777 0.84452 1.21719 1.01275 0.93632 1.02684 1.22818 0.97261 0.89980 0.99534 1.61231 1.59985 1.01427 1.01169 1.22093 0.96058 0.98884 0.89280 1.22351 0.85473 0.98280 0.95528 1.88013 1.14035 1.80066 1.46061 1.20575 0.92654 0.92374 0.85134 1.20887 0.87739 1.37763 1.08764 0.89936 1.24761 0.94680 0.95671 0.97847 1.69880 1.00615 1.46910 1.36128 0.86873 0.78860 0.80295 0.83837 1.20017 1.19194 1.20825 1.22697 0.93328 0.98465 0.90759 0.88918 1.22744 0.97836 1.01522 0.97199 1.22069 0.97340 1.01219 0.94496 1.22629 0.95191 1.00098 0.97806 1.23180 0.97779 0.81517 0.93816 0.90086 1.87796 1.73992 1.23586 1.43945 0.91411 0.92974 0.90508 0.92321 0.91716 0.90958 0.89441 0.94373 0.94140 0.89947 0.94537 0.94207 0.98250 0.98783 0.92444 0.91905 0.91674 0.92153 0.91797 0.90339 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 8.21 37.16 0.31 -2.12 16 2 C 0.12 1.56 1.12 -90.46 -0.10 1.46 16 3 C -0.14 -1.49 8.88 37.16 0.33 -1.16 16 4 C 0.03 0.44 4.01 -3.67 -0.01 0.42 16 5 N -0.52 -7.59 3.72 -226.10 -0.84 -8.43 16 6 C 0.06 0.93 4.88 -3.82 -0.02 0.92 16 7 C 0.06 1.08 6.00 37.16 0.22 1.31 16 8 O -0.36 -8.47 10.27 -35.23 -0.36 -8.83 16 9 C 0.17 4.30 4.76 36.01 0.17 4.47 16 10 C -0.51 -15.37 9.99 -34.44 -0.34 -15.72 16 11 H 0.08 2.72 8.06 -52.49 -0.42 2.29 16 12 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 13 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 14 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.06 0.72 2.67 -67.28 -0.18 0.54 16 19 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 20 C -0.15 -1.66 5.20 -25.63 -0.13 -1.79 16 21 C -0.11 -1.08 6.65 -25.26 -0.17 -1.25 16 22 C -0.12 -1.16 6.44 -24.53 -0.16 -1.32 16 23 C 0.10 1.17 3.26 -24.58 -0.08 1.09 16 24 H 0.08 1.04 7.35 -51.93 -0.38 0.66 16 25 O -0.37 -4.98 9.37 -35.23 -0.33 -5.31 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.27 6.35 -51.93 -0.33 0.94 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.28 6.26 -51.93 -0.32 0.95 16 33 H 0.04 0.49 6.35 -51.93 -0.33 0.16 16 34 H 0.04 0.50 7.60 -51.93 -0.39 0.11 16 35 H 0.08 1.21 8.02 -51.93 -0.42 0.80 16 36 H 0.04 0.62 6.28 -51.93 -0.33 0.29 16 37 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.00 0.00 7.20 -51.93 -0.37 -0.38 16 39 H -0.01 -0.14 7.57 -51.93 -0.39 -0.53 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.76 6.04 -51.93 -0.31 0.45 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.81 346.12 -8.72 -40.54 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -8.24 Total: -1.84 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -0.27 Total: -11.14 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.07 Total: -35.50 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.69 Total: -14.14 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.81 -8.72 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339154751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.605 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds