Wall clock time and date at job start Tue Mar 31 2020 05:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48504 * 109.47075 * 269.99452 * 3 2 1 5 5 H 1.48494 * 109.47303 * 29.99930 * 3 2 1 6 6 H 1.48507 * 109.47090 * 150.00056 * 3 2 1 7 7 C 1.37882 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00386 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47340 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47166 * 179.97438 * 10 9 7 12 12 N 1.46895 * 109.47102 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00042 * 186.03259 * 12 11 10 14 14 H 1.08996 * 109.47189 * 30.62775 * 13 12 11 15 15 C 1.53002 * 109.47205 * 270.63069 * 13 12 11 16 16 C 1.52998 * 117.50237 * 134.77233 * 15 13 12 17 17 C 1.53007 * 117.49827 * 66.11483 * 15 13 12 18 18 C 1.52998 * 109.47233 * 150.63426 * 13 12 11 19 19 C 1.53002 * 109.82236 * 177.87656 * 18 13 12 20 20 O 1.42899 * 109.47004 * 179.97438 * 19 18 13 21 21 C 1.54385 * 109.82705 * 298.85488 * 18 13 12 22 22 C 1.55300 * 102.25144 * 98.15974 * 21 18 13 23 23 C 1.54946 * 100.94652 * 34.13295 * 22 21 18 24 24 O 1.43230 * 109.83136 * 56.98911 * 18 13 12 25 25 H 0.96998 * 119.99544 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47095 * 59.99069 * 9 7 2 27 27 H 1.09005 * 109.47085 * 299.99758 * 9 7 2 28 28 H 1.08994 * 109.46821 * 60.00201 * 10 9 7 29 29 H 1.08995 * 109.47268 * 299.99938 * 10 9 7 30 30 H 1.09003 * 109.47013 * 59.99650 * 11 10 9 31 31 H 1.08995 * 109.47146 * 300.00220 * 11 10 9 32 32 H 1.00895 * 111.00368 * 309.98692 * 12 11 10 33 33 H 1.09001 * 115.54975 * 280.44654 * 15 13 12 34 34 H 1.09009 * 117.49456 * 0.02562 * 16 15 13 35 35 H 1.08996 * 117.50000 * 145.01926 * 16 15 13 36 36 H 1.09002 * 117.49756 * 214.98216 * 17 15 13 37 37 H 1.09003 * 117.49419 * 359.97438 * 17 15 13 38 38 H 1.08998 * 109.47340 * 299.99686 * 19 18 13 39 39 H 1.08994 * 109.47603 * 59.99806 * 19 18 13 40 40 H 0.96699 * 114.00661 * 179.97438 * 20 19 18 41 41 H 1.09008 * 110.84469 * 216.34943 * 21 18 13 42 42 H 1.08996 * 110.84719 * 339.95953 * 21 18 13 43 43 H 1.09003 * 111.12516 * 276.21007 * 22 21 18 44 44 H 1.09001 * 111.16238 * 152.06696 * 22 21 18 45 45 H 1.09000 * 110.31125 * 204.64251 * 23 22 21 46 46 H 1.09000 * 110.31295 * 82.46787 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4347 -6.1037 0.0006 13 6 1.7400 -7.3901 -0.1430 14 1 0.8336 -7.2498 -0.7319 15 6 1.3707 -7.9275 1.2411 16 6 -0.0422 -8.4835 1.4293 17 6 0.3410 -7.1394 2.0534 18 6 2.6580 -8.3894 -0.8497 19 6 1.9620 -9.7477 -0.9563 20 8 2.8253 -10.6747 -1.6178 21 6 3.0128 -7.8684 -2.2591 22 6 4.4091 -7.2278 -2.0318 23 6 4.9955 -8.1748 -0.9546 24 8 3.8818 -8.5265 -0.1182 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 0.8531 -5.0451 -0.8886 31 1 0.8538 -5.0446 0.8913 32 1 3.1292 -5.9853 -0.7216 33 1 2.1793 -8.4122 1.7883 34 1 -0.7086 -8.4668 0.5667 35 1 -0.1633 -9.3337 2.1004 36 1 0.4720 -7.1059 3.1350 37 1 -0.0729 -6.2378 1.6018 38 1 1.7297 -10.1164 0.0428 39 1 1.0398 -9.6397 -1.5272 40 1 2.4483 -11.5592 -1.7202 41 1 3.0746 -8.6905 -2.9723 42 1 2.2918 -7.1206 -2.5890 43 1 4.3174 -6.2101 -1.6523 44 1 5.0063 -7.2522 -2.9433 45 1 5.7582 -7.6585 -0.3717 46 1 5.4141 -9.0662 -1.4218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339765885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:10 Heat of formation + Delta-G solvation = -76.481086 kcal Electronic energy + Delta-G solvation = -23627.980608 eV Core-core repulsion = 20325.111362 eV Total energy + Delta-G solvation = -3302.869246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56216 -37.57055 -36.58687 -35.31071 -33.41014 -32.17478 -31.66226 -30.25758 -26.74297 -25.69543 -24.54797 -22.56663 -22.12625 -22.03580 -20.80753 -20.32523 -19.42527 -17.73013 -16.72507 -16.20594 -16.08787 -15.70379 -15.07780 -14.95696 -14.53699 -14.44744 -14.05590 -13.71171 -13.49820 -13.20752 -12.70632 -12.61036 -12.31304 -12.06977 -11.79880 -11.67009 -11.53861 -11.24262 -11.16257 -10.93954 -10.84746 -10.77583 -10.51837 -10.45706 -10.26124 -10.02915 -9.90740 -9.66377 -9.48012 -9.24371 -9.00633 -8.32724 -8.05858 -5.97976 -3.99876 3.33242 3.39411 3.43416 3.65162 3.76649 3.91026 4.42018 4.47684 4.57864 4.62605 4.67891 4.89004 4.95739 5.06166 5.14819 5.21581 5.22658 5.26192 5.37894 5.43226 5.58233 5.61177 5.64529 5.69707 5.71187 5.79274 5.80540 5.85439 5.99829 6.04911 6.09757 6.20478 6.33478 6.46532 6.74773 6.81759 7.06307 7.15026 7.37913 7.43353 7.69757 7.72390 7.85551 8.02467 8.45975 9.07224 9.63997 11.13483 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022063 B = 0.003730 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.780282 B = 7504.347612 C = 8318.655488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.053 3.947 12 N -0.677 5.677 13 C 0.119 3.881 14 H 0.051 0.949 15 C -0.126 4.126 16 C -0.192 4.192 17 C -0.172 4.172 18 C 0.114 3.886 19 C 0.076 3.924 20 O -0.567 6.567 21 C -0.151 4.151 22 C -0.160 4.160 23 C 0.058 3.942 24 O -0.350 6.350 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.020 0.980 31 H 0.075 0.925 32 H 0.338 0.662 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.376 0.624 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 -22.167 -3.112 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.075 4.075 12 N -0.313 5.313 13 C 0.008 3.992 14 H 0.069 0.931 15 C -0.145 4.145 16 C -0.229 4.229 17 C -0.209 4.209 18 C 0.074 3.926 19 C -0.003 4.003 20 O -0.371 6.371 21 C -0.188 4.188 22 C -0.198 4.198 23 C -0.019 4.019 24 O -0.268 6.268 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.093 0.907 32 H 0.162 0.838 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.223 0.777 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.875 -21.610 -2.238 22.068 hybrid contribution -0.333 0.642 -1.133 1.344 sum 3.542 -20.968 -3.371 21.530 Atomic orbital electron populations 1.69969 1.06053 1.26524 1.51067 1.25028 0.94845 0.99239 0.95396 0.86601 0.79908 0.83500 0.78045 1.20732 1.21236 1.19834 1.21257 0.93048 0.91060 1.50290 0.92696 1.19052 0.93978 0.91337 0.97081 1.21645 0.99228 0.93147 1.00603 1.22397 0.94427 0.90736 0.99987 1.60576 1.16205 1.00124 1.54382 1.21287 0.94489 0.89607 0.93768 0.93102 1.22135 0.91968 1.03107 0.97328 1.23052 0.98426 0.98000 1.03467 1.23023 1.03312 0.95043 0.99535 1.22202 0.86839 0.92775 0.90789 1.22445 0.91715 0.89415 0.96703 1.86472 1.45628 1.24019 1.81016 1.23194 0.97558 1.01167 0.96906 1.23410 0.96182 1.00081 1.00139 1.23289 0.89855 0.96916 0.91813 1.88451 1.13124 1.88634 1.36640 0.93063 0.96907 0.96520 0.92425 0.93947 0.96155 0.90672 0.83774 0.87220 0.89344 0.89128 0.88995 0.88213 0.92181 0.93050 0.77740 0.89332 0.90436 0.89663 0.89825 0.89832 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.11 -2.29 5.35 -26.73 -0.14 -2.43 16 11 C 0.05 0.93 5.36 -3.83 -0.02 0.91 16 12 N -0.68 -10.44 6.18 -106.73 -0.66 -11.10 16 13 C 0.12 1.56 1.51 -67.71 -0.10 1.46 16 14 H 0.05 0.67 7.45 -51.93 -0.39 0.29 16 15 C -0.13 -1.61 3.96 -90.62 -0.36 -1.97 16 16 C -0.19 -2.06 9.85 -26.70 -0.26 -2.32 16 17 C -0.17 -2.23 9.60 -26.69 -0.26 -2.48 16 18 C 0.11 1.36 0.53 -89.89 -0.05 1.32 16 19 C 0.08 0.76 5.88 37.16 0.22 0.98 16 20 O -0.57 -5.45 12.67 -44.84 -0.57 -6.02 16 21 C -0.15 -1.66 5.53 -24.79 -0.14 -1.80 16 22 C -0.16 -1.71 6.53 -24.48 -0.16 -1.87 16 23 C 0.06 0.66 7.78 38.18 0.30 0.96 16 24 O -0.35 -4.77 9.84 -44.84 -0.44 -5.21 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.02 0.36 7.90 -51.93 -0.41 -0.05 16 31 H 0.08 1.36 5.23 -51.93 -0.27 1.08 16 32 H 0.34 5.00 4.19 -39.29 -0.16 4.84 16 33 H 0.11 1.51 7.76 -51.93 -0.40 1.11 16 34 H 0.09 0.89 8.09 -51.92 -0.42 0.47 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.43 5.76 -51.93 -0.30 1.13 16 38 H 0.06 0.60 6.93 -51.93 -0.36 0.24 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.38 1.88 9.12 45.56 0.42 2.29 16 41 H 0.09 0.93 7.22 -51.92 -0.37 0.56 16 42 H 0.08 0.86 7.82 -51.93 -0.41 0.46 16 43 H 0.09 1.00 5.80 -51.93 -0.30 0.70 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -32.18 354.98 -9.28 -41.45 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.15 Total: 5.61 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.52 Total: -20.48 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.08 Total: -37.59 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.01 Total: -11.23 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.18 -9.28 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339765885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.027 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds