Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48492 * 109.47525 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46842 * 300.00116 * 3 2 1 6 6 H 1.48502 * 109.46978 * 59.99615 * 3 2 1 7 7 C 1.37873 * 120.00678 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00661 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.52989 * 109.47336 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47441 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47354 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99684 * 173.31190 * 12 11 10 14 14 H 1.09001 * 109.47631 * 336.28690 * 13 12 11 15 15 C 1.52995 * 109.47519 * 96.29215 * 13 12 11 16 16 C 1.53006 * 117.49917 * 1.68016 * 15 13 12 17 17 C 1.52998 * 117.49899 * 293.02182 * 15 13 12 18 18 C 1.53005 * 109.46821 * 216.28792 * 13 12 11 19 19 C 1.52998 * 109.82622 * 180.56599 * 18 13 12 20 20 O 1.42894 * 109.47461 * 185.00422 * 19 18 13 21 21 C 1.54384 * 109.82732 * 59.58893 * 18 13 12 22 22 C 1.55305 * 102.25162 * 219.12902 * 21 18 13 23 23 C 1.54949 * 100.94344 * 34.13342 * 22 21 18 24 24 O 1.43233 * 109.83462 * 301.45695 * 18 13 12 25 25 H 0.96996 * 120.00570 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.46655 * 60.00287 * 9 7 2 27 27 H 1.08998 * 109.47239 * 300.00795 * 9 7 2 28 28 H 1.08998 * 109.47858 * 300.00724 * 10 9 7 29 29 H 1.09008 * 109.46961 * 60.00145 * 10 9 7 30 30 H 1.08997 * 109.47599 * 300.00786 * 11 10 9 31 31 H 1.09008 * 109.46914 * 60.00130 * 11 10 9 32 32 H 1.00900 * 110.99856 * 297.26464 * 12 11 10 33 33 H 1.09004 * 115.55609 * 147.34578 * 15 13 12 34 34 H 1.09004 * 117.49553 * 359.97438 * 16 15 13 35 35 H 1.08998 * 117.50148 * 145.01862 * 16 15 13 36 36 H 1.08998 * 117.50141 * 214.97875 * 17 15 13 37 37 H 1.09002 * 117.49903 * 359.97438 * 17 15 13 38 38 H 1.08997 * 109.47124 * 305.00367 * 19 18 13 39 39 H 1.09003 * 109.46994 * 65.00011 * 19 18 13 40 40 H 0.96700 * 114.00495 * 180.02562 * 20 19 18 41 41 H 1.08999 * 110.84919 * 337.31711 * 21 18 13 42 42 H 1.08998 * 110.84981 * 100.93972 * 21 18 13 43 43 H 1.09005 * 111.12531 * 276.21576 * 22 21 18 44 44 H 1.09001 * 111.16157 * 152.06833 * 22 21 18 45 45 H 1.08997 * 110.31038 * 204.63767 * 23 22 21 46 46 H 1.09003 * 110.39061 * 82.51339 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6619 0.0015 11 6 1.4805 -4.9870 0.0033 12 7 2.4352 -6.1035 0.0037 13 6 1.7421 -7.3886 0.1651 14 1 0.7822 -7.2248 0.6549 15 6 1.5122 -8.0204 -1.2092 16 6 2.0479 -7.2700 -2.4303 17 6 0.5422 -7.3137 -2.1582 18 6 2.5977 -8.3255 1.0203 19 6 1.8895 -9.6721 1.1820 20 8 2.6374 -10.4993 2.0755 21 6 2.8436 -7.6912 2.4062 22 6 4.3217 -8.0761 2.6872 23 6 4.9160 -8.0251 1.2571 24 8 3.8743 -8.5193 0.4004 25 1 -0.4851 0.8400 -0.0004 26 1 0.6242 -2.5575 -0.8881 27 1 0.6248 -2.5563 0.8919 28 1 2.8715 -3.6046 -0.8889 29 1 2.8727 -3.6038 0.8910 30 1 0.8548 -5.0442 0.8939 31 1 0.8529 -5.0454 -0.8861 32 1 2.9976 -6.0987 -0.8341 33 1 1.5390 -9.1097 -1.2364 34 1 2.5638 -6.3260 -2.2544 35 1 2.4268 -7.8656 -3.2608 36 1 -0.0690 -7.9381 -2.8099 37 1 0.0675 -6.3990 -1.8032 38 1 0.8904 -9.5108 1.5866 39 1 1.8137 -10.1616 0.2111 40 1 2.2463 -11.3710 2.2249 41 1 2.7261 -6.6084 2.3635 42 1 2.1807 -8.1253 3.1546 43 1 4.3934 -9.0796 3.1068 44 1 4.8016 -7.3454 3.3383 45 1 5.7962 -8.6644 1.1902 46 1 5.1723 -7.0002 0.9887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339765886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = -72.547421 kcal Electronic energy + Delta-G solvation = -23654.977110 eV Core-core repulsion = 20352.278441 eV Total energy + Delta-G solvation = -3302.698669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34237 -38.07129 -36.42315 -34.95239 -33.20751 -32.05748 -31.59271 -30.22584 -26.70092 -25.61243 -24.70248 -22.94426 -22.08084 -21.73226 -20.66810 -20.19374 -19.07067 -17.68783 -16.72204 -16.46515 -16.16944 -15.83278 -14.98368 -14.85520 -14.52646 -14.16330 -13.92730 -13.80014 -13.30241 -12.97013 -12.71481 -12.34785 -12.20044 -12.01391 -11.66341 -11.55594 -11.48137 -11.32890 -11.05061 -11.00223 -10.85575 -10.57026 -10.53173 -10.43602 -10.20356 -10.04385 -10.03552 -9.67859 -9.44001 -9.23134 -8.99545 -8.33096 -8.03679 -5.98137 -3.99933 3.32354 3.39792 3.44451 3.68619 3.80897 4.02088 4.46479 4.51738 4.69685 4.77177 4.88364 4.92762 5.01779 5.06722 5.16360 5.20010 5.31638 5.37877 5.38216 5.44941 5.60013 5.61315 5.76503 5.86353 5.87793 5.94929 5.96767 6.00342 6.04772 6.11732 6.14134 6.14412 6.38315 6.45636 6.73788 6.80227 7.16319 7.22068 7.38255 7.46697 7.69087 7.71177 7.85864 8.02535 8.46197 9.07576 9.64161 11.13337 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.021705 B = 0.003719 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.738833 B = 7527.243872 C = 8167.455244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.055 3.945 12 N -0.681 5.681 13 C 0.115 3.885 14 H 0.085 0.915 15 C -0.172 4.172 16 C -0.177 4.177 17 C -0.186 4.186 18 C 0.129 3.871 19 C 0.073 3.927 20 O -0.562 6.562 21 C -0.131 4.131 22 C -0.146 4.146 23 C 0.061 3.939 24 O -0.361 6.361 25 H 0.259 0.741 26 H 0.013 0.987 27 H 0.015 0.985 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.347 0.653 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.373 0.627 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 -21.862 1.575 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.073 4.073 12 N -0.315 5.315 13 C 0.004 3.996 14 H 0.103 0.897 15 C -0.191 4.191 16 C -0.215 4.215 17 C -0.223 4.223 18 C 0.089 3.911 19 C -0.006 4.006 20 O -0.367 6.367 21 C -0.169 4.169 22 C -0.184 4.184 23 C -0.016 4.016 24 O -0.280 6.280 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.171 0.829 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.219 0.781 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.959 -21.220 2.043 21.682 hybrid contribution -0.486 0.433 -0.799 1.031 sum 3.473 -20.786 1.243 21.111 Atomic orbital electron populations 1.69970 1.06053 1.26411 1.51206 1.25022 0.94831 0.99240 0.95415 0.86557 0.80178 0.83868 0.77535 1.19721 1.21065 1.21039 1.21296 0.93086 0.91054 1.50096 0.92648 1.19065 0.94018 0.91442 0.97019 1.21587 0.99105 0.92874 1.00667 1.22296 0.94119 0.91007 0.99899 1.60557 1.24269 1.00816 1.45884 1.21279 0.95950 0.89723 0.92623 0.89702 1.23075 1.04799 0.99142 0.92095 1.23021 0.96547 1.02621 0.99276 1.23149 0.92815 1.03076 1.03253 1.21976 0.85294 0.91227 0.92649 1.22546 0.93627 0.91655 0.92753 1.86520 1.53146 1.29670 1.67345 1.22951 0.96611 1.02507 0.94811 1.23130 0.95694 1.02101 0.97448 1.23225 0.90565 0.98888 0.88885 1.88358 1.13802 1.82488 1.43327 0.93127 0.96870 0.96675 0.93759 0.92666 0.91672 0.95399 0.82922 0.87756 0.88156 0.88873 0.89094 0.88261 0.92980 0.93063 0.78068 0.88866 0.91191 0.90414 0.90878 0.91060 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.10 -2.15 5.46 -26.74 -0.15 -2.30 16 11 C 0.06 0.92 5.37 -3.82 -0.02 0.90 16 12 N -0.68 -9.76 4.96 -106.72 -0.53 -10.29 16 13 C 0.12 1.44 1.79 -67.71 -0.12 1.31 16 14 H 0.09 1.06 7.54 -51.93 -0.39 0.67 16 15 C -0.17 -1.98 5.21 -90.62 -0.47 -2.45 16 16 C -0.18 -2.11 9.58 -26.69 -0.26 -2.37 16 17 C -0.19 -2.16 9.91 -26.69 -0.26 -2.43 16 18 C 0.13 1.56 0.54 -89.89 -0.05 1.51 16 19 C 0.07 0.73 5.73 37.16 0.21 0.94 16 20 O -0.56 -5.50 11.98 -40.14 -0.48 -5.98 16 21 C -0.13 -1.61 5.65 -24.78 -0.14 -1.75 16 22 C -0.15 -1.69 6.79 -24.48 -0.17 -1.85 16 23 C 0.06 0.75 7.78 38.19 0.30 1.05 16 24 O -0.36 -4.91 10.17 -40.14 -0.41 -5.32 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.01 0.36 8.14 -51.92 -0.42 -0.07 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 30 H 0.06 1.11 7.89 -51.93 -0.41 0.70 16 31 H 0.03 0.47 5.83 -51.92 -0.30 0.17 16 32 H 0.35 5.05 5.47 -39.29 -0.21 4.83 16 33 H 0.10 1.13 6.14 -51.93 -0.32 0.81 16 34 H 0.10 1.31 5.67 -51.93 -0.29 1.02 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 1.29 6.09 -51.93 -0.32 0.97 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.49 6.35 -51.93 -0.33 0.16 16 40 H 0.37 1.94 9.12 45.56 0.42 2.35 16 41 H 0.09 1.29 7.16 -51.93 -0.37 0.92 16 42 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 43 H 0.08 0.90 7.35 -51.93 -0.38 0.52 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -31.33 354.46 -9.12 -40.45 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.09 Total: 5.95 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -1.67 Total: -20.59 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.21 Total: -36.70 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.89 Total: -11.30 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.33 -9.12 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339765886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.096 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds