Wall clock time and date at job start Tue Mar 31 2020 05:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99838 * 2 1 4 4 H 1.48502 * 109.46723 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47222 * 299.99544 * 3 2 1 6 6 H 1.48503 * 109.47550 * 59.99958 * 3 2 1 7 7 C 1.37874 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99662 * 179.72816 * 7 2 1 9 9 C 1.50697 * 120.00353 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47353 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47301 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00130 * 174.23161 * 12 11 10 14 14 H 1.09005 * 109.47028 * 30.70855 * 13 12 11 15 15 C 1.52998 * 109.47085 * 270.71108 * 13 12 11 16 16 C 1.52993 * 117.50146 * 16.86691 * 15 13 12 17 17 C 1.53000 * 117.49972 * 308.24163 * 15 13 12 18 18 C 1.53003 * 109.47171 * 150.70677 * 13 12 11 19 19 C 1.52999 * 109.87234 * 314.45721 * 18 13 12 20 20 O 1.42897 * 109.47200 * 184.99867 * 19 18 13 21 21 C 1.54097 * 109.87828 * 193.44613 * 18 13 12 22 22 C 1.54817 * 104.18918 * 242.60701 * 21 18 13 23 23 C 1.54999 * 102.08814 * 20.88104 * 22 21 18 24 24 O 1.43751 * 109.87569 * 75.46263 * 18 13 12 25 25 H 0.97000 * 120.00311 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47520 * 299.99826 * 9 7 2 27 27 H 1.09001 * 109.46988 * 60.00066 * 9 7 2 28 28 H 1.09003 * 109.47314 * 300.00285 * 10 9 7 29 29 H 1.08994 * 109.47578 * 59.99937 * 10 9 7 30 30 H 1.08999 * 109.47410 * 299.99968 * 11 10 9 31 31 H 1.09006 * 109.47384 * 59.99911 * 11 10 9 32 32 H 1.00905 * 111.00600 * 298.18752 * 12 11 10 33 33 H 1.09008 * 115.54639 * 162.57710 * 15 13 12 34 34 H 1.08998 * 117.49559 * 359.97438 * 16 15 13 35 35 H 1.08998 * 117.50450 * 145.02425 * 16 15 13 36 36 H 1.08994 * 117.49871 * 214.98236 * 17 15 13 37 37 H 1.09003 * 117.49703 * 0.02562 * 17 15 13 38 38 H 1.09000 * 109.46683 * 304.99875 * 19 18 13 39 39 H 1.08993 * 109.47385 * 64.99686 * 19 18 13 40 40 H 0.96700 * 114.00039 * 179.97438 * 20 19 18 41 41 H 1.09001 * 110.49093 * 1.28395 * 21 18 13 42 42 H 1.09000 * 110.48790 * 123.80185 * 21 18 13 43 43 H 1.08999 * 110.90943 * 139.07572 * 22 21 18 44 44 H 1.08997 * 110.91061 * 262.65434 * 22 21 18 45 45 H 1.09002 * 110.62034 * 81.47707 * 23 22 21 46 46 H 1.09001 * 110.61871 * 204.31687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 -0.0039 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4348 -6.1036 -0.0007 13 6 1.7398 -7.3906 0.1365 14 1 0.7522 -7.3206 -0.3197 15 6 1.5930 -7.7353 1.6199 16 6 1.7870 -6.6034 2.6308 17 6 2.8548 -7.6893 2.4840 18 6 2.5487 -8.4843 -0.5638 19 6 3.0082 -7.9923 -1.9377 20 8 3.6616 -9.0573 -2.6310 21 6 1.6878 -9.7525 -0.7223 22 6 2.4331 -10.8236 0.1107 23 6 3.2913 -9.9539 1.0645 24 8 3.6900 -8.8361 0.2363 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5568 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 2.8719 -3.6043 -0.8894 29 1 2.8719 -3.6044 0.8904 30 1 0.8533 -5.0451 0.8896 31 1 0.8538 -5.0446 -0.8903 32 1 3.0080 -6.0890 -0.8310 33 1 0.8502 -8.4979 1.8540 34 1 2.0196 -5.6132 2.2390 35 1 1.1717 -6.6210 3.5303 36 1 2.9418 -8.4213 3.2869 37 1 3.7894 -7.4130 1.9958 38 1 2.1436 -7.6608 -2.5127 39 1 3.7017 -7.1608 -1.8126 40 1 3.9797 -8.8165 -3.5119 41 1 0.6872 -9.5868 -0.3230 42 1 1.6353 -10.0495 -1.7698 43 1 1.7298 -11.4386 0.6722 44 1 3.0649 -11.4421 -0.5267 45 1 2.6966 -9.6116 1.9114 46 1 4.1639 -10.5089 1.4091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339765887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:16 Heat of formation + Delta-G solvation = -62.479113 kcal Electronic energy + Delta-G solvation = -23775.960968 eV Core-core repulsion = 20473.698893 eV Total energy + Delta-G solvation = -3302.262075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75725 -37.30856 -36.65406 -35.10457 -33.48882 -32.23398 -31.70306 -29.81501 -26.84158 -25.96899 -24.86842 -22.62915 -22.46620 -21.25169 -20.78937 -20.12806 -19.24573 -17.85022 -16.47680 -16.27932 -16.16977 -15.75503 -14.98268 -14.90272 -14.57233 -14.30969 -14.12218 -13.87799 -13.45998 -13.20855 -12.72544 -12.33225 -12.26454 -11.90893 -11.74808 -11.51312 -11.38904 -11.22293 -11.04102 -11.00493 -10.81531 -10.67710 -10.52489 -10.42544 -10.17391 -10.10561 -9.83520 -9.66968 -9.35317 -9.12552 -8.97205 -8.33040 -8.13402 -5.98066 -3.99862 3.32406 3.39853 3.44584 3.68422 3.82735 4.15982 4.34322 4.49828 4.56924 4.63728 4.71980 4.91056 5.03656 5.09285 5.17666 5.21289 5.33407 5.36358 5.37920 5.47515 5.61452 5.63871 5.70092 5.74653 5.78636 5.84670 5.91058 5.91245 5.98688 6.04515 6.17122 6.34653 6.53194 6.66787 6.73638 6.81228 6.95347 7.16231 7.37503 7.42307 7.63727 7.71015 7.85633 8.02697 8.46210 9.07689 9.64183 11.13399 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.003511 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.892502 B = 7973.264044 C = 8453.292666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.054 3.946 12 N -0.682 5.682 13 C 0.108 3.892 14 H 0.054 0.946 15 C -0.155 4.155 16 C -0.172 4.172 17 C -0.154 4.154 18 C 0.112 3.888 19 C 0.076 3.924 20 O -0.562 6.562 21 C -0.137 4.137 22 C -0.149 4.149 23 C 0.032 3.968 24 O -0.342 6.342 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.338 0.662 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.378 0.622 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 -22.415 -0.898 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.074 4.074 12 N -0.316 5.316 13 C -0.003 4.003 14 H 0.072 0.928 15 C -0.174 4.174 16 C -0.209 4.209 17 C -0.191 4.191 18 C 0.071 3.929 19 C -0.002 4.002 20 O -0.366 6.366 21 C -0.176 4.176 22 C -0.187 4.187 23 C -0.045 4.045 24 O -0.260 6.260 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.159 0.841 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.224 0.776 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.655 -22.449 0.307 22.747 hybrid contribution -0.222 1.096 -1.419 1.807 sum 3.433 -21.353 -1.112 21.656 Atomic orbital electron populations 1.69978 1.06051 1.26407 1.51206 1.25029 0.94840 0.99255 0.95427 0.86551 0.80177 0.83844 0.77529 1.19714 1.21091 1.21024 1.21298 0.93091 0.91047 1.50086 0.92635 1.19068 0.94015 0.91426 0.97055 1.21599 0.99095 0.92866 1.00721 1.22299 0.94109 0.90896 1.00088 1.60520 1.24190 1.01142 1.45760 1.21405 0.95276 0.89134 0.94435 0.92795 1.22146 1.01192 1.02407 0.91650 1.23168 1.02268 0.96577 0.98915 1.22894 0.94784 1.00878 1.00549 1.22176 0.86953 0.94513 0.89246 1.22311 0.96457 0.89865 0.91579 1.86495 1.78543 1.38126 1.33485 1.22854 0.98788 0.94118 1.01797 1.23038 0.99192 0.98084 0.98373 1.24028 0.99049 0.86720 0.94656 1.89008 1.32767 1.49981 1.54261 0.93131 0.96579 0.96924 0.93816 0.92528 0.90832 0.95992 0.84069 0.88780 0.86579 0.90221 0.90354 0.87144 0.92667 0.92054 0.77569 0.90949 0.90083 0.90907 0.90822 0.90003 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.16 5.46 -26.73 -0.15 -2.31 16 11 C 0.05 0.92 4.52 -3.83 -0.02 0.90 16 12 N -0.68 -9.85 5.17 -106.72 -0.55 -10.40 16 13 C 0.11 1.36 1.86 -67.71 -0.13 1.23 16 14 H 0.05 0.69 7.64 -51.93 -0.40 0.29 16 15 C -0.16 -1.89 4.01 -90.62 -0.36 -2.25 16 16 C -0.17 -2.35 9.13 -26.73 -0.24 -2.59 16 17 C -0.15 -1.90 6.61 -26.73 -0.18 -2.08 16 18 C 0.11 1.29 0.76 -90.05 -0.07 1.22 16 19 C 0.08 0.83 5.40 37.16 0.20 1.03 16 20 O -0.56 -5.84 12.69 -39.88 -0.51 -6.35 16 21 C -0.14 -1.38 5.75 -25.20 -0.14 -1.52 16 22 C -0.15 -1.37 7.16 -24.72 -0.18 -1.55 16 23 C 0.03 0.33 6.38 38.21 0.24 0.57 16 24 O -0.34 -4.43 8.93 -39.88 -0.36 -4.79 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.29 6.40 -51.93 -0.33 0.96 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.34 4.69 5.55 -39.29 -0.22 4.48 16 33 H 0.09 1.03 8.06 -51.92 -0.42 0.61 16 34 H 0.12 1.87 5.44 -51.93 -0.28 1.59 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.83 7.51 -51.93 -0.39 0.44 16 37 H 0.11 1.58 7.09 -51.93 -0.37 1.22 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.70 6.24 -51.93 -0.32 0.37 16 40 H 0.38 2.28 9.12 45.56 0.42 2.69 16 41 H 0.07 0.67 7.56 -51.93 -0.39 0.28 16 42 H 0.08 0.82 7.18 -51.93 -0.37 0.45 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.80 3.94 -51.93 -0.20 0.60 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -31.72 346.71 -9.10 -40.82 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.05 Total: 5.58 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -1.57 Total: -20.52 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.18 Total: -36.82 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.86 Total: -11.14 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.72 -9.10 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339765887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.662 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds