Wall clock time and date at job start Tue Mar 31 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99798 * 2 1 4 4 O 1.20824 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99900 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47152 * 60.00249 * 5 3 2 7 7 C 1.53002 * 109.46966 * 300.00390 * 5 3 2 8 8 C 1.53006 * 109.46711 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47445 * 59.99695 * 8 7 5 10 10 C 1.53002 * 109.47092 * 300.00075 * 9 8 7 11 11 C 1.53000 * 109.46912 * 180.02562 * 5 3 2 12 12 C 1.53002 * 109.47233 * 299.99748 * 11 5 3 13 13 N 1.46896 * 109.47261 * 60.00053 * 11 5 3 14 14 C 1.46905 * 110.99692 * 179.97438 * 13 11 5 15 15 C 1.53002 * 109.46825 * 179.97438 * 14 13 11 16 16 C 1.53008 * 109.47050 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46675 * 180.02562 * 16 15 14 18 18 H 1.07988 * 120.00546 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99125 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00649 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99587 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47178 * 59.99815 * 21 19 17 23 23 H 1.48499 * 109.46995 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47266 * 299.99804 * 21 19 17 25 25 H 1.08993 * 109.47391 * 299.99599 * 1 2 3 26 26 H 1.09000 * 109.47246 * 59.99772 * 1 2 3 27 27 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47075 * 299.99352 * 7 5 3 29 29 H 1.08996 * 109.47407 * 60.00310 * 7 5 3 30 30 H 1.09001 * 109.46726 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.46589 * 299.99365 * 8 7 5 32 32 H 1.09002 * 109.47045 * 59.99942 * 9 8 7 33 33 H 1.09000 * 109.47140 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.46497 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47067 * 299.99853 * 10 9 8 36 36 H 1.09000 * 109.46986 * 60.00203 * 12 11 5 37 37 H 1.08993 * 109.47662 * 180.02562 * 12 11 5 38 38 H 1.09002 * 109.47075 * 300.00932 * 12 11 5 39 39 H 1.00897 * 111.00157 * 56.04759 * 13 11 5 40 40 H 1.09001 * 109.47214 * 299.99867 * 14 13 11 41 41 H 1.08996 * 109.46923 * 60.00613 * 14 13 11 42 42 H 1.09001 * 109.47200 * 299.99978 * 15 14 13 43 43 H 1.09000 * 109.47297 * 60.00090 * 15 14 13 44 44 H 1.09001 * 109.46883 * 299.99905 * 16 15 14 45 45 H 1.09000 * 109.46768 * 60.00066 * 16 15 14 46 46 H 0.97003 * 120.00358 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.1129 0.5815 1.2502 8 6 5.6408 0.6622 1.2510 9 6 6.0741 2.1295 1.2512 10 6 5.5275 2.8229 0.0016 11 6 4.0001 2.7421 0.0011 12 6 3.4535 3.4360 -1.2482 13 7 3.4744 3.4077 1.2005 14 6 3.8724 4.8214 1.2351 15 6 3.3071 5.4796 2.4953 16 6 3.7211 6.9522 2.5311 17 6 3.1648 7.6002 3.7727 18 1 2.5747 7.0202 4.4666 19 6 3.4085 8.9342 4.0222 20 7 4.1267 9.6408 3.1770 21 14 2.7183 9.7378 5.5608 22 1 3.2499 9.0452 6.7620 23 1 3.1202 11.1670 5.5956 24 1 1.2366 9.6400 5.5483 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.7228 1.0758 2.1399 29 1 3.8039 -0.4638 1.2502 30 1 6.0301 0.1686 2.1415 31 1 6.0311 0.1681 0.3613 32 1 5.6837 2.6235 2.1410 33 1 7.1626 2.1869 1.2523 34 1 5.8366 3.8681 0.0016 35 1 5.9179 2.3289 -0.8881 36 1 2.3650 3.3789 -1.2486 37 1 3.7628 4.4811 -1.2481 38 1 3.8435 2.9420 -2.1382 39 1 3.7690 2.9288 2.0383 40 1 4.9601 4.8925 1.2443 41 1 3.4824 5.3303 0.3537 42 1 2.2195 5.4085 2.4857 43 1 3.6967 4.9707 3.3770 44 1 4.8088 7.0236 2.5406 45 1 3.3312 7.4607 1.6494 46 1 4.2984 10.5792 3.3527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340369014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:54 Heat of formation + Delta-G solvation = -106.500338 kcal Electronic energy + Delta-G solvation = -23736.664459 eV Core-core repulsion = 20432.493480 eV Total energy + Delta-G solvation = -3304.170978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04844 -39.17823 -36.28447 -35.21056 -33.37497 -31.96039 -31.43304 -29.57642 -27.92581 -26.69747 -25.78155 -23.68364 -22.77166 -21.27076 -20.90222 -19.97081 -18.62419 -17.47874 -16.75485 -16.29440 -16.21605 -15.68111 -14.96344 -14.72493 -14.41518 -14.27661 -13.95545 -13.78432 -13.42126 -12.90333 -12.77060 -12.38063 -12.16532 -12.10020 -11.99926 -11.88437 -11.62615 -11.51728 -11.35431 -11.15533 -10.88972 -10.72580 -10.67893 -10.62644 -10.51320 -10.37698 -10.08131 -9.83056 -9.56034 -9.24519 -8.99068 -8.27978 -7.90683 -5.93523 -3.95157 2.37509 2.72525 3.37709 3.41408 3.44595 4.29048 4.46596 4.52666 4.53771 4.66556 4.93744 4.99360 5.03390 5.05337 5.12620 5.17924 5.23343 5.36271 5.42109 5.45070 5.47643 5.64215 5.74591 5.82476 5.85369 5.90073 5.93480 6.00307 6.04211 6.09460 6.21578 6.25833 6.34731 6.50331 6.68211 6.84591 6.92597 7.24382 7.50420 7.75466 7.78393 7.93000 7.95153 8.07722 8.51631 9.11924 9.68331 11.17929 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.003827 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.071598 B = 7314.695718 C = 7946.481051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.457 3.543 4 O -0.462 6.462 5 C -0.063 4.063 6 H 0.104 0.896 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.126 4.126 10 C -0.149 4.149 11 C 0.131 3.869 12 C -0.155 4.155 13 N -0.666 5.666 14 C 0.058 3.942 15 C -0.106 4.106 16 C 0.024 3.976 17 C -0.517 4.517 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.332 0.668 40 H 0.026 0.974 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.012 0.988 45 H 0.015 0.985 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 -22.632 -8.780 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.298 3.702 4 O -0.346 6.346 5 C -0.083 4.083 6 H 0.122 0.878 7 C -0.153 4.153 8 C -0.154 4.154 9 C -0.164 4.164 10 C -0.189 4.189 11 C 0.039 3.961 12 C -0.212 4.212 13 N -0.298 5.298 14 C -0.070 4.070 15 C -0.144 4.144 16 C -0.014 4.014 17 C -0.556 4.556 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.152 0.848 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.035 -21.997 -9.085 23.799 hybrid contribution 0.433 0.547 1.054 1.264 sum 0.398 -21.449 -8.031 22.907 Atomic orbital electron populations 1.23175 0.76894 1.03097 1.02549 1.86485 1.22987 1.34342 1.84916 1.23559 0.91761 0.81272 0.73601 1.90692 1.66379 1.35472 1.42025 1.21127 0.87598 0.98107 1.01419 0.87779 1.21570 0.96114 1.00872 0.96726 1.21538 0.94704 0.96887 1.02227 1.21592 1.00765 0.95390 0.98634 1.22274 0.96353 1.01900 0.98341 1.20646 0.91485 0.90567 0.93364 1.22155 1.03983 1.00605 0.94481 1.60765 1.62817 1.03295 1.02958 1.22169 0.97108 0.87041 1.00656 1.21602 1.00321 0.98357 0.94085 1.19046 0.96359 0.89043 0.96942 1.21235 1.32452 0.94898 1.06997 0.92804 1.25018 0.95349 0.97455 0.96653 1.69956 1.39348 1.08139 1.36248 0.86672 0.79514 0.78235 0.83659 1.20315 1.21335 1.20248 0.91894 0.92196 0.88635 0.90801 0.90571 0.91413 0.91720 0.91600 0.91614 0.90566 0.91655 0.89548 0.91941 0.93399 0.84825 0.95623 0.91194 0.92643 0.94029 0.96925 0.96650 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.37 -4.17 10.47 -39.25 -0.41 -4.58 16 3 C 0.46 5.89 6.80 36.01 0.24 6.14 16 4 O -0.46 -7.47 12.63 -18.75 -0.24 -7.70 16 5 C -0.06 -0.68 1.99 -91.77 -0.18 -0.86 16 6 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 7 C -0.12 -1.07 4.88 -26.73 -0.13 -1.20 16 8 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 9 C -0.13 -1.27 5.66 -26.73 -0.15 -1.42 16 10 C -0.15 -1.66 4.35 -26.75 -0.12 -1.77 16 11 C 0.13 1.64 0.28 -131.63 -0.04 1.60 16 12 C -0.16 -2.06 7.92 37.16 0.29 -1.77 16 13 N -0.67 -10.22 4.75 -99.99 -0.47 -10.69 16 14 C 0.06 1.05 4.90 -3.82 -0.02 1.04 16 15 C -0.11 -2.31 5.41 -26.73 -0.14 -2.45 16 16 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 17 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.90 -27.64 13.29 55.43 0.74 -26.91 16 21 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 26 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.78 6.57 -51.93 -0.34 0.44 16 29 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.76 6.76 -51.93 -0.35 0.41 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.97 6.40 -51.93 -0.33 0.63 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.33 5.52 -51.93 -0.29 1.04 16 37 H 0.06 0.89 6.41 -51.93 -0.33 0.56 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.33 4.85 5.18 -39.29 -0.20 4.65 16 40 H 0.03 0.45 6.30 -51.93 -0.33 0.13 16 41 H 0.07 1.33 6.30 -51.93 -0.33 1.00 16 42 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -32.49 349.63 -7.98 -40.47 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.96 Total: 0.79 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 0.12 Total: -13.89 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.26 Total: -37.60 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.65 Total: -12.28 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.49 -7.98 -40.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340369014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.029 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds