Wall clock time and date at job start Tue Mar 31 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 117.00135 * 2 1 4 4 O 1.20824 * 119.99742 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00186 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46885 * 299.99588 * 5 3 2 7 7 C 1.53005 * 109.47505 * 59.99326 * 5 3 2 8 8 C 1.52995 * 109.47124 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47522 * 300.00373 * 8 7 5 10 10 C 1.52995 * 109.46860 * 60.00088 * 9 8 7 11 11 C 1.53000 * 109.47193 * 179.97438 * 5 3 2 12 12 C 1.52997 * 109.47173 * 299.99554 * 11 5 3 13 13 N 1.46895 * 109.47239 * 59.99741 * 11 5 3 14 14 C 1.46896 * 111.00303 * 179.97438 * 13 11 5 15 15 C 1.52996 * 109.47489 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47340 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46925 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00196 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99394 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99426 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47776 * 59.99746 * 21 19 17 23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47028 * 299.99350 * 21 19 17 25 25 H 1.08998 * 109.46648 * 299.99950 * 1 2 3 26 26 H 1.08999 * 109.47045 * 60.00211 * 1 2 3 27 27 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46873 * 300.00499 * 7 5 3 29 29 H 1.08999 * 109.46342 * 60.00226 * 7 5 3 30 30 H 1.09002 * 109.46936 * 60.00464 * 8 7 5 31 31 H 1.09001 * 109.47309 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46929 * 180.02562 * 9 8 7 33 33 H 1.08994 * 109.47243 * 299.99715 * 9 8 7 34 34 H 1.09002 * 109.47005 * 179.97438 * 10 9 8 35 35 H 1.09002 * 109.47344 * 60.00066 * 10 9 8 36 36 H 1.09002 * 109.47004 * 179.97438 * 12 11 5 37 37 H 1.09001 * 109.47309 * 300.00153 * 12 11 5 38 38 H 1.09001 * 109.47106 * 59.99920 * 12 11 5 39 39 H 1.00899 * 111.00319 * 303.95934 * 13 11 5 40 40 H 1.09004 * 109.46736 * 60.00072 * 14 13 11 41 41 H 1.09000 * 109.47357 * 300.00108 * 14 13 11 42 42 H 1.09004 * 109.46785 * 60.00454 * 15 14 13 43 43 H 1.09004 * 109.47694 * 300.00553 * 15 14 13 44 44 H 1.09000 * 109.46497 * 60.00561 * 16 15 14 45 45 H 1.09000 * 109.47312 * 300.00340 * 16 15 14 46 46 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1130 0.5814 -1.2501 8 6 5.6408 0.6621 -1.2509 9 6 6.0741 2.1294 -1.2512 10 6 5.5275 2.8227 -0.0017 11 6 4.0001 2.7420 -0.0011 12 6 3.4527 3.4353 -1.2503 13 7 3.4753 3.4083 1.1983 14 6 3.8734 4.8219 1.2321 15 6 3.3090 5.4807 2.4923 16 6 3.7231 6.9532 2.5271 17 6 3.1676 7.6020 3.7688 18 1 2.5786 7.0220 4.4638 19 6 3.4115 8.9360 4.0175 20 7 4.1292 9.6422 3.1715 21 14 2.7236 9.7400 5.5570 22 1 3.2571 9.0479 6.7576 23 1 3.1244 11.1695 5.5901 24 1 1.2419 9.6421 5.5466 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.8039 -0.4639 -1.2501 29 1 3.7229 1.0757 -2.1398 30 1 6.0312 0.1681 -0.3611 31 1 6.0303 0.1684 -2.1413 32 1 7.1626 2.1868 -1.2522 33 1 5.6838 2.6234 -2.1409 34 1 5.8366 3.8680 -0.0016 35 1 5.9179 2.3287 0.8881 36 1 3.7614 4.4807 -1.2504 37 1 3.8421 2.9409 -2.1403 38 1 2.3642 3.3782 -1.2500 39 1 2.4724 3.3132 1.2552 40 1 3.4828 5.3304 0.3506 41 1 4.9610 4.8930 1.2405 42 1 3.6993 4.9722 3.3740 43 1 2.2213 5.4096 2.4836 44 1 3.3324 7.4613 1.6455 45 1 4.8107 7.0247 2.5357 46 1 4.3011 10.5806 3.3467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340369015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:57 Heat of formation + Delta-G solvation = -109.240447 kcal Electronic energy + Delta-G solvation = -23562.172915 eV Core-core repulsion = 20257.883116 eV Total energy + Delta-G solvation = -3304.289798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29568 -39.15042 -36.59654 -35.58740 -33.41046 -31.78328 -31.41356 -29.07894 -28.11318 -27.00207 -25.79108 -23.85450 -22.89977 -21.21303 -21.11684 -19.88188 -18.60490 -17.68114 -16.75959 -16.52955 -16.21031 -15.66008 -15.05594 -14.67742 -14.47599 -14.39033 -14.08431 -13.74827 -13.36496 -13.23490 -12.82192 -12.61011 -12.39290 -12.25800 -12.10396 -11.72405 -11.54120 -11.36880 -11.24564 -11.19743 -11.02575 -10.85776 -10.79293 -10.60170 -10.45025 -10.40271 -10.25183 -9.83170 -9.56150 -9.23397 -8.98301 -8.27388 -7.97701 -5.92977 -3.94581 2.07289 2.55715 3.38268 3.41796 3.45056 4.22680 4.32012 4.52225 4.53063 4.84432 4.90479 4.91364 4.98630 5.01940 5.11800 5.15985 5.19441 5.26427 5.33781 5.42612 5.52491 5.64850 5.71342 5.79797 5.83192 5.86849 5.92966 6.04396 6.07029 6.08766 6.14158 6.26120 6.29807 6.50517 6.55853 6.85413 6.91960 7.24799 7.49271 7.60698 7.76454 7.88576 7.95083 8.08292 8.52224 9.12433 9.68821 11.18524 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.003647 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.669988 B = 7675.056346 C = 8665.349979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.067 4.067 6 H 0.115 0.885 7 C -0.111 4.111 8 C -0.116 4.116 9 C -0.124 4.124 10 C -0.107 4.107 11 C 0.132 3.868 12 C -0.199 4.199 13 N -0.687 5.687 14 C 0.058 3.942 15 C -0.107 4.107 16 C 0.023 3.977 17 C -0.518 4.518 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.349 0.651 40 H 0.028 0.972 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 -22.616 -11.680 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.385 6.385 5 C -0.086 4.086 6 H 0.133 0.867 7 C -0.149 4.149 8 C -0.154 4.154 9 C -0.162 4.162 10 C -0.145 4.145 11 C 0.040 3.960 12 C -0.257 4.257 13 N -0.322 5.322 14 C -0.070 4.070 15 C -0.145 4.145 16 C -0.014 4.014 17 C -0.556 4.556 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.172 0.828 40 H 0.046 0.954 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.041 -22.346 -11.294 25.038 hybrid contribution -1.249 1.038 0.190 1.635 sum -1.208 -21.308 -11.104 24.059 Atomic orbital electron populations 1.23262 0.76498 1.03517 1.02717 1.86504 1.23326 1.33705 1.84106 1.23941 0.92113 0.81192 0.71676 1.90571 1.67167 1.35908 1.44847 1.21220 0.86414 0.98920 1.02066 0.86680 1.21583 0.96618 1.00612 0.96126 1.21527 0.94375 0.97150 1.02300 1.21647 1.00571 0.95308 0.98691 1.21610 0.93015 1.01778 0.98106 1.20597 0.95045 0.90157 0.90204 1.22890 1.03196 1.01559 0.98050 1.60874 1.19069 1.15448 1.36840 1.22147 1.00309 0.86021 0.98563 1.21612 0.99125 0.98474 0.95265 1.19051 0.96612 0.88927 0.96832 1.21243 1.32529 0.94865 1.06965 0.92782 1.25023 0.95355 0.97461 0.96664 1.69960 1.39346 1.08148 1.36244 0.86665 0.79438 0.78228 0.83707 1.20242 1.21334 1.20307 0.91686 0.91981 0.88266 0.90597 0.91147 0.91434 0.91548 0.91603 0.91607 0.90766 0.90937 0.91821 0.92437 0.90590 0.82831 0.95405 0.91437 0.92778 0.93841 0.96864 0.96634 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.85 10.47 -39.24 -0.41 -4.26 16 3 C 0.47 5.77 6.71 36.00 0.24 6.01 16 4 O -0.50 -7.45 11.32 -18.75 -0.21 -7.67 16 5 C -0.07 -0.73 2.13 -91.77 -0.20 -0.92 16 6 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 7 C -0.11 -0.94 4.86 -26.73 -0.13 -1.07 16 8 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 9 C -0.12 -1.12 5.65 -26.73 -0.15 -1.27 16 10 C -0.11 -1.26 4.49 -26.76 -0.12 -1.38 16 11 C 0.13 1.70 0.43 -131.63 -0.06 1.64 16 12 C -0.20 -2.63 7.22 37.16 0.27 -2.36 16 13 N -0.69 -11.12 6.07 -100.00 -0.61 -11.73 16 14 C 0.06 1.08 4.90 -3.83 -0.02 1.06 16 15 C -0.11 -2.38 5.41 -26.73 -0.14 -2.53 16 16 C 0.02 0.63 4.97 -27.88 -0.14 0.50 16 17 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 18 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 21 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 26 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 29 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 34 H 0.07 0.97 6.40 -51.93 -0.33 0.64 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16 37 H 0.06 0.64 4.80 -51.93 -0.25 0.39 16 38 H 0.08 1.13 5.52 -51.93 -0.29 0.84 16 39 H 0.35 6.03 6.00 -39.29 -0.24 5.80 16 40 H 0.03 0.53 6.30 -51.93 -0.33 0.21 16 41 H 0.07 1.24 6.30 -51.93 -0.33 0.91 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -32.18 346.25 -8.04 -40.22 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.79 Total: 1.99 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 0.05 Total: -14.08 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.13 Total: -38.74 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.62 Total: -11.92 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.18 -8.04 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340369015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.018 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds