Wall clock time and date at job start Tue Mar 31 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 116.99867 * 2 1 4 4 O 1.20830 * 120.00323 * 359.72425 * 3 2 1 5 5 C 1.50706 * 120.00024 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46564 * 299.72723 * 5 3 2 7 7 C 1.52997 * 109.46859 * 59.72071 * 5 3 2 8 8 C 1.53006 * 109.46797 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47298 * 300.00115 * 8 7 5 10 10 C 1.52996 * 109.46805 * 59.99968 * 9 8 7 11 11 C 1.52996 * 109.47408 * 299.99744 * 10 9 8 12 12 C 1.53008 * 109.47234 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47359 * 300.00203 * 11 10 9 14 14 C 1.46899 * 111.00049 * 299.99730 * 13 11 10 15 15 C 1.53000 * 109.47326 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47369 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47172 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00078 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99913 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00093 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46978 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46779 * 120.00266 * 21 19 17 24 24 H 1.48496 * 109.47163 * 240.00338 * 21 19 17 25 25 H 1.09009 * 109.46864 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47271 * 60.00074 * 1 2 3 27 27 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47505 * 300.00432 * 7 5 3 29 29 H 1.09001 * 109.47000 * 60.00919 * 7 5 3 30 30 H 1.09006 * 109.46802 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46675 * 60.00622 * 8 7 5 32 32 H 1.09000 * 109.46986 * 300.00195 * 9 8 7 33 33 H 1.09002 * 109.47205 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.47109 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.47163 * 60.00335 * 10 9 8 36 36 H 1.09004 * 109.46786 * 300.00139 * 12 11 10 37 37 H 1.08995 * 109.46766 * 60.00302 * 12 11 10 38 38 H 1.09002 * 109.47164 * 180.02562 * 12 11 10 39 39 H 1.00896 * 111.00125 * 176.04438 * 13 11 10 40 40 H 1.09000 * 109.47405 * 300.00457 * 14 13 11 41 41 H 1.09009 * 109.46692 * 60.00056 * 14 13 11 42 42 H 1.09003 * 109.47119 * 300.00183 * 15 14 13 43 43 H 1.08999 * 109.46800 * 59.99938 * 15 14 13 44 44 H 1.09003 * 109.46982 * 300.00061 * 16 15 14 45 45 H 1.08999 * 109.46837 * 59.99547 * 16 15 14 46 46 H 0.97000 * 120.00080 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 1 3.9561 0.7848 0.8916 7 6 4.1131 0.5755 -1.2466 8 6 5.6411 0.6550 -1.2469 9 6 6.0755 2.1221 -1.2535 10 6 5.5286 2.8213 -0.0074 11 6 4.0007 2.7419 -0.0071 12 6 3.4537 3.4418 1.2387 13 7 3.4757 3.4026 -1.2095 14 6 3.8738 4.8161 -1.2497 15 6 3.3103 5.4689 -2.5136 16 6 3.7254 6.9409 -2.5558 17 6 3.1709 7.5837 -3.8009 18 1 2.5811 7.0007 -4.4928 19 6 3.4158 8.9162 -4.0564 20 7 4.1337 9.6263 -3.2137 21 14 2.7291 9.7128 -5.6002 22 1 1.9624 8.7063 -6.3775 23 1 1.8316 10.8337 -5.2215 24 1 3.8470 10.2319 -6.4285 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.8041 -0.4697 -1.2418 29 1 3.7234 1.0655 -2.1388 30 1 6.0308 0.1564 -2.1345 31 1 6.0306 0.1647 -0.3547 32 1 5.6859 2.6123 -2.1457 33 1 7.1640 2.1787 -1.2541 34 1 5.8384 3.8664 -0.0118 35 1 5.9181 2.3311 0.8848 36 1 3.8432 2.9518 2.1311 37 1 3.7632 4.4869 1.2336 38 1 2.3652 3.3848 1.2391 39 1 2.4728 3.3077 -1.2656 40 1 3.4834 5.3287 -0.3706 41 1 4.9615 4.8871 -1.2586 42 1 3.7012 4.9562 -3.3925 43 1 2.2227 5.3978 -2.5052 44 1 3.3349 7.4539 -1.6769 45 1 4.8131 7.0115 -2.5643 46 1 4.3062 10.5637 -3.3936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340369016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:00 Heat of formation + Delta-G solvation = -110.771440 kcal Electronic energy + Delta-G solvation = -23739.813310 eV Core-core repulsion = 20435.457123 eV Total energy + Delta-G solvation = -3304.356187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22043 -39.05640 -36.56078 -35.29370 -33.41148 -31.90301 -31.38163 -29.43663 -28.01068 -26.61203 -25.80383 -23.69400 -22.78288 -21.18855 -20.87505 -19.93349 -18.89061 -17.67872 -16.75300 -16.55344 -16.20662 -15.23103 -14.89798 -14.82866 -14.37355 -14.27691 -13.93953 -13.84447 -13.39013 -12.98651 -12.76142 -12.50412 -12.27537 -12.09579 -12.04586 -11.88920 -11.52397 -11.40320 -11.23307 -11.18354 -10.90448 -10.86964 -10.75124 -10.53155 -10.50999 -10.37201 -10.07971 -9.77374 -9.56706 -9.24451 -8.96455 -8.28387 -7.93207 -5.93663 -3.95098 2.07397 2.56763 3.35119 3.42215 3.47194 4.29986 4.43508 4.52692 4.62834 4.82498 4.90683 4.98669 5.02051 5.12477 5.16767 5.29304 5.32805 5.37027 5.41601 5.42201 5.62903 5.76734 5.77909 5.82092 5.90409 6.00707 6.06523 6.08470 6.17666 6.20819 6.25952 6.28525 6.47812 6.53397 6.58718 6.85557 6.93431 7.24839 7.50259 7.61303 7.76650 7.89317 7.95603 8.07874 8.51879 9.12470 9.68531 11.17867 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.003827 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.478451 B = 7314.060545 C = 7947.653960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.065 4.065 6 H 0.105 0.895 7 C -0.104 4.104 8 C -0.111 4.111 9 C -0.117 4.117 10 C -0.105 4.105 11 C 0.130 3.870 12 C -0.197 4.197 13 N -0.679 5.679 14 C 0.057 3.943 15 C -0.106 4.106 16 C 0.023 3.977 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.348 0.652 40 H 0.027 0.973 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 -22.449 9.322 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.385 6.385 5 C -0.085 4.085 6 H 0.123 0.877 7 C -0.141 4.141 8 C -0.148 4.148 9 C -0.154 4.154 10 C -0.143 4.143 11 C 0.038 3.962 12 C -0.256 4.256 13 N -0.314 5.314 14 C -0.071 4.071 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.171 0.829 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.109 -22.200 8.938 23.932 hybrid contribution -1.225 1.059 0.024 1.619 sum -1.334 -21.141 8.962 23.001 Atomic orbital electron populations 1.23261 0.76519 1.03504 1.02702 1.86507 1.23305 1.33718 1.84088 1.23975 0.92147 0.81180 0.71657 1.90572 1.67193 1.35895 1.44885 1.21230 0.86344 0.98763 1.02145 0.87666 1.21443 0.96404 0.99477 0.96802 1.21464 0.94576 0.97275 1.01534 1.21473 0.99354 0.95016 0.99567 1.21606 0.92850 1.01668 0.98162 1.20643 0.95137 0.90257 0.90185 1.22819 1.03381 1.01760 0.97647 1.60859 1.18851 1.15331 1.36390 1.22152 1.00338 0.86128 0.98483 1.21596 0.99092 0.98458 0.95213 1.19057 0.96601 0.89004 0.96818 1.21313 1.32309 0.94944 1.06833 0.92696 1.25026 0.95377 0.97471 0.96676 1.69983 1.39469 1.07987 1.36243 0.86558 0.78798 0.79339 0.83449 1.19757 1.21102 1.21044 0.92010 0.91676 0.88285 0.91529 0.89787 0.91708 0.92480 0.89904 0.92567 0.90897 0.92152 0.93163 0.91640 0.90421 0.82930 0.95506 0.91428 0.92809 0.93886 0.96899 0.96649 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.84 10.46 -39.24 -0.41 -4.25 16 3 C 0.47 5.70 6.71 36.01 0.24 5.94 16 4 O -0.50 -7.36 11.32 -18.75 -0.21 -7.57 16 5 C -0.07 -0.71 1.99 -91.77 -0.18 -0.89 16 6 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.10 -1.04 4.98 -26.73 -0.13 -1.17 16 8 C -0.11 -1.02 5.92 -26.73 -0.16 -1.18 16 9 C -0.12 -1.29 5.77 -26.73 -0.15 -1.45 16 10 C -0.11 -1.22 4.35 -26.74 -0.12 -1.34 16 11 C 0.13 1.64 0.28 -131.60 -0.04 1.60 16 12 C -0.20 -2.60 7.91 37.16 0.29 -2.31 16 13 N -0.68 -10.46 4.54 -99.96 -0.45 -10.91 16 14 C 0.06 1.04 4.90 -3.82 -0.02 1.02 16 15 C -0.11 -2.31 5.41 -26.73 -0.14 -2.45 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 18 H 0.05 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 21 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.08 1.00 7.60 -51.93 -0.39 0.61 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.11 7.60 -51.93 -0.39 0.72 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.95 6.41 -51.93 -0.33 0.61 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.94 6.40 -51.93 -0.33 0.60 16 38 H 0.08 1.14 5.52 -51.93 -0.29 0.86 16 39 H 0.35 5.82 6.00 -39.29 -0.24 5.59 16 40 H 0.03 0.51 6.30 -51.93 -0.33 0.18 16 41 H 0.07 1.21 6.30 -51.92 -0.33 0.89 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -31.66 350.92 -8.05 -39.71 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.09 Total: 1.74 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 0.11 Total: -14.33 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.28 Total: -37.81 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.62 Total: -11.82 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.66 -8.05 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340369016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.059 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds