Wall clock time and date at job start Tue Mar 31 2020 06:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47283 * 2 1 4 4 C 1.53001 * 109.47323 * 119.99758 * 2 1 3 5 5 C 1.52999 * 109.46870 * 65.00180 * 4 2 1 6 6 N 1.46496 * 109.47322 * 180.02562 * 5 4 2 7 7 C 1.46500 * 119.99774 * 269.99783 * 6 5 4 8 8 C 1.50696 * 109.47267 * 269.99640 * 7 6 5 9 9 H 1.08005 * 120.00020 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00120 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00090 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99757 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47211 * 90.00276 * 12 10 8 14 14 H 1.48505 * 109.46858 * 209.99750 * 12 10 8 15 15 H 1.48500 * 109.47431 * 329.99769 * 12 10 8 16 16 C 1.34782 * 120.00381 * 90.00089 * 6 5 4 17 17 O 1.21277 * 119.99411 * 359.97438 * 16 6 5 18 18 C 1.50696 * 120.00022 * 180.02562 * 16 6 5 19 19 H 1.09003 * 110.01370 * 301.38399 * 18 16 6 20 20 C 1.53872 * 110.07633 * 62.80663 * 18 16 6 21 21 C 1.54266 * 106.60044 * 119.30565 * 20 18 16 22 22 C 1.54893 * 104.19500 * 23.61099 * 21 20 18 23 23 H 1.09000 * 110.75571 * 80.37081 * 22 21 20 24 24 O 1.42896 * 110.75319 * 203.74223 * 22 21 20 25 25 C 1.54266 * 110.03113 * 179.97438 * 18 16 6 26 26 H 1.09002 * 109.47294 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47445 * 299.99966 * 1 2 3 28 28 H 1.09003 * 109.47458 * 59.99811 * 1 2 3 29 29 H 1.08999 * 109.47224 * 239.99852 * 2 1 3 30 30 H 1.08998 * 109.47576 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47352 * 300.00321 * 3 2 1 32 32 H 1.09003 * 109.47232 * 60.00290 * 3 2 1 33 33 H 1.08999 * 109.47609 * 305.00377 * 4 2 1 34 34 H 1.09004 * 109.47494 * 184.99551 * 4 2 1 35 35 H 1.09003 * 109.47304 * 59.99909 * 5 4 2 36 36 H 1.09004 * 109.47069 * 299.99879 * 5 4 2 37 37 H 1.08997 * 109.47619 * 30.00045 * 7 6 5 38 38 H 1.09008 * 109.47034 * 150.00208 * 7 6 5 39 39 H 0.97000 * 120.00411 * 179.97438 * 11 10 8 40 40 H 1.09002 * 110.03208 * 238.58792 * 20 18 16 41 41 H 1.09000 * 110.03462 * 359.97189 * 20 18 16 42 42 H 1.09002 * 110.48438 * 142.28717 * 21 20 18 43 43 H 1.08998 * 110.48431 * 264.79545 * 21 20 18 44 44 H 0.96693 * 114.00326 * 293.32507 * 24 22 21 45 45 H 1.09001 * 110.48620 * 335.73477 * 25 18 16 46 46 H 1.09004 * 110.48798 * 98.37311 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 7 2.1230 -2.8859 2.3844 7 6 3.4513 -3.5040 2.3830 8 6 3.3408 -4.9311 1.9120 9 1 2.3775 -5.3371 1.6404 10 6 4.4694 -5.7187 1.8278 11 7 4.3730 -6.9641 1.4162 12 14 6.1353 -5.0167 2.2982 13 1 6.3814 -5.2521 3.7436 14 1 7.1962 -5.6829 1.5007 15 1 6.1528 -3.5573 2.0243 16 6 1.3499 -2.9527 3.4864 17 8 0.2505 -2.4406 3.4876 18 6 1.8520 -3.6625 4.7172 19 1 2.0842 -4.7008 4.4804 20 6 3.1041 -2.9533 5.2621 21 6 2.7586 -2.4846 6.6907 22 6 1.6136 -3.4290 7.1338 23 1 2.0109 -4.3874 7.4681 24 8 0.8239 -2.8215 8.1580 25 6 0.7895 -3.5995 5.8339 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 2.0699 -2.6549 0.3002 36 1 0.5489 -2.2723 1.1421 37 1 4.1091 -2.9502 1.7132 38 1 3.8617 -3.4854 3.3927 39 1 5.1670 -7.5181 1.3566 40 1 3.9440 -3.6474 5.2899 41 1 3.3495 -2.0954 4.6361 42 1 3.6210 -2.5962 7.3478 43 1 2.4192 -1.4488 6.6807 44 1 1.2943 -2.6924 8.9929 45 1 0.1300 -2.7445 5.6852 46 1 0.2143 -4.5249 5.8658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346316043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:50 Heat of formation + Delta-G solvation = -113.964732 kcal Electronic energy + Delta-G solvation = -23842.542552 eV Core-core repulsion = 20538.047893 eV Total energy + Delta-G solvation = -3304.494659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88708 -37.86691 -36.53896 -34.99518 -34.64426 -32.52802 -29.82666 -28.63702 -27.74524 -27.18282 -27.00192 -23.27007 -22.74963 -20.74691 -20.40327 -19.79565 -18.33197 -17.25652 -17.03255 -16.12297 -15.72155 -15.47453 -14.97312 -14.49778 -14.29457 -13.87983 -13.61059 -13.50119 -13.25175 -12.99141 -12.66943 -12.41470 -12.29102 -12.11553 -11.80199 -11.73414 -11.52411 -11.25082 -11.06705 -11.03121 -10.83286 -10.80554 -10.65372 -10.48573 -10.42712 -10.29599 -10.24124 -10.15034 -9.79271 -9.59756 -8.99642 -8.73429 -7.72286 -6.23862 -4.24879 3.12835 3.21774 3.23057 3.35845 3.77743 4.23328 4.32108 4.76090 4.79346 5.01598 5.06377 5.08854 5.11135 5.16370 5.36944 5.46853 5.61303 5.69610 5.70587 5.77462 5.79539 5.85546 5.87848 5.92737 5.97399 5.98428 6.06331 6.11150 6.16881 6.25057 6.31054 6.35520 6.39661 6.46908 6.49958 6.58838 6.61913 6.67820 6.73132 7.37318 7.44179 7.71452 8.14007 8.41161 8.81315 8.95619 9.35724 10.88939 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.007831 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.484862 B = 3574.878168 C = 5801.188366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.128 4.128 5 C 0.118 3.882 6 N -0.589 5.589 7 C 0.198 3.802 8 C -0.539 4.539 9 H 0.077 0.923 10 C 0.076 3.924 11 N -0.891 5.891 12 Si 0.868 3.132 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.526 3.474 17 O -0.567 6.567 18 C -0.109 4.109 19 H 0.114 0.886 20 C -0.110 4.110 21 C -0.155 4.155 22 C 0.095 3.905 23 H 0.065 0.935 24 O -0.564 6.564 25 C -0.101 4.101 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.266 0.734 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.373 0.627 45 H 0.092 0.908 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 11.146 5.628 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.318 5.318 7 C 0.077 3.923 8 C -0.578 4.578 9 H 0.096 0.904 10 C -0.127 4.127 11 N -0.529 5.529 12 Si 0.694 3.306 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.188 1.188 16 C 0.314 3.686 17 O -0.448 6.448 18 C -0.130 4.130 19 H 0.132 0.868 20 C -0.148 4.148 21 C -0.193 4.193 22 C 0.037 3.963 23 H 0.083 0.917 24 O -0.368 6.368 25 C -0.139 4.139 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.219 0.781 45 H 0.110 0.890 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.943 11.215 5.078 12.464 hybrid contribution 1.668 0.013 0.453 1.728 sum -0.275 11.229 5.532 12.520 Atomic orbital electron populations 1.21872 0.95245 1.02160 1.01156 1.21050 0.95964 0.95856 0.98456 1.21820 1.00784 0.96242 1.01331 1.22003 1.00778 0.96087 0.97770 1.21387 1.00168 0.90804 0.88143 1.47858 1.18591 1.53409 1.11969 1.20042 0.79839 0.94228 0.98221 1.21401 0.96396 0.94347 1.45642 0.90444 1.24872 0.98734 0.94618 0.94496 1.69892 1.29808 1.06961 1.46207 0.86975 0.84437 0.79951 0.79201 1.19791 1.20875 1.18842 1.20292 0.84390 0.79266 0.84639 1.90581 1.21282 1.49077 1.83860 1.21798 0.95663 1.02380 0.93143 0.86757 1.22081 0.97161 1.00462 0.95087 1.23068 0.98563 1.00518 0.97139 1.22874 0.90840 0.94384 0.88227 0.91686 1.86526 1.42176 1.83798 1.24344 1.22200 0.97309 1.03886 0.90482 0.92187 0.92768 0.93261 0.91142 0.92879 0.93002 0.92918 0.91935 0.92109 0.90495 0.90575 0.95108 0.94078 0.92378 0.90393 0.91154 0.91582 0.90851 0.78097 0.88963 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.95 37.15 0.33 -1.52 16 2 C -0.09 -1.21 2.92 -90.62 -0.26 -1.48 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 4 C -0.13 -1.97 5.01 -26.73 -0.13 -2.10 16 5 C 0.12 2.15 5.16 -4.04 -0.02 2.13 16 6 N -0.59 -11.98 2.43 -175.06 -0.43 -12.40 16 7 C 0.20 4.28 3.75 -5.20 -0.02 4.26 16 8 C -0.54 -14.00 9.80 -34.44 -0.34 -14.34 16 9 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 10 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 12 Si 0.87 19.40 27.47 -169.99 -4.67 14.73 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 16 C 0.53 10.78 6.83 -10.99 -0.08 10.70 16 17 O -0.57 -12.69 14.98 5.56 0.08 -12.61 16 18 C -0.11 -1.95 2.53 -90.66 -0.23 -2.18 16 19 H 0.11 2.21 7.95 -51.93 -0.41 1.80 16 20 C -0.11 -1.71 4.51 -25.61 -0.12 -1.83 16 21 C -0.16 -2.02 6.55 -25.07 -0.16 -2.18 16 22 C 0.10 1.30 4.28 -24.75 -0.11 1.19 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 O -0.56 -7.36 13.45 -35.23 -0.47 -7.83 16 25 C -0.10 -1.67 5.87 -25.09 -0.15 -1.82 16 26 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 27 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 36 H 0.08 1.43 5.84 -51.93 -0.30 1.13 16 37 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 38 H 0.04 0.84 3.59 -51.92 -0.19 0.66 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.08 1.20 7.59 -51.93 -0.39 0.80 16 41 H 0.07 1.13 7.01 -51.93 -0.36 0.76 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.37 3.01 9.12 45.56 0.42 3.43 16 45 H 0.09 1.72 6.88 -51.93 -0.36 1.36 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -30.33 357.69 -7.75 -38.08 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.40 Total: 7.98 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.04 Total: -8.50 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.35 Total: -37.24 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.39 Total: -20.44 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.67 Total: 14.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.33 -7.75 -38.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346316043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.883 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds